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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002567 ID=TCONS_00002567|Name=TCONS_00002567|organism=Clytia hemisphaerica|type=transcript|length=1345bp
GCAGGTTTGATTACTGAAGAGTGATTCTTGAGGATAAAAAGCAAAGTAAA
AGAAGGATTTTACACAAACAATATATATCATTGATTAAATCAGAACAGTT
TGAAAAGCTAACTAACTTTTTGGAAAACTGACATTACATCAGTAATTATA
GCCTAACTTGGAgcaatttaaattggtttaaaaaaaggCAACAGCAGAAG
CAGCTTTGATTCGTCAGAGGTTTAAGTAATTGCAGAACAACCTAgtgctt
tgaaaaaataatgagaAGCCGCACGGTATGGTTCATATGCACCATAATAT
GTCACACTATTGCTCTTGGCTTGTTTATTACTGCGATCCTTGGTGACTCT
TGGGCGGTCATTACAATGAAGAACGGAGCGCACATTCTGAATAATGAAAA
AGTGGTCACTCTGAATGGTGAAGCTATTGGACATTATGGTTTATGGACCT
ACTGCACTAACAATACATCAATCTGCAGACGGCAAGATACTTTTTACGGA
GATAAAAATGGAGATTGGTTTAAAGCCTGTCAGATATCAGCTACCACTGC
TTGTATTTTTGCATTGACTGCTTTCCTGGCATCACTGGTGAATCCATGCT
GTCCAGATTGTGCTGGTGTCATTGCAACCTTGAATATGTTCCTTGGTTGG
ATTTGCATTACTGCAGCTGTGGCAATTTTCACAGCACAAGAAACAACAAA
TCTTGAATATGGTTTAATGGAGAAACGAAGCTGGGGTTGGACCTACATTG
TGGCATGGTGTAGCAGTGCAACTAGCCTGGTATCCAGTGTGATAGCCTGG
TTGTCATACTCTCCTAAAAATCAGGACCATGAGGTGGATGCCTTGTTCGG
TTGACAAAAATGGAGgactgaaaaatgaaattcagtCTAGATATCCTGGC
AAGCAATCCAATCTTACAAAATTCTTACATGGATAATTTGGACAAACAAA
TCATtattcaaatcaaataaatagaATCAAATTATAAGTTCTTACTAAAA
CATTATCATATGTATGGACGTAATGATCGTATCATAATAATGTTTGTATA
AGAAGATGAGAAGATAGGAATACTTAACGAATAAACATTCTGATTTTAAT
AGCAAGTCAAGTATTGATTGAACCCAAAACAAATCATGGAAGGAACATTA
TGGTAATAATAGTGCTAGCACCctgggcccggttgttcaaaagtcgaTTA
GATTAACTCCCGATTAGCGCTAATCGCGATTAGATTTCGATTAGTTAATC
CCGTCGATTAACTTCCGTTGTTCGAACGTCAGATTAACTAATCGTGGACA
TTTTGcctgtgttttcaaaaatcttaatcttgacgtcacttttcg Run BLAST on NCBI protein sequence of TCONS_00002567-protein >TCONS_00002567-protein ID=TCONS_00002567-protein|Name=TCONS_00002567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MRSRTVWFICTIICHTIALGLFITAILGDSWAVITMKNGAHILNNEKVVT
LNGEAIGHYGLWTYCTNNTSICRRQDTFYGDKNGDWFKACQISATTACIF
ALTAFLASLVNPCCPDCAGVIATLNMFLGWICITAAVAIFTAQETTNLEY
GLMEKRSWGWTYIVAWCSSATSLVSSVIAWLSYSPKNQDHEVDALFG Run BLAST on NCBI transcript from alignment at sc0000020:636989..638333 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002567 ID=TCONS_00002567|Name=TCONS_00002567|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000020:636989..638333 (Clytia hemisphaerica)
cgaaaagtgacgtcaagattaagatttttgaaaacacaggCAAAATGTCC
ACGATTAGTTAATCTGACGTTCGAACAACGGAAGTTAATCGACGGGATTA
ACTAATCGAAATCTAATCGCGATTAGCGCTAATCGGGAGTTAATCTAAtc
gacttttgaacaaccgggcccagGGTGCTAGCACTATTATTACCATAATG
TTCCTTCCATGATTTGTTTTGGGTTCAATCAATACTTGACTTGCTATTAA
AATCAGAATGTTTATTCGTTAAGTATTCCTATCTTCTCATCTTCTTATAC
