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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002594 ID=TCONS_00002594|Name=TCONS_00002594|organism=Clytia hemisphaerica|type=transcript|length=3493bpRun BLAST on NCBI transcript from alignment at sc0000021:28252..42866+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002594 ID=TCONS_00002594|Name=TCONS_00002594|organism=Clytia hemisphaerica|type=transcript|length=14615bp|location=Sequence derived from alignment at sc0000021:28252..42866+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002594 vs. Swiss-Prot (Human)
Match: DDX42 (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1) HSP 1 Score: 671.389 bits (1731), Expect = 0.000e+0 Identity = 353/565 (62.48%), Postives = 424/565 (75.04%), Query Frame = 2
Query: 23 DDEEEMEYDSDGNPIPPERSKIIVPLPPVDHDEMEYANFESNFYEEHDDIKKLTRSQVEELRKSLGLKVSGSAPACPSVSFVHFGFDSHLMSVIRRSEYSKPTPIQAQAVPVALSGRDIIGIAKTGSGKTAAFVWPMLVHCIAQSELKSGDGPIAMICAPTRELCQQINSEVKRFGKCYNLQTVACYGGGSKWEQTKALQQGCEIVVGTPGRLIDLIKGKATNLQRVTYLVFDEADRMFDMGFEPQVRSIANNIRPDRQSLLFSATMKKKVEWLCRDILTDPVRIVVGELGEANEDVVQAVEVMYKQEQKWSWLLQHIVEFTSGGSVLIFVTKKTNSEELAKNLKENGHQLGLIHGDFDQYERNDVLKRFKANAFSILVATDVAARGLDIPSIKTVINYDVAXXXXXXXXXXXXXXXXXXKGIAYTLVTPQDNHFTADLVRNLEGANQNVPPKLLELAMKNPWFRKIRSRRDR----KASNKEFKPRDRPGLGMD--DDSGNTVGSIAEEEELLVGNTSGKRPSRSLLTSYSMSASAFGSNRLENLKSAFKSGY-TRFAKASDSN 1696
++E+ +EYDSDGNPI P + KII PLPP+DH E++Y FE NFY EH++I LT Q+ +LR L L+VSG+AP P SF HFGFD LM IR+SEY++PTPIQ Q VPVALSGRD+IGIAKTGSGKTAAF+WPML+H + Q EL+ GDGPIA+I PTRELCQQI++E KRFGK YNL++VA YGGGS WEQ KALQ+G EIVV TPGRLID +K KATNLQRV+YLVFDEADRMFDMGFE QVRSIA+++RPDRQ+LLFSAT +KK+E L RDIL DP+R+V G++GEANEDV Q VE+++ KW+WL + +VEFTS GSVL+FVTKK N+EELA NLK+ GH LGL+HGD DQ ERN V+ FK +LVATDVAARGLDIPSIKTVINYDVARDI THTHRIGRTGRAG KG+AYTL+TP+D++F DLVRNLEGANQ+V +LL+LAM+N WFRK R + + R+RPGLG + D N V S E +Y S A G +RL +K+AF+S Y + F AS SN
Sbjct: 176 EEEDNLEYDSDGNPIAPTK-KIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYRERPGLGSENMDRGNNNVMSNYE--------------------AYKPSTGAMG-DRLTAMKAAFQSQYKSHFVAASLSN 718 The following BLAST results are available for this feature:
BLAST of TCONS_00002594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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