TCONS_00002616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002616
Unique NameTCONS_00002616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002616 ID=TCONS_00002616|Name=TCONS_00002616|organism=Clytia hemisphaerica|type=transcript|length=2331bp
CTTTGGGACACTCCTTATGACGCAGGAatttgaaaacatatttttgcgTG
GTCAAATTGTGAGCGGGAAGATAGAGAAACTCGAAAATAGAGTGGGCATT
ACAAATGGAAAGTTTTTGTATAAATTTGctgcaaaatgttttgaaattaa
tttcattTGTGTACAGAATTTTTAAACTAGGAGAGTTGGAATAAAGGGAG
TATATGTTCAATATAGAAGAAATTTAGcatctgttttgaattttgttcGT
TCAGggtcatgaatatttttctacgcttttgaaattgtaaaaccatataa
gaaaataaagcttccatggccaaaatgttaagaatgagttaagaacattt
taaggcttcgcggactcgaaAATTTTATGCCTGAGTTAATTTAGTGAATT
TCGAAACTGATGCAGAGTCATGTGACTTTTAACATAGACTGGGTGGTCCG
GGCAATCAGAGCAACTGAAATCTTTCACCATGTTAGtttttaaaagtaca
aaaatagcaaaatgaatttatttaaaacGTGGTTATTGGCATTATTGATG
TCACTGATGGTAACCGCATCATCGGCAAAATCTTTGAGCTCAGAAACAGA
CTGGGAAGAGAGATTAGAAGAAGAAGTGGAAATTCTCAGAACATTAAGAG
AAGAAATTGAAGATTCAATGAGTAATGATCAAGAAAAGCACATACCAGAT
GAAACAGATATCGACCAAAAATCTGGTACCAACGAAATACTTGGCAACGG
AACAAAAAAAGACGGATCAACGATGACTGAGGTTGAAATTAACGAACTCT
TAGgTTATGAAGGTGACGAGATGATATTGTCAGAGGAACAACAAAAAAGA
GGAGTGAGCACTAGTATACGTTTATGGAGAGATCAAAACACTGGCGTTAT
TCATATCCCTTATGAGATTGATAGTAGTATTGCTTCAAGTGACCATCCGA
AAATCTTGCGACATATTTCTGAGATGAATGAAGCTATTCGATGCAGTCAA
GAAGCTTGGAAACCAAAAACTCCTCAAGACAAACACTATGTTCTCTTTCG
AAATTCAGCTGGATGTTCAAGCTATCTTGGCATCACAAAATTTCAAGATT
CAAAGGACCCATCAAAAACTTACCAACCAATCAGTTTAGCTGCTGGGTGC
ATTAGATTCAACCAAGGAACGGTTTTGCATGAGATGTTACATTGTATGGG
TTTCAGTCATGAACAATCAAGAAGTGACAGAGATGAATATGTCACCATCA
ATTGGAGCAATATAATTGCAAATAGAGAACGTAATTTCCAAAAGGTCTCA
AACATGATGGATGGAAGCAAAGAAACAgATTACGATTATGGTTCAGTACT
CCATTACGGTCGAAATTCGTTTGGAAAAACTGTAAATGGAGTCAAACAAG
AAACAATCACTCCCAAAGATAGTAACGCTGCGATTGGACAAAGAAATGGA
ATGTCAAAGCTGGATATCGAAGAATTAAATCTTATCTACTGCCCGGAAGC
ACCAGAAACAACATCTGCCGAAACAACACCTGCCAAAATGACCACCCCTC
TAACTACAACGACAACCATCTCTACCACAACAACGACTACCCCTACAACG
ACAACGACTACGACCACCCCTACAACAACAATGACGACGACAACCCCTAA
AACGACTACGACCACCCCTAAAACGACTACGACCACCCCTACAACAACAA
CGACTACGACCACCCCAACTACCACTACGACAATCCctaccacaacaaca
acaacgaccacccctaccacaacaacaacaacgaccacccctacaACGAC
AACGACTACGACCACAACCCCAAGCACAACAACGACTGTGCCTGCTACGA
CAACAACGTCCACATCACCTAAACCAAAATTACAATCACTGTTCCGGTGT
TCTGGTGTTTGTCAAGCGAACCAGTGTTACCAGATAAGCTCAAGAAGATT
GACAGCGAActcaaaagGTTACCAATCGACCAACGCCTGGCGCAGTGGTT
TTATTGCATTCCGTTTTAAAGATTGCTTGATGAAGAAAATCTGTTCTGAT
GATGATTTTTACAATCTACAAACCAAGAAACTTTGCTTGAGTATTGATCA
CAAGCGTACCAAATGGTGGTGGTCACCTAGACTAGTAGTCTATTCAAGAG
CCTTCGTCAATATGCGACATGTGAACTACGCACCTAGGCGTACCAATGGA
ACTTATAAACTTGACATTAATATGAAATGCAAAAGTAGTAATTGGGGGTA
CACTTCAAATAAACAATATCTCATTACGTGAGGGAAAATGCTGATTCAAA
TTTGATTACGAGCAGCAAAGCAGCCAGATGA
Run BLAST on NCBI

transcript from alignment at sc0000021:407448..419325+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002616 ID=TCONS_00002616|Name=TCONS_00002616|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000021:407448..419325+ (Clytia hemisphaerica)
