TCONS_00002622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002622
Unique NameTCONS_00002622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2769

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002622 ID=TCONS_00002622|Name=TCONS_00002622|organism=Clytia hemisphaerica|type=transcript|length=2769bp
CCAAGCATTCTACTTCTGACTCTCTACCAATTTTCCAAGCTCACTCAGAT
ACTGCATGTAATATTTGTAATTTGCCAACAGTGCGCCATACATaagggat
tcaaaataacaaaaattacgAAAGAATCAAAAGTGATCGGAAATCCTTCT
AACACAAATATTTCTTCGCTAGCTGAAGCCGCAAAACAATGCAATTTAGT
GGATCTGAGCAAGTTTGGGGATCCTACTTACACTTTTGCTTTCATTGATA
CCGGTTTTGTGATCGGGTTCAGAGTGGAAGTGGAGATCGATGGCAGATGG
AATTTATACCATGGAAAGTACTTGATTAAAAAGGATCATAACATTTTAAA
ATGTCTACCTGAGGTAATTGATTTGGAAAATGCCTTGTTGATTTTTGAAA
CGCTAAGTAAGTGCAAACTTTGTCAGGGAAATGATGACTTTGAGAAACTT
ATTAATGAAAAAGTTGATCCTAAAGAAAGTTCTTTTAAGGACAAGCAAGG
CAATATTAGGGCTAGAATTGAAAATGATAACTTATCAGGTGTGGATGACC
TCACAACGATCCGTGTCAAAGATTGTGAGTTGATGGTGAGGAATGATGCT
ATGAGGTGCCAGCCATGCATAAAATACCGCCAGTATTTGCATAATACTGT
TTATCGGCGCTCAATGAGTCCAGAAGTACCATCCAAATTCACTGCAAACA
AACATCTAACTAAAGATTTTTTGATGATAAAGGCAACTAATCaacaaaaa
aagatcaaatcaTTGAAGCGTAGCCTTGAGTCCATGAGAACCTTTGTTAG
TCAATTGGTTGAAAGTGAAGGATGTGCTGTAGAGAACAATCTATTGAAAG
AAATATGCAACAACGTAGTTTCAACAAATGATTCACCTTTTGATGAGGAC
AGTCCTATCCACTTGCTTTGGGAACAACAGAAAAAGCAGGTGTCATTGGA
AAACAAACGGACTATGAGATGGCACCCTGTGATGCTTCGATGGTGCATAT
CCATTTACCTTAAATCTTCTGGAACATATGAGCATCTACGAAATTCTGGT
TTTTTGGTCCTGCCATCCAAAAAAACCTTGGATAAATACGTCAACTTCAC
TACCCATAACACTGGATTCAACCCTGATGTATTAGAGAATCTACTTCGAT
TAACAGAGAACCAGCAACATTTGCATGTTGGTCTTGTGCATGACGAAATG
AAGATAAAATCTGGTATTGTCTACAGTAAGAATTCTGGCAAGATTGTTGG
ATTTTGTGATCTCGGAGATATCAATAATGAGATAACCTGTTTTGATCGCC
GTGTAACTAACCAAGACGAGCATCCTCCTATTGCTACTCACGTACTCACT
CTAATGGTGTGGTTTGTTGTCAGTGATGGGGCTTCACCAAACAGGAAGTT
TTACAACTACCACAAAAGAAAGGAAAACATTATTGATGGGGTTGTTTACT
CGACGATCAATAAGTTCGACCCAACTCGtcgaatttattttatttgtgaC
GTTCCTCACTTAATCAAAACTACACGAAATTGTGTAGCAAATTCACATGC
TCATCAAAATACCAGAGAACTCTTTCTTGATGGGAAAGAGATTAGCTGGC
AGCATGTCATTGGACTTTTGGAATACGACGTTGGTATAGATCGTGATGCA
CCTGGATTTCATCAAACTAAACTGACTGTTGAACATGTGCGTTTGACACC
AAGAGCCAGGATGAATGTTGCCTTGGCGGCTCAAGTTTTAAGCAAATCAG
TTGCTGATGCCATGGAACAGCACAACCCTGATGTTACTGTCTCGACCAGA
AAACTATTCCTTAAAATAGACGAATTTTTTGGTATCATGAACGTCAAATC
TACAGTGGCAGGAATTCACACGAACAAAGAAAACTTGAAGCCGTTCAAAA
AACCTAACCCTTTAAAACAAGATGGACGTTTGGATTGGTTGGAGACAAAC
TTTCTCAAATTCTTGAACGATTGGCAAGCAGAAATAAAAGCAATTCCTGA
TGTTGACGataaaagaaaattaagaatGTGCCTTTCCCCTCAAACTCTAA