AAACATTATTATGATACGATCATTACGTCCATACATATGATAATGTTTTA
GTAAGAACTTATAATTTGATtctatttatttgatttgaataATGATTTGT
TTGTCCAAATTATCCATGTAAGAATTTTGTAAGATTGGATTGCTTGCCAG
GATATCTAGactgaatttcatttttcagtcCTCCATTTTTGTCAACCGAA
CAAGGCATCCACCTCATGGTCCTGATTTTTAGGAGAGTATGACAACCAGG
CTATCACACTGGATACCAGGCTAGTTGCACTGCTACACCATGCCACAATG
TAGGTCCAACCCCAGCTTCGTTTCTCCATTAAACCATATTCAAGATTTGT
TGTTTCTTGTGCTGTGAAAATTGCCACAGCTGCAGTAATGCAAATCCAAC
CAAGGAACATATTCAAGGTTGCAATGACACCAGCACAATCTGGACAGCAT
GGATTCACCAGTGATGCCAGGAAAGCAGTCAATGCAAAAATACAAGCAGT
GGTAGCTGATATCTGACAGGCTTTAAACCAATCTCCATTTTTATCTCCGT
AAAAAGTATCTTGCCGTCTGCAGATTGATGTATTGTTAGTGCAGTAGGTC
CATAAACCATAATGTCCAATAGCTTCACCATTCAGAGTGACCACTTTTTC
ATTATTCAGAATGTGCGCTCCGTTCTTCATTGTAATGACCGCCCAAGAGT
CACCAAGGATCGCAGTAATAAACAAGCCAAGAGCAATAGTGTGACATATT
ATGGTGCATATGAACCATACCGTGCGGCTtctcattattttttcaaagca
cTAGGTTGTTCTGCAATTACTTAAACCTCTGACGAATCAAAGCTGCTTCT
GCTGTTGcctttttttaaaccaatttaaattgcTCCAAGTTAGGCTATAA
TTACTGATGTAATGTCAGTTTTCCAAAAAGTTAGTTAGCTTTTCAAACTG
TTCTGATTTAATCAATGATATATATTGTTTGTGTAAAATCCTTCTTTTAC
TTTGCTTTTTATCCTCAAGAATCACTCTTCAGTAATCAAACCTGC Coding sequence (CDS) from alignment at sc0000020:636989..638333 >TCONS_00002567 ID=TCONS_00002567|Name=TCONS_00002567|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000020:636989..638333 (Clytia hemisphaerica)
TCAACCGAACAAGGCATCCACCTCATGGTCCTGATTTTTAGGAGAGTATG
ACAACCAGGCTATCACACTGGATACCAGGCTAGTTGCACTGCTACACCAT
GCCACAATGTAGGTCCAACCCCAGCTTCGTTTCTCCATTAAACCATATTC
AAGATTTGTTGTTTCTTGTGCTGTGAAAATTGCCACAGCTGCAGTAATGC
AAATCCAACCAAGGAACATATTCAAGGTTGCAATGACACCAGCACAATCT
GGACAGCATGGATTCACCAGTGATGCCAGGAAAGCAGTCAATGCAAAAAT
ACAAGCAGTGGTAGCTGATATCTGACAGGCTTTAAACCAATCTCCATTTT
TATCTCCGTAAAAAGTATCTTGCCGTCTGCAGATTGATGTATTGTTAGTG
CAGTAGGTCCATAAACCATAATGTCCAATAGCTTCACCATTCAGAGTGAC
CACTTTTTCATTATTCAGAATGTGCGCTCCGTTCTTCATTGTAATGACCG
CCCAAGAGTCACCAAGGATCGCAGTAATAAACAAGCCAAGAGCAATAGTG
TGACATATTATGGTGCATATGAACCATACCGTGCGGCTtctcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002567-exon-sc0000020-1491911889:636989..638333 | TCONS_00002567-exon-sc0000020-1491911889:636989..638333 | Clytia hemisphaerica | exon |
| TCONS_00002567-exon-sc0000020-1510915933:636989..638333 | TCONS_00002567-exon-sc0000020-1510915933:636989..638333 | Clytia hemisphaerica | exon |
| TCONS_00002567-exon-sc0000020-1575043694:636989..638333 | TCONS_00002567-exon-sc0000020-1575043694:636989..638333 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:636989..638333 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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