CTTTGGGACACTCCTTATGACGCAGGAatttgaaaacatatttttgcgTG
GTCAAATTGTGAGCGGGAAGATAGAGAAACTCGAAAATAGAGTGGGCATT
ACAAATGGAAAGTTTTTGTATAAATTTGctgcaaaatgttttgaaattaa
tttcattTGTGTACAGAATTTTTAAACTAGGAGAGTTGGAATAAAGGGAG
TATATGTTCAATATAGAAGAAATTTAGcatctgttttgaattttgttcGT
TCAGggtcatgaatatttttctacgcttttgaaattgtaaaaccatataa
gaaaataaagcttccatggccaaaatgttaagaatgagttaagaacattt
taaggcttcgcggactcgaaAATTTTATGCCTGAGTTAATTTAGTGAATT
TCGAAACTGATGCAGAGTCATGTGACTTTTAACATAGACTGGGTGGTCCG
GGCAATCAGAGCAACTGAAATCTTTCACCATGTTAGtttttaaaagtaca
aaaatagcaaaatgaatttatttaaaacGTGGTTATTGGCATTATTGATG
TCACTGATGGTAACCGCATCATCGGCAAAATCTTTGAGCTCAGAAACAGG
TGAGAGTTTGTTTGAATTAGAAACTGATCTCCCCCGCCTGACTCAAATAG
TCTTTAACTTTAGTAAAGGGGGACAAGTTGAGCAGGTTTTGATCATGGCA
CCATCAATTTACGATTGACGCTCTCTGACTCGCTATTCTAATGTCCGATA
ATGTTAAAAGTTACCGTCAACAAAGACCTCTCATAAACGATGTTGTACTA
TATCGATATGCTCacttatttgatgaaaatccaatttcccttgaaaattg
aattagagagcgtcgactGTATGTTATTTTACCTTGATTTCTACAATATA
GTTCAACCAGGGACCCCAATCGAACAAACTTTAAATCTTAATTTCACTTA
AACAAATCCCCAAAGCCCTGCTGTTGATTCCGCTAATATGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgggggggggggggccgtacggggtt
tgcgatttccgaaataccaaataatattgtcaaaatttccgaaattccgt
aaaagaatacttgcaattccgataccgaatttttgaggtatttttcctcg
ttttgactaatttttcataaaatttgatttttcatgtacgaattccgaaa
aaaggggataaaaaatttcgaaatttcggaGCAAAAATTCATGCATTTCT
GATACCGACACAATTTCAGAATTctgaaataccgaaggaattttcccgat
ttccgaaattccgaagaaaaacgGGTCGAtctccgcaattccgaaatccT
GTACGCCCCCACTATTATGGGAGACACAGATAGAAGTGGGAGTGTAAAAA
AACTCTAGAAAAGAGTTCAGATAGCCTTTGGGATAAAGTAATGATGGGGA
AGtgaattatgaaatattttgacACTTTTCAGACTGGGAAGAGAGATTAG
AAGAAGAAGTGGAAATTCTCAGAACATTAAGAGAAGAAATTGAAGATTCA
ATGAGTAATGGtaattttgttttagttcttcTCGCGTCAAATTCATTCTG
TTTTATCATGATCATTTCTATCATTTTTAACATCCGTAATTATTTTTTGA
GTATCGCCACAAAGAAGTTCCATTATTCATCcaataatattgaaagccac
catcatcaagaaactctcataaacgacgctctattatttgatgaaaatcc
aattcccctggAAAATCGAATTAGACAGCGCCAATAGAACTTttaataaa
ttacgtcacaaacatcacttgtttcgtattcaaacaattatcgTGGTGag
tatgtcccttgagacataaatgatttttctatgaatagaaagtagtttca
ataaaaactgctgggagttaatcaccatggcaataatttcaaaacgaggc
aagtgatgtttgtgacgtaatttatgaaaaggttattatacttttttggc
aaaattaagttcgaaaatagaaaaggaaatgctgaaaatatATTACTAAT
ACTGGAAAATAGTCATGGACTTTGATACTTTTTGACCAACACTCAATTTT
TTGCCTGTAGATCAAGAAAAGCACATACCAGATGAAACAGATATCGACCA
AGAAGCTGGTGAGTTGGATTTATCGATTTTTGAATgaataaatattataa
attgTGCCTTTAAAATACGGCTTTTTACCTCGAGCCATCTTGGAAGTAca
gaccattgagtttaaagcccgaaggatctagcagttcctttgtttttgag
gactgcattttttgaaattactttcaatccagcgtttgtgtaaaacCCAT
GCGCGGGCGTTCTGTatggaaaataagtggcttcatttctcaTCAAGAAG
TCTCGatagtctagcccttcgggcttggaagtcaatggtcaGACTATCTA
TTTTTGTCATCCACTCCTAGTTTGCATAACTATAAAACTAACACACGATT
TCAAGAGTTAATGGCGGAGAATAAAGGTTTTCCATGTAATTGAAATAATA
ATATCTCGTATTAGTCTAGGGTGACCCTTACAAGTAGTACTTATATGATA