CTGGATTACGAATTACTGTTCATTCTACAATCAGATTGATTCCGATACTT
CTCAAAGAACCGGGAATAGAATTCGTTTTGACCGACCGCTTTAATCAAGA
TCCAATTGAAGAACATTTTGGTAAGCAAAGAGCAAGACTTGGTGGTTGTG
ACAATCCTAGCCTAGGTCAATATGGATCAAGTGAAGGAAAACTGATAACT
GCGAAGGATCAAGCCATTCTTGTCATGCGTGGTAACAGTTCTGGTAggaa
taaagtaaaacaaaaacctCAGATTAACATTCATGACATGACACCTCTGC
CAAAACGTCCAAAAACCGAAcaaaggaagaagaaaaaagatgacgatgat
gatggtCTATTTGGAAATTTAGCAAAATGACTTTTTAATTGCACGTAATc
aaaggaaaaaattaaaatgttaatttttcttgCTTAAAATCAATATATAA
TGGATCTTTTAGGGCAATTTGCCATTTCTATCTTTTGTTTCAGTCTCTTT
TAATGCTTATTTCATTGCCTTAATTCTTGTACTTTGTCAGCcattttggt
tttatttttcattagacttatatatgtataagaattttCAGTGTTTTCAG
GAACATTTCGAACCATTAATTAAGAGACTAGCAAACTATGAATAGCACCA
TCaagatatttttttgctttcacatacaaaaaatacacattttttataag
caaccgagttgctaagggc
Run BLAST on NCBI

transcript from alignment at sc0000021:446381..451419+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002622 ID=TCONS_00002622|Name=TCONS_00002622|organism=Clytia hemisphaerica|type=transcript|length=5039bp|location=Sequence derived from alignment at sc0000021:446381..451419+ (Clytia hemisphaerica)
CCAAGCATTCTACTTCTGACTCTCTACCAATTTTCCAAGCTCACTCAGAT
ACTGCATGTAATATTTGTAATTTGCCAACAGTGCGCCATACATaagggat
tcaaaataacaaaaattacgAAAGAATCAAAAGTGATCGGAAATCCTTCT
AACACAAATATTTCTTCGCTAGCTGAAGCCGCAAAACAATGCAATTTAGT
GGATCTGAGCAAGTTTGGGGATCCTACTTACACTTTTGCTTTCATTGATA
CCGGTTTTGTGATCGGGTTCAGAGTGGAAGTGGAGATCGATGGCAGATGG
AATTTATACCATGGAAAGTACTTGATTAAAAAGGATCATAACATTTTAAA
ATGTCTACCTGAGGTAATTGATTTGGAAAATGCCTTGTTGATTTTTGAAA
CGCTAAGTAAGTGCAAACTTTGTCAGGGAAATGATGACTTTGAGAAACTT
ATTAATGAAAAAGTTGATCCTAAAGAAAGTTCTTTTAAGGACAAGCAAGG
CAATATTAGGGCTAGAATTGAAAATGATAACTTATCAGGTGTGGATGACC
TCACAACGATCCGTGTCAAAGATTGTGAGTTGATGGTGAGGAATGATGCT
ATGAGGTGCCAGCCATGCATAAAATACCGCCAGTATTTGCATAATACTGT
TTATCGGCGCTCAATGAGTCCAGAAGTACCATCCAAATTCACTGCAAACA
AACATCTAACTAAAGATTTTTTGATGATAAAGGCAACTAATCaacaaaaa
aagatcaaatcaTTGAAGCGTAGCCTTGAGTCCATGAGAACCTTTGTTAG
TCAATTGGTTGAAAGTGAAGGATGTGCTGTAGAGAACAATCTATTGAAAG
GTTTGTTGAAAAGGAATTCTTGgtttttatgtttaaaaaaaagtttatta
ataaaagtttcaattttctttgcttttacCCAAAAATATTCAACTTTTGA
CTAACCTTGTCAAATAGGTTAGTAAGTTTAGCATCTAACTGAATTATTTC
ACAAAACGAAGTCTTTACTAAATGCGGGGTATTTTGGGTTACACTTTCTC
TAACATGAACAATATTTTCACAACAAGATTCCTCATTTAGACATTCTAAT
TGTCGACATATCATGATATTTAATGCTTTCTGTCTTTATACAGAAATATG
CAACAACGTAGTTTCAACAAATGATTCACCTTTTGATGAGGACAGTCCTA
TCCACTTGCTTTGGGAACAACAGAAAAAGCAGGTGTCATTGGAAAACAAA
CGGACTATGAGATGGCACCCTGTGATGCTTCGATGGTGCATATCCATTTA
CCTTAAATCTTCTGGAACATATGAGCATCTACGAAATTCTGGTTTTTTGG
