TCONS_00002570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002570
Unique NameTCONS_00002570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002570 ID=TCONS_00002570|Name=TCONS_00002570|organism=Clytia hemisphaerica|type=transcript|length=557bp
CTCATTCCTTGAAGAACATGAACGGAAATTGAAGGTAAGGTTTTATTACA
GTTGATACTCTCTAactcgacgttctactattcgatgcgCTCCATTATTt
gatattaccgagtttatgtatatgtgtttttctgcgacagaGACGGcaag
gttctaatttgtctacGTCCTTACTTACTGAGGACGcccttttaccgtcc
tcgattctgcgggtcaaaactgcgggctTTTCCAAATCGCtccagtcact
ttaccgtcctcgaaaatgcaaatacataaactcgctattattgagagtca
ccgtcaacaagaaactcttataaacgaAGCTCATCTTCGATTCGATACGC
tcatatactcgattgaaatttAATATCTCTGGGTCGATATAGTCAAACTT
ATTTAGATCATAAATTGTAGTTCATGCATGAGATTTCAGTTCAGTTTATT
GTTTACAGATAGGTGCAGGCCAACGTTCGTTCGCACATTTCAACGAAGTA
AAATAGTTAGCCTCGTATAAGAGCAGCACAAGTAGTGATAGTTCGACTGC
TCAGGTA
Run BLAST on NCBI

transcript from alignment at sc0000020:642547..643103

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002570 ID=TCONS_00002570|Name=TCONS_00002570|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000020:642547..643103 (Clytia hemisphaerica)
TACCTGAGCAGTCGAACTATCACTACTTGTGCTGCTCTTATACGAGGCTA
ACTATTTTACTTCGTTGAAATGTGCGAACGAACGTTGGCCTGCACCTATC
TGTAAACAATAAACTGAACTGAAATCTCATGCATGAACTACAATTTATGA
TCTAAATAAGTTTGACTATATCGACCCAGAGATATTaaatttcaatcgag
tatatgaGCGTATCGAATCGAAGATGAGCTtcgtttataagagtttcttg
ttgacggtgactctcaataatagcgagtttatgtatttgcattttcgagg
acggtaaagtgactggaGCGATTTGGAAAagcccgcagttttgacccgca
gaatcgaggacggtaaaagggCGTCCTCAGTAAGTAAGGACgtagacaaa
ttagaaccttgCCGTCtctgtcgcagaaaaacacatatacataaactcgg
taatatcaAATAATGGAGcgcatcgaatagtagaacgtcgagtTAGAGAG
TATCAACTGTAATAAAACCTTACCTTCAATTTCCGTTCATGTTCTTCAAG
GAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001389XLOC_001389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002570-exon-sc0000020-1491911889:642547..643103TCONS_00002570-exon-sc0000020-1491911889:642547..643103Clytia hemisphaericaexon
TCONS_00002570-exon-sc0000020-1510915933:642547..643103TCONS_00002570-exon-sc0000020-1510915933:642547..643103Clytia hemisphaericaexon
TCONS_00002570-exon-sc0000020-1575043694:642547..643103TCONS_00002570-exon-sc0000020-1575043694:642547..643103Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:642547..643103 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.19883	0.346291	0.338791	0.412446	0.869121	0.393209	0.858941	1.03091	0.638475	0.826292	0.271586	1.01703	1.0562	0.0578892	0.434868	0.229595	0	0	0	0.0985687	0.28847	0.116891	0.212542	0.218913	1.26994	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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