TGCACctctgcaatgtcttctgaaatTACACCACGGACCTCTGAcctagc
tgattggttgtaagtgacgtaaaatcagtcaatacatcacCTTTAACCAA
TCacctgttgggtccgtggaagacattacaatggtgcaAATCATGAATAT
ATGGGTCCCATGGGACCCCAAAACAGGTTTTTGCCAAGCTGATAAGGATT
GGTAAAATTTTACAGCTCTATACATATGACTCTGAAAGATAAGCAGAATT
AAGAGATTAAGCCAAGTCATTTTACTTAACCTTAGGTACAAACGAAATTC
TTGGGAATGAAATCAAGAAAGAAGATGCatcaggtttgtttttgtaGTCC
ACATGGTTTTAGATTTGCAGGACTCTATTGAAAGTCAAATACAATTTGGC
GAAAAATAGTTTAGAAAAGAATGTGTGTCTAGATTCGACACTCTTGGCAA
TAACTCCTAACCACTTAAAATTCTCCTTTACTTTTGTCTGTAGATCAAGG
AAAGCACATACCAGATGAAACAGATATCGACCAAAAATCTGGTGAGTTGG
ATCACTATCTATTTATCAATGAATGATACTATAAATTATGCCTGTTACAT
TACGACTTGGAGGCTTACCTTTCTTCTCTCTATTAGAAAAGTCCCTTCGA
GATTATCTTTCTAACTGGGCATAACTTTttagcatagcaaaaatgagcgC
TGAGAAATCTTTAGATGTCTGAGACAGACAACCACCTATAAAGGTCTATA
TAGAAACTCGCAGAATCTAGAAAAGCTTAGATTTTACCTTATTTTCACCT
CAAAACAGGTACCAACGAAATACTTGGCAACGGAACAAAAAAAGACGGAT
CAAGTATGTTACTGTAGTAGTAAATTcattttagaatttcaaaattcttt
taaaagccAAACTCAATTTCGAAACAAATTAAATATAGAATTTTGTCCAA
TTTTTACTTGAAGAATTCTAAAGATTTCGTCTCGCAGACGAAGAGATGCT
CAAAGAGCCCTCTATCTATATCAACATCTTTCTCCTTTTTCAGCGATGAC
TGAGGTTGAAATTAACGAACTCTTAGGTAAGCTACTTGATAATTATTTCT
CTATTATTCATGTTTAGAGCTATTTTCAGCGACTCAACCGACTTCTACTG
AAATAGGCAATCAATGGAGCATAACAAAAGTTTAATAAATTGAATACACA
AGGCTGCCTTCCTATTCAATTGCTAAACCCcagtgtcacagacccgctgg
gattccatccccactggaagaattggccgaaaatttcttccccggtggga
aaataccctggaattccTTCCTTTTATTTCACCCCtgcttgaaattcaat
gttcaaaaattgcactccTAAACCATTCCCAACtggattttttaaacttt
gaacaatagaattgctACTCCTATTGGGATTTAAATAGGGAAATTTTATC
CCCCACTTGGGATAAAAGTTACACCGGAGCTGTAAGAAAGGGTTGTATTG
CTTCAATAGACGATGTCgactttccgaattctccccgaatgattacccat
gatgcattacaccaaaaattcacggaaagtcaatatcgtccgtgaatttt
tttgcgcaatgcatcatgggtaatcattcggggagaattcggaaagccga
tatcgtctattgacaAACATCAAACCCAGTCGAATGGCAAACTTCGATCA
AATGAATAGAATCGTAATGTTTTGTACGAAAGCACGGGCGTTTGCCACTT
AGTAGtcttttttgtttaaattcaaagttAGTCTCAAACACTCGGTTTCT
TGCGGTGCttaaaaacattacgtcacgaaTATCAAGAAATCGTAGATTAA
AATTATCTGGTACGTATAATggaataaatgaaaaaaaattactgacNAAT
CGTAGATTAAAATTATCTTGTACGTAAATGGAATAAATGAAAAAACTgct
gaaaattgcattttcaggTTATGAAGGTGACGAGATGATATTGTCAGAGG
AACAACAAAAAAGAGGAGTGAGCACTAGTATACGTTTATGGAGAGATCAA
AACACTGGCGTTATTCATATCCCTTATGAGATTGATAGTAGTAGTAAGTC
ACTTTACTTTAAGGTAATCAAACCTTTCTAATAAGTTACTGTTAAAAAGA
CAAAACTTCCAGTCAAGGGTCCAACTTTAATCTTCCATTCTGCTGCAGCG
TAATTTAATTCCTATCAACCTCAAAATCAGGATAATCGAAATTACAATCC
AGTAGGGATTCTCTTAGAACTCTTGTCGTATGTATTCGATATCAACCCGG
TACTTATTGAAGGTTTAAATTGTAAATCAGAATATCCAACGAACGAATTG
ATATCACGAGTTTTCGCAAACAAAACCATTGATCGGAGGGGAGAGGTTTC
CGAAGGTACCAAATTATACCGCTAAATTTTCTGACGAACCAGAATATCGG
ATATTTGGCATTCTAATAATCGAATCGAATGATACCAGTCATTGTTACGT
CAAATACCGGAATACTGGTAAATACCGGATCCTCGGAAGCTTCTCCCTAT
TGATctagacggtactaatcgaacgttcgattgtgatcgaagtaatcaat
aatgatcgataataatcgaaaGGTGGTCTATcggtgatcgaatactcact
cGACTCCAGATTATGTCATTTTCTTCCACCATtttcgattacttcgatca
ttatcgattacttcgatcattatcgattacttcgataaaAGAATTTATCG
