TCONS_00002635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002635
Unique NameTCONS_00002635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002635 ID=TCONS_00002635|Name=TCONS_00002635|organism=Clytia hemisphaerica|type=transcript|length=804bp
CGATCGAGGGCGCTTATACCGACTGCAGAGTACCGCCCGTTATCAAGATT
CCAAAACTCGTCCCAGTTTCCCTTTCATTCTCTGGCTTGGCGCCAAACAA
GATGGCGATGGTTGATGCATATCTCTTGAAATGAAGGGAAGAATCACACA
CACTTCAATTGGATGGTACATTCACTTTGCTGGCTCAGAATTAGAGCTGT
AATTCCTAAAAAgaGCTCCTTTGACGATGCTTGGGTGAATTGATCAGACA
ATATGGAACTCAAAATGGATGAATGCAATACTACAAATGGAATAACAAAC
TAACAAAAACGAACTTCTGAATGAGATGTTGGCAACTCAAAGGCGAACCA
ACATTCTCCTGGGCCAATTGATTgcaaagGTTTCAGAGCAACCATTACCT
AATGCAAACCCAAACCTAAACCAAACACAAATGGCTCCTTTAGATGAAAA
TGACTTTgtTCTGGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATA
ACACTCCTACAATATATGCCATTGCCTTGGCTAAGGCGATGTTTACGACG
GAAGAACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATC
GAGGACTGCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGATTGATTC
AACACCAATATAAACTAGACGAaccaaagttcaaaaaaatttggccTCAT
TGCCGGAGGTCCATCAACCAGGGTGGAAATGACGCCAAAAGAAAAGCTGA
CGTTGAAGCTGACGTTGAAGATGAGATTCGAGAGaataattaatttaaaa
ttaa
Run BLAST on NCBI

protein sequence of TCONS_00002635-protein

>TCONS_00002635-protein ID=TCONS_00002635-protein|Name=TCONS_00002635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MLATQRRTNILLGQLIAKVSEQPLPNANPNLNQTQMAPLDENDFVLADGS
NLLDVPRHNTPTIYAIALAKAMFTTEELENGMVSPKAGKRKSRTALDPNQ
VKKIKRLIQHQYKLDEPKFKKIWPHCRRSINQGGNDAKRKADVEADVEDE
IRENN
Run BLAST on NCBI

transcript from alignment at sc0000021:603228..607404+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002635 ID=TCONS_00002635|Name=TCONS_00002635|organism=Clytia hemisphaerica|type=transcript|length=4177bp|location=Sequence derived from alignment at sc0000021:603228..607404+ (Clytia hemisphaerica)
CGATCGAGGGCGCTTATACCGACTGCAGAGTACCGCCCGTTATCAAGATT
CCAAAACTCGTCCCAGTTTCCCTTTCATTCTCTGGCTTGGCGCCAAACAA
GATGGCGATGGTTGATGCATATCTCTTGAAATGAAGGGAAGAATCACACA
GTTAAGTACAAGTTTTTTGTCTGTTTAGAGCAATTCTCTTTGTCCATGTT
CTGTTTAATCCTATTTCTTTGAAGTAATATTTTAATACAGTAGAAACGTC
TTGGTCTATATAGAAAATACTGGTGTCCTGTCTCTAGTGATTTATTTTTC
TGAAGTTTATTTTCTATACATTTGATTTTAACTCGCTTTCAACACACAGG
GTACAAGTTGagctgaaaaaacaaaaatttctttcaacagGTTTCTTTAA
ACAATAAAGCTTGGGTTTCAAGTGAATAAATTTTTGAGTAAAAATGtaat
tttcattgtttataACTGTATAAGTCAGATGATGATGGCTAGTATATATT
AGGGTTTACGACGaatgaatttgtggaataaagaattgattttaaaccac
ttagtcagatacgtgtaagttttaatttttctctgggtctacacatttgt
tgtgtatgtggcatcttttgataaaacttgAGACctgttttcataaaaaa
ctttactaatggctagtttatgagtttacgacaaatgaatttgtggaata
aagaattgattttaaaccgcttagtcagatacgtgtaagttttaattgtt
ctctgggtctacacatttgttgtgtatgtggcatcttttgatgaaacttg
agacctgctttcataaaaaactttacatatggctagtttatgagttttac
aacaaatgaatttgtggaataaagaattgattttaaaccgcttAACCGCA
TACGTGTAAGTTTTAATTGTTCCCTGGGTCTACACAtttgttgtgtatgt
ggcatcttttgatgaaacttgagacccgctttcataaaaaactttactaa
tggctagtttatgagtttacaacaaatgaatttgtggaataaagaattga