TCCTGCCATCCAAAAAAACCTTGGATAAATACGTCAACTTCACTACCCAT
AACACTGGATTCAACCCTGATGTATTAGAGAATCTACTTCGATTAACAGA
GAACCAGCAACATTTGCATGTTGGTCTTGTGCATGACGAAATGAAGATAA
AATCTGGTATTGTCTACAGTAAGAATTCTGGCAAGATTGTTGGATTTTGT
GATCTCGGAGATATCAATAATGAGATAACCTGTTTTGATCGCCGTGTAAC
TAACCAAGACGAGCATCCTCCTATTGCTACTCACGTACTCACTCTAATGG
TCCGTGCCATTAACTTTCATCTCAATTACCCTGTCGCCTATTTTGCAGGA
GCTGGTGTCAAGGGATATGAACTGTATCATATCATTTGGGAAGCCATCCG
AATTTTAGAATTCCTTGACTTCAAGGTATCATACTGCTTGTATACTGTTT
ATATTATTTCAAGTCTTTTGGTAAATTCGTTTTAAGTTTTACCTTTCCTG
CTTGCTTATTACTTTTATAATGTCTTCAATTGAATTAAAttgaatggaat
tttttttgatttgacaaTCATTATCTGATGAAACCTTTTTGGTGTCTTTT
TAGTAGAATTGGTTTGTAAATGTGGAGACTTTTCATATTTCTAGGTGTGG
TTTGTTGTCAGTGATGGGGCTTCACCAAACAGGAAGTTTTACAACTACCA
CAAAAGAAAGGAAAACATTATTGATGGGGTTGTTTACTCGACGATCAATA
AGTTCGACCCAACTCGtcgaatttattttatttgtgaCGTTCCTCACTTA
ATCAAAACTACACGAAATTGTGTAGCAAATTCACATGCTCATCAAAATAC
CAGAGAACTCTTTGTAAGAATATCATTTAgtatgtttcaataaaaactca
TTAGTGTTTTCCCCCTCTGTTTTGTTGTCTAAATCGAAATACCTTATAAT
CACTGGATCAAAATTAAGAAAGGTACTATCATACAATGAGGCTGAAATTG
AGAATgactttgttttattttacatttaaGCTTGATGGGAAAGAGATTAG
CTGGCAGCATGTCATTGGACTTTTGGAATACGACGTTGGTATAGATCGTG
ATGCACCTGGATTTCATCAAACTAAACTGACTGTTGAACATGTGCGTTTG
ACACCAAGAGCCAGGATGAATGTTGCCTTGGCGGCTCAAGTACGTATTTT
TGAGGAGccataaaaatttgatttcagaATTTTAGACAAAACTTTTCACA
CAAAACGTTTTAATATTCAGTTGTAATTAAACTGTCTCTACTATTGATCC
CTAGCTTATACACATGTCTCTTGTTTTAGGTTTTAAGCAAATCAGTTGCT
GATGCCATGGAACAGCACAACCCTGATGTTACTGTCTCGACCAGAAAACT
ATTCCTTAAAATAGACGAATTTTTTGGTATCATGAACGTCAAATCTACAG
TGGCAGGAATTCACACGAACAAAGAAAACTTGAAGCCGTTCAAAAAACCT
AACCCTTTAAAACAAGATGGACGTTTGGATGTAAGAATATATTTATATGA
TAATATAGTAAGATAAAGGGCTCGTTATACGGTATCTAAAGAGTATCAAC
AAGACCTTTTTCACACCTTTGATAATTATTTCTATTCTTTATTTTGCAGT
GGTTGGAGACAAACTTTCTCAAATTCTTGAACGATTGGCAAGCAGAAATA
AAAGCAATTCCTGATGTTGACGataaaagaaaattaagaatGTGCCTTTC
CCCTCAAACTCTAACTGGATTACGAATTACTGGTATTTATATTTTCTGCA
ATCATTAGATGATTAATATTTTAATTTCNAGCAATTCCTGATGTTGACGa
taaaagaaaattaagaatGTGCCTTTCCCCTCAAACTCTAACTGGATTAC
GAATTACTggtatttatatttatataaaaCTTTTGTCAATCGAAACGAGT
TCTTTTTGTTGAAATACAAAACGTAAGCAGACTCAAGAAACCCTCTGATT
TTCCTGGTGGACAATGATTCATCTTATTCCCCTTCCTGAATAACAATCTA
TTGCATGAAATTACGTTACTGATAACATAATTTCTCTACTTGTTTAGTTC
ATTCTACAATCAGATTGATTCCGATACTTCTCAAAGAACCGGGAATAGAA
TTCGTTTTGACCGACCGCTTTAATCAAGATCCAATTGAAGAACATTTTGG
TGAGTAAACACATTCTCCTCAAAACAGTAAACTTTCGTTGAGACTCACCG
CTCTTATTTTTCAACACCTGGAATTGCTTTGAAACAAATCTAACGAGGGC
TGTTATTGATTGTTCTCATTTTTGACACTTTGAGTCCCTTACACTCATAT
AATTAtctcaaaatattgaaagataTACTACTTTCTTGAAGGTAAGCAAA