GTAAGTACCGTCTGGATTGATCAATCTTTCTTTCAATTCAGTTGCTTCAA
GTGACCATCCGAAAATCTTGCGACATATTTCTGAGATGAATGAAGCTATT
CGATGCAGTCAAGAAGCTTGGAAACCAAAAACTCCTCAAGACAAACACTA
TGTTCTCTTTCGAAATTCAGCTGGGTAAGTGGgaccaaaaaagaaaatca
actgtttgcaaaaaaattttattttattgcaaGAAATTCGAAGAACTTCA
TAACAACATCTATCTAATGTCtcttcatataacgttagatgaacgttgaa
acagcgtTGATTACTAGTTGTGTTTAGTGGTTTACCTACACCACTGTTGA
ATCCGATTTGGTTATCATGAGCAATGTTCTTCGATAGTTCTAACGAAGTG
GCCTGCCTCCTATCGAAGTATAACTATGAACCATGGTATAACTATCGTTT
AATTCGTAGCTTCCTTTAATTTCGAGCGAACTTGATTCCTAATTCGAATT
TCGACTACAAGTGATACATAGCTGGAAAAAATATTGAGATTGCTGTTGAT
TTTTTATAGATGTTCAAGCTATCTTGGCATCACAAAATTTCAAGATTCAA
AGGACCCATCAAAAACTTACCAACCAATCAGTTTAGCTGCTGGGTGCATT
AGATTCAACCAAGGTAGGAATGTACTTACTTAGAGGGAATTCACGCTTAA
AGGACGTTATAGAATGTacagtagcgagtttatgtatttgcacctTTGAG
GACGAGGGAGGTACTGAAGCGAGGACACAAAGAACAAGGACCATACAATA
GCTGATTTGCCGTCGTCCTCATTTAGTtaggatgtagacaaattagaGTA
TTAGCGACCCCGTcgaagaaaaaatacaaaaactcaGTAATATCTGAACG
GTGGTCACAGAAAAGGTTAAACAGaatatgaaaaatatctaataaaaaaa
gaaactcTCCCGGCATTAAATCTTAATACCTTCTTTAACCGGCGTTACTA
TCACTTAGATTAAAGCATTATACCAATTTAACGTCTTCTTCTTTCATTTC
AGGAACGGTTTTGCATGAGATGTTACATTGTATGGGTTTCAGTCATGAAC
AATCAAGAAGTGACAGAGATGAATATGTCACCATCAATTGGAGCAATATA
ATTGCAAGTATGCAACTCTTaatattgttaaccggttactttttcgaagc
gggctacatggctttttgcgcaatgcaattggttcttttcgcatgacgac
gggcctacattgtccagagttgcccNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcaacctcgcaag
ctcggtcgttacttgacctcgggcaatatttctcagtacagccctcacta
accggtcattattgtattattgttaaccggttacatTTTCGAAGTGGGCT
acacgactttttgcgcaatacaattggttctttttcgcatgacgacgggc
ctacattgtccagagttgcccgtcgtcaggaaaattcattgtgacgtcac
tttttcaaaggaaaatgaacaatgcgttgacatcatttctctcatttttt
attgctgacgtcagaaattatagcaattttttatctcttttcgcttgttt
tttctgctttattttactatttttcctggataaagcgctaaaaatcaatc
gaagctgaaggaaacggttaacagatacaataatgaccgttttttttcgg
gctgtactgaaaatattgccctcagtcaacgcaacaacctcgcaagctcg
gtcgttacttgacctcgggcaatatttctcagtacagccctcactaaccg
gtcattattatATTAGAGTTCCAACAAAGTTTACAACCAGTGTCCGTTAG
CCTATACTACagtcatggttgaaatatattgagaatttcggttattttaa
cgtttttcaagatttaaagttccgacgagaaagtcgattttggtttgggc
tatctctttaatttaatcgaatatttcaattttggaggggttggcagact
tccagtctatattctgagccttattggactattttcgaacttttggatcc
tcagatcctaagttCGTAAAtgttaagtctagcgttaaactcagagttaa
aattctacctttccaacctactttagagcacttacaaatcgattgtggtt
tcaaaacttccctgtgaatttcccttttttctcaattattatgaccttga
ttgtggACCTTGGCTACTTGGCTACATTGTTGGACCTTTACTACTTTTTC
GAGGGCTTTTAGTGAAACGTATTTGGGGGCTCAAAACGTTTTATATGTCA
CTTTAACAAAAACTTAGAAAGGAAAGAGTTCTTTCAAACACCCGGGGGGG
gcgtacttaggcaaatggagggttacggtatgtgccgcccttaagggtac
cttttttggatttccaaagtcccgctaagggtcagaaaaatcagaaaatc
aaatttcagtcccactaagggtctttttaccccctgaaagatcaaaattt
ggtcaaatttgtcccgctaaggtaaaattctcaaaatttttctttgtttt
ctccttaGTCCCGGTCAGGGCCCAgagttcgaaagtcgggtggcaccccc
cctgtcagcttgcaaccctagTGCCCCCCAGATTCAAACAAAAGTATTGA
TTATAATCAAACTGGTAGCGATTACACTACGTCCaccaataaaatcaaaa
