TCONS_00002564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002564
Unique NameTCONS_00002564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2089

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002564 ID=TCONS_00002564|Name=TCONS_00002564|organism=Clytia hemisphaerica|type=transcript|length=2089bp
TTTCGTGAAATTGTTATTTGAAATCAGTAACGGGGGTAAACAATCGAAAA
TCAGATCAATCATGGCGGATTTGGAAAGACCTACTTCAGCCTTGGACAAC
TTAGCAAGGTTGAATCTTCTGGATATTGTCCTTGAAAGAACACGTAATTT
GAGTAAGAAATCCCTTATTCATTGTTTAGTATATGTAGGGAGATTAAACA
GTGAGCAGACAAACTCCCAGCAAGCAGTTGCTGACTTTCATGAAaggttt
ttcaaaagctttggTTCTCAATTTCAAGTTGAATCTATCACAGGACTACT
CCTACTGTACCCAGGACACTTTATGCATGTTGTGGAAGGACCCGAAggga
ttttgaaagaattgaTTTATGGTGTATGTGATAAGATGTCAGGAAATGTA
ATGAAAGATGTCAAGTTACTTGTCTACCGAAATGATGCCCCTGCAAGATT
ATTTCACCAATGGTCTTCTAGAGTGTTGAACTTGATATCTGTCAGAATGG
ACGAATCAAAAAATCAAGACTCCATAGAATCAAAAGTAACTGATGCCATT
AATCTTGTCATGAAGCTTGCAAAAGAGCTGTCAACAATACCTCGATCGCA
ATTGAAGTCAAATTTAGACCAGCTTGCTACCAAATATTCATCCCTTCTTT
TACCTCAAGACTTAATTGAAAATCTCATCAAGTCTAAAGAGCTCTCTTTA
CTTAACACTTACCAGTCAAAAAGCCTTCAACCAATGCAAATCACTTTGGA
TAATGAATTGGTTTGGCCGATggaaagtaatttttcattttaggctTGCT
CATACGAACATTTGggctataaataaaaacaattcacATTTATCACCTCT
TGTATAAAATTTGGAGCTATTTTGAATAGTCGTTTGGGAAAACCCAACAG
TCTTTTGGATAAGTAATTActgttggtctaatgttgacatccctcttcta
atttcaacacccttctttaggaATAATgggaatttttctttcctttgcaA
TCagagtgaaaaaaaacaaaaactttagtCTATTAGTGATCCCAACCTTC
CTaatattcctatctctaaaggagaatgtcgaaattagaagagggatgtc
aacacTAGACTAACTTAAGGTACTCCAGCAGAATGTCTCTAGGTAAAAAT
CTCATCAATTAGATGAAATtaccattaaaaaaaaattatgctaCGTAGTA
ATTAGTTACTCAATAGACCGTTATGGTCTCCGAATGGCTATTGAATCACT
GCCATGATAAAATCAAACTGAATGGTGCTCAATGATAAACCAGAGCcaag
taaaatttgaaaaaagtcattcaGTAAAAGTACACAATATAAAGCTTCGT
ACCTCTGCATTTGTATTCCTCTTGTATATTTGAACAAGTGTAGAAGCACA
AAACTTTAAGTTATGttcttttattgaaagaaaactattttcaaattata
aaccaCTTTTGATATAATCTAAAAGTTTGAATCATGGTCAGCGAGTTTGT
TTTAAAGCATCATGTCTGAAAAATCCATTCAGTGTTTCTAATGACTATTT
GTAGATTGATTATTGGAAAAGGAGAATAGAATGGTATCTAAAATGGCACC
AACTTTAGTCTCTAAGACTCCAGGTCTCTGctttaaaagaaaatcaaaac
caTTTTTTGCGTTTGTATCCTAATAATGCAGCTCAGATGAAATGTGTGCC
CAGCGAGTGGAAATCCAGTTTATAATAGGTAAACCCAAATCTCAAGTAAA
AGAGGAATAGTATAGCCAGGTATAGCCAATTAATGAATTTTTAGATACAG
ATGTACTTGTACTTGTACTTTAAAAGTAAATCCACCAAAGGGTCTTCAGA
AGAGGAtagatttattttgatattctgtacatttcataaatatatattaa
ttttattttttcatttttaattgtaCTTTAGAGATTgttcaagcaatttt
ttttattaatacaATGTAATGATTGATATTATGATTTGACAAATATTTCT
AAAGCCAATATTTCTAAGAGAAACCAGTTaatcattattcaaaagttatg
aaatatttataaaagtaaGAGGCTTGATGCTATTAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00002564-protein

