TCONS_00002607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002607
Unique NameTCONS_00002607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002607 ID=TCONS_00002607|Name=TCONS_00002607|organism=Clytia hemisphaerica|type=transcript|length=470bp
TGGTTATTAACATCATTGGACACGTCTTGTACGTCATATTCTCCAGCAGC
ACTTATGTCCTCAACTCCATCGTCTCCATGATCATTTTTTTCACCACGCT
CTTCTACTTGTTAAGCTCATCTAAAGACGAATACAAACTCTTAGAATGGT
TAACTCAAGTTAGCATGGGGACGAGGCTAGGTGAATCTATTAACAATGCT
GTACAAGAGGTCTTTGGAGCTTCATTGAAGATGGCATGTTTTTATGGTGT
TTACACGTGGATTACGCATAGTGTGTTTGGAGCAAATCTTGTCTTTATAC
CTTCAGCATTGGCTGCCTTGTTGGGAGTTGTACCCTTTATTGGGACCTAT
TGGGCTGCCATACCAGCTTGTCTCGAACTCTTGTTTATACAAAATGATCA
AATGAGAGCTGTGTCGCTTATCGTTGCTCATTTTGTACCTACTTATGTGG
TAGATACAGCTATCTACAGT
Run BLAST on NCBI

transcript from alignment at sc0000021:195379..201074+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002607 ID=TCONS_00002607|Name=TCONS_00002607|organism=Clytia hemisphaerica|type=transcript|length=5696bp|location=Sequence derived from alignment at sc0000021:195379..201074+ (Clytia hemisphaerica)
TGGTTATTAACATCATTGGACACGTCTTGTACGTCATATTCTCCAGCAGC
ACTTATGTCCTCAACTCCATCGTCTCCATGATCATTTTTTTCACCACGCT
CTTCTACTTGTTAAGCTCATCTAAAGACGAATACAAACTCTTAGAATGGT
TAACTCAAGTTAGCATGGGGACGAGGCTAGGTGAATCTATTAACAATGCT
GTACAAGAGGTCTTTGGAGCTTCATTGAAGATGGCATGTTTTTATGGTGT
TTACACGTGGATTACGCATAGTGTGTTTGGAGCAAATCTTGTCTTTATAC
CTTCAGGTAAATAATATacctaccgtaagttggtctaatgtcgcaCTTTT
TTCATCTAATTCCGTCACTCTTCTTAAGAGATAAGAATAATAAGAGTTTT
GgtatcactgattgaaaaaaggttttttcctCTCTAAGAtctaagcaaaa
aaatatagttttcaatcagcgattctgaCTTTCTCTAAAGACGGGTAACA
GAATGAGATTAGGGATGTTGACAtcagaccaacttacggtactgaATCTT
GTAGCAAACTGTATGAAAGAGAATTTAAGTTCTAGTTTTCAATCTTTGGT
TAACATGAATATATTAAAGGTCATTCTACTTTTATACACTCGTGACCTAA
TTTTATCTCTTATCACTAGACAGGTGTATATTACTATGAACTTCCTTAGT
TCTGTTGTATTAGTCCGAAGGTTTATTCTGGGGTTGGTGAATATCGGATA
TTTTCGAACCGGACTTCCAAAAACCGACCATTGGAGAGACTAAATTATGA
GGGGAAagttacccttagagagactaaatcGGCGAAATGTGAcccatttt
tcaacttttttgtttctCGTATCCTTAAGAGACCAAAAGAGCAGAAAACC
CCGTCCCTAGAGActatttcgattttttgttgGTTTTGTAAAACTTGGAA
GACTTCAAGAGACTTTttggaaagtaaaaaaaacgaCCTTTACCATCACC
ATCCGCACATACCAAGCACCTATTTTTACCCAGGTACCCGGATTTCTTCA
TTTCAGGTGTTTCTATAACATTGATCAATAAACAACTGTGATGGATGAAT
TGtctaaaactaaaaatatgACAATGTAATATCGTCCAAcgaaatttacc
atttttcacaTCTTTCAGCATTGGCTGCCTTGTTGGGAGTTGTACCCTTT
ATTGGGACCTATTGGGCTGCCATACCAGCTTGTCTTGAACTCTTGTTTAT
ACAAAATGATCAAATGAGAGCTGTGTCGCTTATCGTTGCTCATTTTGTAC
CTACTTATGTGGTGGATACAGCTATCTACAGTGAAATTGGTAAGTACAAT
TTGTACCATCCCCAGAGACTAACAAAGATAGGTTTTCAATTATTTCGTTG