aggtGGTCAAGTGGCTGTGGGAACGAGATTGGATTGAAATCCTATGAACT
TTCACTTCTATTAATCTTCAATTTGTTTTAGATAGAGAACGTAATTTCCA
AAAGGTCTCAAACATGATGGATGGAAGCAAAGAAACAGTAAgcatttgaa
ttcaaaatttggtcaaagcaAAACATTTAAATTGTAGATAATGTATTGTG
ATGTTCAGGGAATTGAACTCAGAATTTAGATAAGGGTGTAATTATGACAT
TTGGCTTCTTACCAAATAGTCAAGTAGACCCTAacctttatcccactaaa
accatcccaatccttttttgacgtgtttttctattgtctattggtgtgaa
aaaaggactggaacagctttagtgggataaagcagaCAAGCAGacatgcc
cgcgcggcaattggtagctacggttgaaaaggtgtatatcAAATTAGTGA
AGTATTATCCTTAAATtaataatattttgacttttcatGGCTTGTACCCT
TAAAAGAAGCCAAAAGGGGACcttatttgttatttttgtaacccttattA
GAGAGAGTTGGGAAGGTAAAAACCAAGACTTACGTCcgcttatctgatat
tccgatgacGGATTGGCGGCCACCCATNGAGAGTTGGGAATGTAAAAACC
GAGACTTACGTCcgcttatctgatattccgatgacggattggcggccgcc
cacgctaaagctcttaaggagcgggccaatttcccggagaggaatgatag
tcggtcTTTGATGTGCCacatccccagtcgggttcaactacccttgcgCG
TAAAGGTAAAAATTTctgttggacccgccaatccccgaaaacaagggctg
ggttaccagacctcccgctgcaaaaccCTTGACGCGgccttgcaaaattc
cgtaatctaagccttccagatgttgaaaattttcccgatctttagagctt
tagcgtttCGGATGAAAATCTCACCATCTGGGTGCTACATAATACGCCCG
TTTACATACCAAACCCATTAAATATTATCCTATTCaacttttcttttgta
ttttatttaggATTACGATTATGGTTCAGTACTCCATTACGGTCGAAATT
CGTTTGGAAAAACTGTAAATGGAGTCAAACAAGAAACAATCACTCCCAAA
GATAGTAACGCTGCGATTGGACAAAGAAATGGAATGTCAAAGCTGGATAT
CGAAGAATTAAATCTTATCTAGTAAGTCATGTACCATGAAAACACGGGAA
AGAATTCCCAACAAATTTGATAACACGCTTGTCTCTGCCTTTTTATCTTT
CTTACTTTTAATCAGTGTGTCCATCAAAACATgaatctcaatttttcttt
catagCTGCCCGGAAGCACCAGAAACAACATCTGCCGAAACAACACCTGC
CAAAATGACCACCCCTCTAACTACAACGACAACCATCTCTACCACAACAA
CGACTACCCCTACAACGACAACGACTACGACCACCCCTACAACAACAATG
ACGACGACAACCCCTAAAACGACTACGACCACCCCTAAAACGACTACGAC
CACCCCTACAACAACAACGACTACGACCACCCCAACTACCACTACGACAA
TCCctaccacaacaacaacaacgaccacccctaccacaacaacaacaacg
accacccctacaACGACAACGACTACGACCACAACCCCAAGCACAACAAC
GACTGTGCCTGCTACGACAACAACGTCCACATCACCTAAACCAAAATTAC
AATCACTGTTCCGTGAGTAAAACACTAAACCTCAATCATgctatgaaaat
atttatatcCTCACCTAAGTTTAATTTAATTTCTTAATGTTATTCAAGGG
GTAAATTATCCAAAAAATTCGAACACTTTTCCAAAAATCTcacaaaaaat
ctaaataaaccccgaaaaatttcaaaatatctttcaaCCTATCGTACact
attttggaatattttaacttttgatGTTATCCATGCTGCTTTTTCTCCGC
CCCCTCCTCCTATCCTATCACGCACAAAATTTTATCCTGACTCATAACTT
CAATCCCTGGAAGTTTAGAGtaatttccgaaaaattttgataatttcttg
ATTCAATTTTGTATGTCATTTTTCTTCAGGGTGTTCTGGTGTTTGTCAAG
CGAACCAGTGTTACCAGATAAGCTCAAGAAGATTGACAGCGAActcaaaa
ggtaaaaaaaaaattgaagaaaaaaaatgagaacaagGAATTATTACAGA
CACTGGAGAAACAACGgactgatttttgccaatttttcatGTAAAAGCCT
TGtgcgcagtaatgacattattgttcatcctccttccaccattaaatgat
ttttcgtagtATTTTTATTGCAGCTCCTCATCATGGAGCAGTTATCCAAT
TCCCAAGACTTTAAGCTTTCCTCCAAGATTCAAGAGGAGATTTCATCCCA
ACTGTTgaaagaagttccaccggggctgtgagacaggtgtATCAAAAATA
GTTCGAATTACGGAGGGTAATCGAAGGTAATTCACTCCCCAACTAACAAG
GGGACCAatagttcgaattacaaaaagattcgaataatagagttTCGAAT
gagagagagagttgactgtagcGTTTTATAGATATTTAAAATCGTCTTTT
TTCCACCAGGTTACCAATCGACCAACGCCTGGCGCAGTGGTTTTATTGCA
TTCCGTTTTAAAGATTGCTTGATGAAGAAAATCTGTTCTGATGATGATTT
