TCONS_00002636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002636
Unique NameTCONS_00002636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002636 ID=TCONS_00002636|Name=TCONS_00002636|organism=Clytia hemisphaerica|type=transcript|length=794bp
ACCGCCCGTTATCAAGATTCCAAAACTCGTCCCAGTTTCCCTTTCATTCT
CTGGCTTGGCGCCAAACAAGATGGCGATGGTTGATGCATATCTCTTGAAA
TGAAGGGAAGAATCACACAGTTAAGTACAAGTTTTTTGTCTGTTTAGAGC
AATTCTCTTTGTCCATGTTCTGTTTAATCCTATTTCTTTGAAGTAATATT
TTAATACAGTAGAAACGTCTTGGTCTATATAGAAAATACTGGTGTCCTGT
CTCTAGTGATTTATTTTTCTGAAGTTTATTTTCTATACATTTGATTTTAA
CTCGCTTTCAACACACAGGGTACAAGTTGagctgaaaaaacaaaaatttc
tttcaacagGTTTCTTTAAACAATAAAGCTTGGGTTTCAAGTGAATAAAT
TTTTGAGTAAAAATGtaattttcattgtttataACTGTATAAGTCAGATG
ATGATGGCTAGTATATATTAGGGTTTACGACGaatgaatttgtggaataa
agaattgattttaaaccacttagtcagatacgtgtaagttttaatttttc
tctgggtctacacatttgttgtgtatgtggcatcttttgataaaacttgA
GACctgttttcataaaaaactttactaatggctagtttatgagtttacga
caaatgaatttgtggaataaagaattgattttaaaccgcttagtcagata
cgtgtaagttttaattgttctctgggtctacacatttgttgtgtatgtgg
catcttttgatgaaacttgagacctgctttcataaaaaacttta
Run BLAST on NCBI

transcript from alignment at sc0000021:603259..604052+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002636 ID=TCONS_00002636|Name=TCONS_00002636|organism=Clytia hemisphaerica|type=transcript|length=794bp|location=Sequence derived from alignment at sc0000021:603259..604052+ (Clytia hemisphaerica)
ACCGCCCGTTATCAAGATTCCAAAACTCGTCCCAGTTTCCCTTTCATTCT
CTGGCTTGGCGCCAAACAAGATGGCGATGGTTGATGCATATCTCTTGAAA
TGAAGGGAAGAATCACACAGTTAAGTACAAGTTTTTTGTCTGTTTAGAGC
AATTCTCTTTGTCCATGTTCTGTTTAATCCTATTTCTTTGAAGTAATATT
TTAATACAGTAGAAACGTCTTGGTCTATATAGAAAATACTGGTGTCCTGT
CTCTAGTGATTTATTTTTCTGAAGTTTATTTTCTATACATTTGATTTTAA
CTCGCTTTCAACACACAGGGTACAAGTTGagctgaaaaaacaaaaatttc
tttcaacagGTTTCTTTAAACAATAAAGCTTGGGTTTCAAGTGAATAAAT
TTTTGAGTAAAAATGtaattttcattgtttataACTGTATAAGTCAGATG
ATGATGGCTAGTATATATTAGGGTTTACGACGaatgaatttgtggaataa
agaattgattttaaaccacttagtcagatacgtgtaagttttaatttttc
tctgggtctacacatttgttgtgtatgtggcatcttttgataaaacttgA
GACctgttttcataaaaaactttactaatggctagtttatgagtttacga
caaatgaatttgtggaataaagaattgattttaaaccgcttagtcagata
cgtgtaagttttaattgttctctgggtctacacatttgttgtgtatgtgg
catcttttgatgaaacttgagacctgctttcataaaaaacttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001426XLOC_001426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002636-exon-sc0000021-1491911889:603259..604052TCONS_00002636-exon-sc0000021-1491911889:603259..604052Clytia hemisphaericaexon
TCONS_00002636-exon-sc0000021-1510915933:603259..604052TCONS_00002636-exon-sc0000021-1510915933:603259..604052Clytia hemisphaericaexon
TCONS_00002636-exon-sc0000021-1575043694:603259..604052TCONS_00002636-exon-sc0000021-1575043694:603259..604052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:603259..604052 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.83561	4.3541	1.40072	1.819	17.5376	10.6112	12.7743	10.3471	9.61324	6.5585	8.06412	10.5207	7.22297	7.6298	11.8015	9.23913	18.7029	16.1052	5.45378	6.13432	39.485	35.5667	16.5658	16.2354	2.21192	5.66636	11.6824	7.43475	8.42031	7.31185
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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