ttttaaaccgcttagtcaggtacgtgtaagttttaattgttccctgggtc
tacacatttggtgtgtatgtggcatcttttgatgaaacttgagacccgct
ttcataaaaaactttacgtatggctagtttatgagtttacaacaaatgaa
tttgtggaataaagaattgattttaaaccgcttagtcaggtacgtgtaag
ttttaattgttccctgggtctacacatttggtgtgtatgtggcatctttt
gatgaaacttgagacccgctttcataaaaaactttacgtatggctagttt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCACAtttgttgtgtatgtggcatcttttgatg
aaacttgagacccgctttcataaaaaacttttacgtatggctagtttatg
agtttacaACAAATGAATTTGTAGataaatgaatattttgaaactattaa
ttcaataaatattttcatgttttattggacTTCTTTTTTGCAAATACATC
TTATGACAAAACTTGAAATAGCATGGGGGTTTGAAGATAGATCATTTTGA
AGAAGGACAATTGATGTAGGTGTTGGGCTATTTCTAccattataaagttt
tttgcatTGTCTGATGCTGAAAGACTTTGCTTTCTAAAGTgacttataat
tttttttacccattttcagCACTTCAATTGGATGGTACATTCACTTTGCT
GGCTCAGAATTAGAGCTGTAATTCCTAAAAAGtaagacttttttaatttt
tgtcttttcaCAATAAAATCTTATATTCCTTTCGAGAACATTGCTGTTTT
TCTTTCTAATGTTTAATTTGATGTCTATTTCTTTTACTGTTTAAGtcttt
aaagaaagtttttgtaTGATTTGGATAGCTATTTTATTTTCCAAGTATAT
AGATGGTAATCaaacttattaatttttttataggaGCTCCTTTGACGATG
CTTGGGTGAATTGATCAGACAATATGGAACTCAAAATGGATGAATGCAAT
ACTACAAATGGAATAACAAACTAACAAAGTTGGTGGACTATCATCTTTTT
CGAAATCTTGACGAACGCCAAAAACTCAGAAAGTTTTTCAAGCCACaacc
aaaagaaatcttttttttaaatgacaatgAATTTTATCCAATTCGAAGAA
GTCTTATTTTATTACCTTTTTTGCATTCCACAATATTTCTACTTAACCTT
TCCCACTCTTTTGTGACTTTTTTCAGAACGAACTTCTGAATGAGATGTTG
GCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGATTgcaaaggt
aattttttttcaatttctcaaaaCAACTGGACAACTTTTTTACGCAATGA
TTTAACACAACTACAAGCACATCCACGCTTTTCTAACTTGAACCTAGATA
AATTTAAAACATGCATTATTTGTctgttttttgtaaattttgcggCAAGA
TAGAACATTGGTGTCACCATTCTTTTTTAGGTTTCAGAGCAACCATTACC
TAATGCAAACCCAAACCTAAACCAAACACAAATGGCTCCTTTAGATGAAA
ATGACTTTGTAAGTATCATTTtaacttctttgtttttaacTTCATATCCA
CTGAGTTTTGAATacttaaaagaaaactttttggattaaattcccgtcaa
attttgttttcatcatCAGAAGAAACTGCTAAAATTCTAAAGCTCTGTTA
CAAACTGActtgataattttgaaaaaactcttGAGAAGGAAAGAAAGACT
TAATTTGTTTTGAGCGGGAGAAaattataattgtaaaatttacatttttt
ttagtttgaataattttttgagagagACAATTGTATCCTTTATCCTATCC
TTTATTTACTCTCTATTTACTTTATGTATTTTAACCATTATTATTCTAAA
CCAAATTACCGAATTACGAAATCAAAAACAAACACTTTTTTCGAACATGT
ATATAATTTTTTCATTCACACAGCAACGCAATTTTAATATGCAACTTTTA
GCTtacacaaaggtttctagataACTAAAATGTTCCTTTTCGTTgctttc
attactttttgctttatttccaATGTCTGAGTGTCGCCGTGCTAGATTAC
ATTTAAGTACTGTAGTGCGGTTGTACGGTTGTCTAAAGcaataaaattgt
atttttaggtTCTGGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACAT
AACACTCCTACAATATATGCCATTGCCTTGGCTAAGGCGATGTTTACGAC
GGAAGAACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAAT
CGAGGACTGCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGTAAATTG
AATTATTTCATCCACCATGGGTTGACAAATACGATTTAActtattttcaa
ggttttttgctgttttataCAAATAAGCCATGTTAAGCCTGGGAGCTCCT
CAAAAAGTTATgccttgtttttgtttttttgccatAACTTTCAACTAGTT
GTGatataaaaaatttaaactttgtttcaaaaaattggCAGTCCGCACAA
TTTTGGTTCATTGCTCTTGAAGGGAAAAAGACAAAACCAAAGGTAGCAAT
ACCTTATTGAAAAGACAATTTTGAATGGTAAAATCTAAGctttaaatact
tttttaaagaattcgaaaatgaaaataaaaacttcgAGAGCAATCAACTA
AAATGTGTGgactgtcaatttttttgaaattcgttcatataattttttta