GAGCAAGACTTGGTGGTTGTGACAATCCTAGCCTAGGTCAATATGGATCA
AGTGAAGGAAAACTGATAACTGCGAAGGATCAAGCCATTCTTGTCATGCG
TGGTAACAGTTCTGGTAggaataaagtaaaacaaaaacctCAGATTAACA
TTCATGACATGACACCTCTGCCAAAACGTCCAAAAACCGAAcaaaggaag
aagaaaaaagatgacgatgatgatggtCTATTTGGAAATTTAGCAAAATG
ACTTTTTAATTGCACGTAATcaaaggaaaaaattaaaatgataatttttc
ttgCTTAAAATCAATATATAATGGATCTTTTAGGGCAATTTGCCATTTCT
ATCTTTTGTTTCAGTCTCTTTTAATGCTTATTTCATTGCCTTAATTCTTG
TACTTTGTCAGCcattttggttttatttttcattagaCTTGNAATAGAAT
TCGTTTTGACCGACCGCTTTAATCAAGATCCAATTGAAGAACATTTTGGT
GAGTAAACACATTCTCCTCAAAACAGTAAACTTTTGTTGAGACTCACCGC
TCTTATTTTTCAACACCTGGAATTGCTTTGAAACAAATCTAACGAGGGCT
GTTATTGATTGTTCTCATTTTTGACACTTTGAGTCCCTTACACTCATATA
ATTAtctcaaaatattgaaagataTACTACTTTCTTGAAGGTAAGCAAAG
AGCAAGACTTGGTGGTTGTGACAATCCTAGCCTAGGTCAATATGGATCAA
GTGAAGGAAAACTGATAACTGCGAAGGATCAAGCCATTCTTGTCATGCGT
GGTAACAGTTCTGGTAggaataaagtaaaacaaaaacctCAGATTAACAT
TCATGACATGACACCTCTGCCAAAACGTCCAAAAACCGAAcaaaggaaga
agaaaaaagatgacgatgatgatggtCTATTTGGAAATTTAGCAAAATGA
CTTTTTAATTGCACGTAATcaaaggaaaaaattaaaatgttaatttttct
tgCTTAAAATCAATATATAATGGATCTTTTAGGGCAATTTGCCATTTCTA
TCTTTTGTTTCAGTCTCTTTTAATGCTTATTTCATTGCCTTAATTCTTGT
ACTTTGTCAGCcattttggttttatttttcattagacttatatatgtata
agaattttCAGTGTTTTCAGGAACATTTCGAACCATTAATTAAGAGACTA
GCAAACTATGAATAGCACCATCaagatatttttttgctttcacatacaaa
aaatacacattttttataagcaaccgagttgctaagggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001419XLOC_001419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002622-exon-sc0000021-1491911889:446381..447230TCONS_00002622-exon-sc0000021-1491911889:446381..447230Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:446381..447230TCONS_00002622-exon-sc0000021-1510915933:446381..447230Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:446381..447230TCONS_00002622-exon-sc0000021-1575043694:446381..447230Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:447524..448029TCONS_00002622-exon-sc0000021-1491911889:447524..448029Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:447524..448029TCONS_00002622-exon-sc0000021-1510915933:447524..448029Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:447524..448029TCONS_00002622-exon-sc0000021-1575043694:447524..448029Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:448375..448593TCONS_00002622-exon-sc0000021-1491911889:448375..448593Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:448375..448593TCONS_00002622-exon-sc0000021-1510915933:448375..448593Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:448375..448593TCONS_00002622-exon-sc0000021-1575043694:448375..448593Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:448761..448919TCONS_00002622-exon-sc0000021-1491911889:448761..448919Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:448761..448919TCONS_00002622-exon-sc0000021-1510915933:448761..448919Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:448761..448919TCONS_00002622-exon-sc0000021-1575043694:448761..448919Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:449060..449260TCONS_00002622-exon-sc0000021-1491911889:449060..449260Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:449060..449260TCONS_00002622-exon-sc0000021-1510915933:449060..449260Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:449060..449260TCONS_00002622-exon-sc0000021-1575043694:449060..449260Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:449380..449512TCONS_00002622-exon-sc0000021-1491911889:449380..449512Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:449380..449512TCONS_00002622-exon-sc0000021-1510915933:449380..449512Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:449380..449512TCONS_00002622-exon-sc0000021-1575043694:449380..449512Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:449828..449929TCONS_00002622-exon-sc0000021-1491911889:449828..449929Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:449828..449929TCONS_00002622-exon-sc0000021-1510915933:449828..449929Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:449828..449929TCONS_00002622-exon-sc0000021-1575043694:449828..449929Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1491911889:450821..451419TCONS_00002622-exon-sc0000021-1491911889:450821..451419Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1510915933:450821..451419TCONS_00002622-exon-sc0000021-1510915933:450821..451419Clytia hemisphaericaexon
TCONS_00002622-exon-sc0000021-1575043694:450821..451419TCONS_00002622-exon-sc0000021-1575043694:450821..451419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:446381..451419 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81562e-08	0.00224799	9.25608e-10	0	0.285193	0	0	0.423336	0.0943448	0	0.355218	0.192465	0	0	0.148882	0.125317	0.202147	0.167507	0	0	0	0	8.53819e-08	0.0755201	0	0.0936981	1.28152	0.29653	0.0526095	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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