|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002606 ID=TCONS_00002606|Name=TCONS_00002606|organism=Clytia hemisphaerica|type=transcript|length=5418bpRun BLAST on NCBI transcript from alignment at sc0000021:178577..206083+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002606 ID=TCONS_00002606|Name=TCONS_00002606|organism=Clytia hemisphaerica|type=transcript|length=27507bp|location=Sequence derived from alignment at sc0000021:178577..206083+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002606 vs. Swiss-Prot (Human)
Match: TM245 (Transmembrane protein 245 OS=Homo sapiens GN=TMEM245 PE=1 SV=2) HSP 1 Score: 275.018 bits (702), Expect = 5.416e-76 Identity = 184/563 (32.68%), Postives = 305/563 (54.17%), Query Frame = 2
Query: 1364 RIKRSSDPYFIALFWLFAISLIVRHQFILYVIVAPLLVFIALRWIINRYEILDLMLCKLIDVIHVVRNFYEDRKYIIFPKPVRSIGIFC--------HGLDQQLMSMICQWTDLFMTALIIVCMAFAVVLLTTLFAVQVHHESTFLLTVGANVVNKTIAANQDWLD----------SYNLNEEQVRQYMDHWMEEGYHMARKRVKGAFSSFIETNDTTTTDHLEAELTVFMDKLYEEWLNLNPKALSVTSSS---APDLYSSTEDVVKTDTPSEQQQPGRLSFVWKVYSYLSISKLTNIFWQNMHTMNSVMDSIFVIVKGNASLVINIIGHVLYVIFSSSTYVLNSIVSMIIFFTTLFYLLSSSKDEYKLLEWLTQVSMGTR-------LGESINNAVQEVFGASLKMACFYGVYTWITHSVFGANLVFIPSALAALLGVVPFIGTYWAAIPACLELLFIQNDQMRAVSLIVAHFVPTYVVDTAIYSEI--GIHPYLTALAVAGGVIYLGLEGAFVGPFVLSCLIAAVDVYNRIMTNSNNISPVDN----PKKNWR--RSVSE 2944
R K++SD YF++L W + I + +I+ ++ P+ V+I L+ ++ + ++D + + ++ +F ++R+ + P P+ +G F H L+++++ + + D ++ II + +LL L +VH ES ++ V +N++N+T+A + +W + + N V QY W+ H I + T +E ++ D+LY W N VT S L+ S ++ D L + + +N+ T S+++S+++++ N SL+ + +L ++F S T +LN ++S+IIF TTLFYLLSSS + YK ++W+ ++ ++ +G+S+ A++ VF ASLKMA FYG+YTW+TH++FG N+VFIPSALAA+LG VPF+GTYWAA+PA L+L Q +A+ L++ H +PTY VDTAIYS+I G HPYLT LAVAGG YLGLEGA +GP +L L+ A ++Y+ ++ + N P N P + R R +SE
Sbjct: 347 RKKKTSDIYFVSLVWAIVVMQIWLNLWIVQLLPVPIAVWI-LKKLVIHFGVVDFLEKRYHVWWGIIESFLKERQGALAPWPIVGLGKFLLKVDSKLWHWLNKKMIIWLEKMLDKIISIFIIFLLVIGTLLLALLLTAKVHQESVHMIEVTSNLINETLANHPEWANWLPEAQVVQRALNSAANNVYQYGREWITHKLHK------------ILGDKVNNTAVIEKQVLELWDRLYHSWFVKN-----VTHSGRHKGQKLHVSRQNSWLGDI-------------------LDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGGHPYLTGLAVAGGAYYLGLEGAIIGPILLCILVVASNIYSAMLVSPTNSVPTPNQTPWPAQPQRTFRDISE 872 HSP 2 Score: 88.9669 bits (219), Expect = 1.503e-17 Identity = 66/222 (29.73%), Postives = 106/222 (47.75%), Query Frame = 2
Query: 230 QHDKALKSAFYNTASFVFAIISGIILLNTYFVLHPFLRPLIWASLAGAFIFPFKRNATKIVHEWLLDLQVDKTPSIVGMMVLPAKVVSNAANTLG--WVIKSYQRLLFIVFTAYVLFNLWLHTYFFAWAFQIFSSCHMFLSTLLALFSQKLIILAFVLGYIVLLFNYKKRDNQTFMTVISMSVWSVLALHLATYAGSLQIPISLLFLAIMGRA-LYLSHYGK 886
+ DK +K AFYNT + +F + + YF+L FLRPL+WA L G F+ PFK + T++ WL L TP ++ ++LP V LG + + LL + L +Y + ++ + L FS L I V+GY++ + + ++ +S+ VW +L HLA+ AGS +IP+ L+ + +M LY GK
Sbjct: 45 RFDKPIKQAFYNTGAVLFVCLCCGAAVLVYFILEAFLRPLLWAVLCGTFLHPFKSSLTRLGRHWLQRLHRAHTPIVLAALLLPLCFVDYGVEALGEQALRRRRLLLLLGAGGPLLYGLYCLGSYLGVQVLLVHAAT--LICRGLDYFSS-LWIWTLVVGYVLTVSFKWNASTERYLRAVSIPVWIILLFHLASLAGSWRIPVFLVIVFLMSVGTLYEKQNGK 263 The following BLAST results are available for this feature:
BLAST of TCONS_00002606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.