TTACAATCTACAAACCAAGAAACTTTGCTTGAGTATTGATCACAAGCGTA
CCAAATGGTGGTGGTCACCTAGACTAGTAGTCTATTCAAGAGCCTTCGTC
AATATGCGACATGTGAACTACGCACCTAGGCGTACCAATGGAACTTATAA
ACTTGACATTAATATGAAATGCAAAAGTAGTAATTGGGTAAGCCCTTTTA
GTTTAAAGTCAAGtagtttttctcgaaatattACCATTGACAACACACAA
AATAGCGAGTTCATGTTGGAGATCTGGTCCTGTTTTTAAACGCAAATACA
CACAGTTTTGTAACCTAACGTAACGTCAAGAATTTTGTCCTTTCAACCAC
AAATTGTACACTTCTGTGGACGAAAAATTACCCGTTTCATGAAGCGTTAT
ATTAATATTCAAAGTTTTCCTGATTTCCCGAATTTCTCAAACatgaaaac
actaaacacaaaaatattccaGACGCATTTCCGAGGtcttttctctattt
tttcagAACATactgacaaaaagttttttttgctgtGTGAAAATGCGTAT
ACAACACCTTGCGGCTTTTGAAATGGCCGCGTACCACGTTGAAATTACTT
GTAAGCCTACCCAAAGTTTTGGTCTTTTTTCTGTTGAAATATGGCAATAA
AATAACAGGGAATTTTTGCCGGCAATGAGAAAAGTTATCCTGCTGTAAAA
GCCAGTTGTATCATcagattttccaattttttgttcttttttttctcttt
ttagcttGCCTTATTCGCACGAAGGAGGATTTGGTATTCCAGGGGTACAC
TTCAAATAAACAATATCTCATTACGTGAGGGAAAATGCTGATTCAAATTT
GATTACGAGCAGCAAAGCAGCCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001418XLOC_001418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002616-exon-sc0000021-1491911889:407448..408046TCONS_00002616-exon-sc0000021-1491911889:407448..408046Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:407448..408046TCONS_00002616-exon-sc0000021-1510915933:407448..408046Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:407448..408046TCONS_00002616-exon-sc0000021-1575043694:407448..408046Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:409030..409107TCONS_00002616-exon-sc0000021-1491911889:409030..409107Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:409030..409107TCONS_00002616-exon-sc0000021-1510915933:409030..409107Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:409030..409107TCONS_00002616-exon-sc0000021-1575043694:409030..409107Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:409658..409671TCONS_00002616-exon-sc0000021-1491911889:409658..409671Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:409658..409671TCONS_00002616-exon-sc0000021-1510915933:409658..409671Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:409658..409671TCONS_00002616-exon-sc0000021-1575043694:409658..409671Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:410655..410688TCONS_00002616-exon-sc0000021-1491911889:410655..410688Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:410655..410688TCONS_00002616-exon-sc0000021-1510915933:410655..410688Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:410655..410688TCONS_00002616-exon-sc0000021-1575043694:410655..410688Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:410956..411000TCONS_00002616-exon-sc0000021-1491911889:410956..411000Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:410956..411000TCONS_00002616-exon-sc0000021-1510915933:410956..411000Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:410956..411000TCONS_00002616-exon-sc0000021-1575043694