GAGAGTGTTAACACTCTCGGCAATTCTATGGATAAGGGTTTCTCTGATAA
GACGATGACGGTGTTGACGAAGTTTCAATTGTCAAAATGGCAAACAAgtt
caaaattcttaaaaataaagttgTGACAAGGGATAGagttaatgaaaata
aaatttgaatttaaatgtctgaaatattgataacTTCGTGAAATTCTAAA
TGATTTTCAGTTTTTAGCTTTACTTTTCAATGTTTGATTTGCTCCTTATT
GTCTTCATAATTATTGCCAATATTATTCCCCATCTAGGCATCCATCCATA
CTTGACAGCTCTGGCAGTAGCTGGAGGTGTCATCTATCTTGGGTTAGAAG
GTGCATTTGTTGGTCCATTTGNTTATCCGTAACATCAAGCTCTGCACCAG
ACTTGTACAGTTCCACTGAAGACGTCGTCAAAACAGATACACCATCAGAA
CAACAGCAACCAGGACGGTTATCATTCGTCTggaaagtgtattcttattt
gAGTATATCCAAACTGACCAATATCTTTTGGCAAAACATGCATACAATGA
ATTCGGTAtctactttaaattttttttgtcatgttTATCGTGTATTGCAA
TAAGTCACTATTATGTCTGTGGGATGTTAAATAGTACACACAATTTGAGA
AGAGTTTCGCTGGAACTTAGTGGGAAGGGTGCATTCTTTCGAGAAATTGT
AATGTCTACTTTATCCGTTTATTTCGTCTTTCCCAtcctattttttcttt
ttctttagaatTTTCTAAAGATTGAAATATCTTATGTGTGAGTTCATCTA
TATATTTTTGCAGAAATCTATAAAAATCATCATTCTCCATTTATCATGCT
CATTCTTTACACACGCAGGTAATGGATTCCATATTTGTCATAGTGAAAGG
GAACGCCAGTCTGGTCATCAACATCATTGGACACGTCTTGTACGTCATCT
TCTCCAGCAGTACTTATGTCCTCAACTCCATCGTCTCCATGATCATTTTT
TTCACCACGCTCTTCTATTTGTTAAGCTCATCTAAAGACGAATACAAACT
CTTAGAATGGTTAACTCAAGTTAGCATGGGAACGAGGCTAGGTGAATCTA
TTAACAATGCTGTACAAGAGGTCTTTGGAGCTTCATTGAAGATGGCATGT
TTTTATGGTGTTTACACGTGGATTACACATAGTGTGTTTGGAGCAAATCT
TGTCTTTATACCTTCAGGTAAATAATATacctaccgtaagttggtctaat
gtcgcaCTTTTTTCATCTAATTCCGTCACCATTCTTTAGAGGTAAGAAGG
TTGGAATCActgattaaaaaaagttttttctctttGAGAGGTAGGCAAAG
AAATATAGTTTTCAATCAGCGAATCTGACTGTTTTATTATCCCGATCTCT
TAAAGACGGGTAACGGAATTAGATGAGGAGTGTTGATATCAGACCAACTT
GCGCTAACCGAACCTTGCAATAAAGCTATGTGAAAGGGAATTTGATTTTA
GTTTTCAATATCTGGTAACACTCATGAATCTATTAAAGGTCATTTTACTT
TTGCACGTCTGAATCTTATCTCCTATCAACCTATGAATTCCATTCTTTCT
GTGAAATACGAAGATTTTTCCCGGGGGAGAATATCGGTTATTTGCGGACC
GGActtccgaaaaccgacccttagagagactaaattATGAGGGGAAAGTT
ACAGGAACTAAATCGGCGAAATGTGacccatttttggacctacctccggg
tgccccggtggaggtcctataaattaacccatgtccgttNNNNNNNNNNN
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atttttccattctgaatttttgtacaattattgtcacttttttcttattt
tcatctgatgttaatcattaggtaggtccattcagcatgttgcttgttca
acttttttctttctcgTACCTTTAAGAGACCTTCGAGGCTATTTcgactt
tttgttgtttttgtaaccCTTGGAATTCTTGGGACATTTTTTGTGGAGAC
TTTGGAATGCAAAAAACGACatttaccgtccgcacatacaaAGCACTTAT
TTTTTCCCATGCTCCTCCCCTCCCGGATTTCTTCCCTTCAGATGTTTCCA
ATAAACAACTATGATAGATGAATTACCCCAACCTTAAACATAATACCATC
CACCGAAATTTAACACTTTTCACATCTTTCAGCATTGGCTGCCTTGTTGG
GAGTTGTACCCTTTATTGGGACCTATTGGGCTGCCATACCAGCTTGTCTC
GAACTCTTGTTTATACAAAATGATCAAATGAGAGCTGTGTCGCTTATCGT