tactttttttacagGATTGATTCAACACCAATATAAACTAGACGAaccaa
agttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACCAGGGTGGA
AATGACGCCAAAAGAAAAGCTGACGTTGAAGCTGACGTTGAAGATGAGAT
TCGAGAGaataattaatttaaaattaa

Coding sequence (CDS) from alignment at sc0000021:603228..607404+

>TCONS_00002635 ID=TCONS_00002635|Name=TCONS_00002635|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000021:603228..607404+ (Clytia hemisphaerica)
ATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGATTgc
aaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAACCAAA
CACAAATGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGATGGCTCC
AACTTGTTAGATGTGCCGAGACATAACACTCCTACAATATATGCCATTGC
CTTGGCTAAGGCGATGTTTACGACGGAAGAACTTGAAAATGGCATGGTCT
CGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCTAATCAA
GTCAAGAAAATAAAGCGATTGATTCAACACCAATATAAACTAGACGAacc
aaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACCAGGGTG
GAAATGACGCCAAAAGAAAAGCTGACGTTGAAGCTGACGTTGAAGATGAG
ATTCGAGAGaataattaaATGTTGGCAACTCAAAGGCGAACCAACATTCT
CCTGGGCCAATTGATTgcaaagGTTTCAGAGCAACCATTACCTAATGCAA
ACCCAAACCTAAACCAAACACAAATGGCTCCTTTAGATGAAAATGACTTT
gtTCTGGCAGATGGCTCCAACTTGTTAGATGTGCCGAGACATAACACTCC
TACAATATATGCCATTGCCTTGGCTAAGGCGATGTTTACGACGGAAGAAC
TTGAAAATGGCATGGTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACT
GCATTAGATCCTAATCAAGTCAAGAAAATAAAGCGATTGATTCAACACCA
ATATAAACTAGACGAaccaaagttcaaaaaaatttggccTCATTGCCGGA
GGTCCATCAACCAGGGTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAA
GCTGACGTTGAAGATGAGATTCGAGAGaataattaaATGTTGGCAACTCA
AAGGCGAACCAACATTCTCCTGGGCCAATTGATTgcaaagGTTTCAGAGC
AACCATTACCTAATGCAAACCCAAACCTAAACCAAACACAAATGGCTCCT
TTAGATGAAAATGACTTTgtTCTGGCAGATGGCTCCAACTTGTTAGATGT
GCCGAGACATAACACTCCTACAATATATGCCATTGCCTTGGCTAAGGCGA
TGTTTACGACGGAAGAACTTGAAAATGGCATGGTCTCGCCTAAAGCAGGC
AAAAGGAAATCGAGGACTGCATTAGATCCTAATCAAGTCAAGAAAATAAA
GCGATTGATTCAACACCAATATAAACTAGACGAaccaaagttcaaaaaaa
tttggccTCATTGCCGGAGGTCCATCAACCAGGGTGGAAATGACGCCAAA
AGAAAAGCTGACGTTGAAGCTGACGTTGAAGATGAGATTCGAGAGaataa
ttaaATGTTGGCAACTCAAAGGCGAACCAACATTCTCCTGGGCCAATTGA
TTgcaaagGTTTCAGAGCAACCATTACCTAATGCAAACCCAAACCTAAAC
CAAACACAAATGGCTCCTTTAGATGAAAATGACTTTgtTCTGGCAGATGG
CTCCAACTTGTTAGATGTGCCGAGACATAACACTCCTACAATATATGCCA
TTGCCTTGGCTAAGGCGATGTTTACGACGGAAGAACTTGAAAATGGCATG
GTCTCGCCTAAAGCAGGCAAAAGGAAATCGAGGACTGCATTAGATCCTAA
TCAAGTCAAGAAAATAAAGCGATTGATTCAACACCAATATAAACTAGACG
AaccaaagttcaaaaaaatttggccTCATTGCCGGAGGTCCATCAACCAG
GGTGGAAATGACGCCAAAAGAAAAGCTGACGTTGAAGCTGACGTTGAAGA
TGAGATTCGAGAGaataattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001426XLOC_001426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002635-exon-sc0000021-1491911889:603228..603377TCONS_00002635-exon-sc0000021-1491911889:603228..603377Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:603228..603377TCONS_00002635-exon-sc0000021-1510915933:603228..603377Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:603228..603377TCONS_00002635-exon-sc0000