:410956..411000Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:411191..411223TCONS_00002616-exon-sc0000021-1491911889:411191..411223Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:411191..411223TCONS_00002616-exon-sc0000021-1510915933:411191..411223Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:411191..411223TCONS_00002616-exon-sc0000021-1575043694:411191..411223Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:412115..412240TCONS_00002616-exon-sc0000021-1491911889:412115..412240Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:412115..412240TCONS_00002616-exon-sc0000021-1510915933:412115..412240Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:412115..412240TCONS_00002616-exon-sc0000021-1575043694:412115..412240Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:412939..413071TCONS_00002616-exon-sc0000021-1491911889:412939..413071Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:412939..413071TCONS_00002616-exon-sc0000021-1510915933:412939..413071Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:412939..413071TCONS_00002616-exon-sc0000021-1575043694:412939..413071Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:413457..413560TCONS_00002616-exon-sc0000021-1491911889:413457..413560Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:413457..413560TCONS_00002616-exon-sc0000021-1510915933:413457..413560Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:413457..413560TCONS_00002616-exon-sc0000021-1575043694:413457..413560Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:413950..414054TCONS_00002616-exon-sc0000021-1491911889:413950..414054Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:413950..414054TCONS_00002616-exon-sc0000021-1510915933:413950..414054Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:413950..414054TCONS_00002616-exon-sc0000021-1575043694:413950..414054Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:415779..415834TCONS_00002616-exon-sc0000021-1491911889:415779..415834Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:415779..415834TCONS_00002616-exon-sc0000021-1510915933:415779..415834Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:415779..415834TCONS_00002616-exon-sc0000021-1575043694:415779..415834Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:416758..416918TCONS_00002616-exon-sc0000021-1491911889:416758..416918Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:416758..416918TCONS_00002616-exon-sc0000021-1510915933:416758..416918Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:416758..416918TCONS_00002616-exon-sc0000021-1575043694:416758..416918Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:417053..417459TCONS_00002616-exon-sc0000021-1491911889:417053..417459Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:417053..417459TCONS_00002