TGCTCATTTTGTACCTACTTATGTGGTAGATACAGCTATCTACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001414XLOC_001414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002607-exon-sc0000021-1491911889:195379..195645TCONS_00002607-exon-sc0000021-1491911889:195379..195645Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1510915933:195379..195645TCONS_00002607-exon-sc0000021-1510915933:195379..195645Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1575043694:195379..195645TCONS_00002607-exon-sc0000021-1575043694:195379..195645Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1491911889:197957..197995TCONS_00002607-exon-sc0000021-1491911889:197957..197995Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1510915933:197957..197995TCONS_00002607-exon-sc0000021-1510915933:197957..197995Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1575043694:197957..197995TCONS_00002607-exon-sc0000021-1575043694:197957..197995Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1491911889:200911..201074TCONS_00002607-exon-sc0000021-1491911889:200911..201074Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1510915933:200911..201074TCONS_00002607-exon-sc0000021-1510915933:200911..201074Clytia hemisphaericaexon
TCONS_00002607-exon-sc0000021-1575043694:200911..201074TCONS_00002607-exon-sc0000021-1575043694:200911..201074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:195379..201074 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79195	3.72788	8.9088	7.74101	1.78277	0.524256	4.30704e-08	1.30469	0	1.41939	0	1.04293	0	0	1.31691	0	0.979694	0	0	0.460572	2.6971	2.20154	1.15634	1.31557	1.88935	0	0.913814	0	0.5435	0
Blast
[Close]
BLAST of TCONS_00002607 vs. Swiss-Prot (Human)
Match: TM245 (Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.612e-47
Identity = 84/151 (55.63%), Postives = 112/151 (74.17%), Query Frame = 3 
Query:   39 FSSSTYVLNSIVSMIIFFTTLFYLLSSSKDEYKLLEW------LTQVSMGTRL-GESINNAVQEVFGASLKMACFYGVYTWITHSVFGANLVFIPSALAALLGVVPFIGTYWAAIPACLELLFIQNDQMRAVSLIVAHFVPTYVVDTAIYS 470
            F S T +LN ++S+IIF TTLFYLLSSS + YK ++W      L+Q    + + G+S+  A++ VF ASLKMA FYG+YTW+TH++FG N+VFIPSALAA+LG VPF+GTYWAA+PA L+L   Q    +A+ L++ H +PTY VDTAIYS
Sbjct:  646 FYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYS 796
The following BLAST results are available for this feature:
BLAST of TCONS_00002607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2454.612e-4755.63Transmembrane protein 245 OS=Homo sapiens GN=TMEM2... [more]
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