021-1575043694:603228..603377Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:605147..605208TCONS_00002635-exon-sc0000021-1491911889:605147..605208Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:605147..605208TCONS_00002635-exon-sc0000021-1510915933:605147..605208Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:605147..605208TCONS_00002635-exon-sc0000021-1575043694:605147..605208Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:605411..605505TCONS_00002635-exon-sc0000021-1491911889:605411..605505Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:605411..605505TCONS_00002635-exon-sc0000021-1510915933:605411..605505Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:605411..605505TCONS_00002635-exon-sc0000021-1575043694:605411..605505Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:605704..605775TCONS_00002635-exon-sc0000021-1491911889:605704..605775Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:605704..605775TCONS_00002635-exon-sc0000021-1510915933:605704..605775Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:605704..605775TCONS_00002635-exon-sc0000021-1575043694:605704..605775Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:605958..606035TCONS_00002635-exon-sc0000021-1491911889:605958..606035Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:605958..606035TCONS_00002635-exon-sc0000021-1510915933:605958..606035Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:605958..606035TCONS_00002635-exon-sc0000021-1575043694:605958..606035Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:606636..606819TCONS_00002635-exon-sc0000021-1491911889:606636..606819Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:606636..606819TCONS_00002635-exon-sc0000021-1510915933:606636..606819Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:606636..606819TCONS_00002635-exon-sc0000021-1575043694:606636..606819Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1491911889:607242..607404TCONS_00002635-exon-sc0000021-1491911889:607242..607404Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1510915933:607242..607404TCONS_00002635-exon-sc0000021-1510915933:607242..607404Clytia hemisphaericaexon
TCONS_00002635-exon-sc0000021-1575043694:607242..607404TCONS_00002635-exon-sc0000021-1575043694:607242..607404Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002635-proteinTCONS_00002635-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:603228..607404 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.72584	3.75585	0.510617	1.21641	8.91044	9.25362	6.85746	7.24512	8.17349	6.40174	6.61308	8.55275	5.89659	7.51318	10.9864	8.93702	14.4411	16.3237	5.71514	6.41493	19.576	16.1152	10.1197	12.2624	2.62616	3.39773	10.1359	7.24522	4.95099	3.78849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018379BEN_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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