616-exon-sc0000021-1510915933:417053..417459Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:417053..417459TCONS_00002616-exon-sc0000021-1575043694:417053..417459Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:417827..417898TCONS_00002616-exon-sc0000021-1491911889:417827..417898Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:417827..417898TCONS_00002616-exon-sc0000021-1510915933:417827..417898Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:417827..417898TCONS_00002616-exon-sc0000021-1575043694:417827..417898Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:418357..418634TCONS_00002616-exon-sc0000021-1491911889:418357..418634Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:418357..418634TCONS_00002616-exon-sc0000021-1510915933:418357..418634Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:418357..418634TCONS_00002616-exon-sc0000021-1575043694:418357..418634Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1491911889:419240..419325TCONS_00002616-exon-sc0000021-1491911889:419240..419325Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1510915933:419240..419325TCONS_00002616-exon-sc0000021-1510915933:419240..419325Clytia hemisphaericaexon
TCONS_00002616-exon-sc0000021-1575043694:419240..419325TCONS_00002616-exon-sc0000021-1575043694:419240..419325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:407448..419325 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0417975	0	0.0473253	0.00926008	0	0	0	0	0	0	0	0	0.0368755	0	0	0	0.167476	0.416749	0.00159114	0.148783	3.18098e-08	0.153751	0	0	0	0.0560713	0.389726	0	0.0556704	0.0567575
Blast
[Close]
BLAST of TCONS_00002616 vs. Swiss-Prot (Human)
Match: ASTL (Astacin-like metalloendopeptidase OS=Homo sapiens GN=ASTL PE=1 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 3.122e-23
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 2 
Query:  875 WRDQNTGVIHIPYEIDSSIASSDHPKILRHISEMNEAIRCSQEAWKPKTPQDKH-YVLFRNSAGCSSYLGITKFQDSKDPSKTYQPISLAAGCIRFNQGTVLHEMLHCMGFSHEQSRSDRDEYVTINWSNIIANRERNFQK--VSNMMDGSKETDYDYGSVLHYGRNSFGKTVNGVKQETITPKDSNAA-IGQRNGMSKLDIEELNLIY 1489
            W    +GV+ +P+ + S         IL  ++E   +  C +      T QD+  ++      GC S +G          S   Q +SLA  C++  +G VLHE++H +GF HE +R+DRD Y+ +NW+ I+   E NF K   SNM+     T YDY SV+HYGR +F +   G+   TITP  + +  IGQR  +S  DI  +  +Y
Sbjct:   94 WPMGGSGVVEVPFLLSSKYDEPSRQVILEALAEFERST-CIRFV----TYQDQRDFISIIPMYGCFSSVGR---------SGGMQVVSLAPTCLQKGRGIVLHELMHVLGFWHEHTRADRDRYIRVNWNEILPGFEINFIKSQSSNML-----TPYDYSSVMHYGRLAFSR--RGLP--TITPLWAPSVHIGQRWNLSASDITRVLKLY 279
The following BLAST results are available for this feature:
BLAST of TCONS_00002616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASTL3.122e-2333.97Astacin-like metalloendopeptidase OS=Homo sapiens ... [more]
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