TCONS_00002590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002590
Unique NameTCONS_00002590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002590 ID=TCONS_00002590|Name=TCONS_00002590|organism=Clytia hemisphaerica|type=transcript|length=1180bp
tgaattaaaattgatgagtaaacaaacgatatcactcttatttaaaaaca
aaacctttaaatttcgTCAAATTGTCCGGGACCAGAATTTTTACCAATGA
GGTGCTTTGATATTGACAGGCAGAATTGTCAATATTCAATTATATCAAAA
TGACGACAACGAGATAATTCATTACTTTTAATCACAATTATCTATTTACA
AATTCAAGCGAACTTTAAAAAACTACATTCAAAATTCCCAGCGATACAAG
GAGAACTCAAGGTAAATCAAATCCTGTAATGTAAATTGGTGAATCCTGTG
AATCTAAAAAAATCATATCTATTCAATACGGCAAGAGGCTTATTATGTCA
AGAAAACTACCTTAGGTTTGATCCAATCACCTTTTTGTCTGGAAAGTATA
ACCACCCCTAAAATTAATTTCTCGCACTTGAAAATAATAAAGATTGCATT
CCATGAAGATATCCCCAAAGTAAACCTTTATTACTCCATGTTATAAAATC
CTGGCGTCCATTCATGTTATCAATTGAAATCACAATCATGCAAACAAATT
TGCATAACGAatttattacacccctgtctcacagccccgatggaACTTCT
TTCCCGCAGTGGAGATGAACATTTTTAAGAAATCTCAAAGGgcataaaaa
ttctattgtgcTCAGGTCTAAAAAATTCATTGGGGATAGTTTTGGATTGC
AATTTTccttccattgaatttcaaactAGGATGAAAACAATgtcaatttc
caagtggggctgaaaatGTAGGTTATATCTCACCGGGATGACACAGGGTG
TATTACATCACAACTTGAATAAGAATCCAAAAACATAATCTCAGGACTAA
CCAAGATCACTTTTTCATTTGTGTTGTTGTCGTTTGAATTTGGAATGCTT
ATCCATAGTTTGTggcaattcttttttcaattcttcttcAAGGATTCctt
taaaattcttataagcATCCACCTTGCTGTCAACCTCCTCCTTCTTTTCG
CGGACCTTTTGTAAACAATCCTTAGTGTATAGCCTTGGGTTACGTCCCTC
GTCaatgtatttaaaaatttctggtgGTACAAATATGTCTGAAAatgcat
ttttgtttttatcaatttcttgCATGTTAGATATCATATCATTGAGTTTT
GTATTAAGAGCTGGTTGAGCACCTGGTTGG
Run BLAST on NCBI

transcript from alignment at sc0000021:477..1656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002590 ID=TCONS_00002590|Name=TCONS_00002590|organism=Clytia hemisphaerica|type=transcript|length=1180bp|location=Sequence derived from alignment at sc0000021:477..1656+ (Clytia hemisphaerica)
tgaattaaaattgatgagtaaacaaacgatatcactcttatttaaaaaca
aaacctttaaatttcgTCAAATTGTCCGGGACCAGAATTTTTACCAATGA
GGTGCTTTGATATTGACAGGCAGAATTGTCAATATTCAATTATATCAAAA
TGACGACAACGAGATAATTCATTACTTTTAATCACAATTATCTATTTACA
AATTCAAGCGAACTTTAAAAAACTACATTCAAAATTCCCAGCGATACAAG
GAGAACTCAAGGTAAATCAAATCCTGTAATGTAAATTGGTGAATCCTGTG
AATCTAAAAAAATCATATCTATTCAATACGGCAAGAGGCTTATTATGTCA
AGAAAACTACCTTAGGTTTGATCCAATCACCTTTTTGTCTGGAAAGTATA
ACCACCCCTAAAATTAATTTCTCGCACTTGAAAATAATAAAGATTGCATT
CCATGAAGATATCCCCAAAGTAAACCTTTATTACTCCATGTTATAAAATC
CTGGCGTCCATTCATGTTATCAATTGAAATCACAATCATGCAAACAAATT
TGCATAACGAatttattacacccctgtctcacagccccgatggaACTTCT
TTCCCGCAGTGGAGATGAACATTTTTAAGAAATCTCAAAGGgcataaaaa
ttctattgtgcTCAGGTCTAAAAAATTCATTGGGGATAGTTTTGGATTGC
AATTTTccttccattgaatttcaaactAGGATGAAAACAATgtcaatttc
caagtggggctgaaaatGTAGGTTATATCTCACCGGGATGACACAGGGTG
TATTACATCACAACTTGAATAAGAATCCAAAAACATAATCTCAGGACTAA
CCAAGATCACTTTTTCATTTGTGTTGTTGTCGTTTGAATTTGGAATGCTT
ATCCATAGTTTGTggcaattcttttttcaattcttcttcAAGGATTCctt
taaaattcttataagcATCCACCTTGCTGTCAACCTCCTCCTTCTTTTCG
CGGACCTTTTGTAAACAATCCTTAGTGTATAGCCTTGGGTTACGTCCCTC
GTCaatgtatttaaaaatttctggtgGTACAAATATGTCTGAAAatgcat
ttttgtttttatcaatttcttgCATGTTAGATATCATATCATTGAGTTTT
GTATTAAGAGCTGGTTGAGCACCTGGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001409XLOC_001409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002590-exon-sc0000021-1491911889:477..1656TCONS_00002590-exon-sc0000021-1491911889:477..1656Clytia hemisphaericaexon
TCONS_00002590-exon-sc0000021-1510915933:477..1656TCONS_00002590-exon-sc0000021-1510915933:477..1656Clytia hemisphaericaexon
TCONS_00002590-exon-sc0000021-1575043694:477..1656TCONS_00002590-exon-sc0000021-1575043694:477..1656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:477..1656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.71154	2.40419	6.92013	10.7079	0	0	0	0.169867	0	0	0	0.321905	0	0	0.209262	0	0	0.0838	0	0	0.479918	0.47197	1.25529	1.79772	0	0.187304	0.297971	0	0.707051	1.13481
Blast
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BLAST of TCONS_00002590 vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.460e-23
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = -2 
Query:  871 QPGAQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGIXXXXXXXXLPQTMDKHSKFKRQQH 1179
            QP +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:   30 QPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00002590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED101.460e-2345.63Mediator of RNA polymerase II transcription subuni... [more]
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