>TCONS_00002564-protein ID=TCONS_00002564-protein|Name=TCONS_00002564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
FVKLLFEISNGGKQSKIRSIMADLERPTSALDNLARLNLLDIVLERTRNL
SKKSLIHCLVYVGRLNSEQTNSQQAVADFHERFFKSFGSQFQVESITGLL
LLYPGHFMHVVEGPEGILKELIYGVCDKMSGNVMKDVKLLVYRNDAPARL
FHQWSSRVLNLISVRMDESKNQDSIESKVTDAINLVMKLAKELSTIPRSQ
LKSNLDQLATKYSSLLLPQDLIENLIKSKELSLLNTYQSKSLQPMQITLD
NELVWPMESNFSF
Run BLAST on NCBI

transcript from alignment at sc0000020:473979..476067

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002564 ID=TCONS_00002564|Name=TCONS_00002564|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at sc0000020:473979..476067 (Clytia hemisphaerica)
GTTTTAATAGCATCAAGCCTCttacttttataaatatttcataacttttg
aataatgattAACTGGTTTCTCTTAGAAATATTGGCTTTAGAAATATTTG
TCAAATCATAATATCAATCATTACATtgtattaataaaaaaaattgcttg
aacAATCTCTAAAGtacaattaaaaatgaaaaaataaaattaatatatat
ttatgaaatgtacagaatatcaaaataaatctaTCCTCTTCTGAAGACCC
TTTGGTGGATTTACTTTTAAAGTACAAGTACAAGTACATCTGTATCTAAA
AATTCATTAATTGGCTATACCTGGCTATACTATTCCTCTTTTACTTGAGA
TTTGGGTTTACCTATTATAAACTGGATTTCCACTCGCTGGGCACACATTT
CATCTGAGCTGCATTATTAGGATACAAACGCAAAAAAtggttttgatttt
cttttaaagCAGAGACCTGGAGTCTTAGAGACTAAAGTTGGTGCCATTTT
AGATACCATTCTATTCTCCTTTTCCAATAATCAATCTACAAATAGTCATT
AGAAACACTGAATGGATTTTTCAGACATGATGCTTTAAAACAAACTCGCT
GACCATGATTCAAACTTTTAGATTATATCAAAAGtggtttataatttgaa
aatagttttctttcaataaaagaaCATAACTTAAAGTTTTGTGCTTCTAC
ACTTGTTCAAATATACAAGAGGAATACAAATGCAGAGGTACGAAGCTTTA
TATTGTGTACTTTTACtgaatgacttttttcaaattttacttgGCTCTGG
TTTATCATTGAGCACCATTCAGTTTGATTTTATCATGGCAGTGATTCAAT
AGCCATTCGGAGACCATAACGGTCTATTGAGTAACTAATTACTACGtagc
ataatttttttttaatggtaATTTCATCTAATTGATGAGATTTTTACCTA
GAGACATTCTGCTGGAGTACCTTAAGTTAGTCTAgtgttgacatccctct
tctaatttcgacattctcctttagagataggaatattAGGAAGGTTGGGA
TCACTAATAGactaaagtttttgttttttttcactctGATtgcaaaggaa
agaaaaattcccATTATtcctaaagaagggtgttgaaattagaagaggga
tgtcaacattagaccaacagTAATTACTTATCCAAAAGACTGTTGGGTTT
TCCCAAACGACTATTCAAAATAGCTCCAAATTTTATACAAGAGGTGATAA
ATgtgaattgtttttatttatagccCAAATGTTCGTATGAGCAagcctaa
aatgaaaaattactttccATCGGCCAAACCAATTCATTATCCAAAGTGAT
TTGCATTGGTTGAAGGCTTTTTGACTGGTAAGTGTTAAGTAAAGAGAGCT
CTTTAGACTTGATGAGATTTTCAATTAAGTCTTGAGGTAAAAGAAGGGAT
GAATATTTGGTAGCAAGCTGGTCTAAATTTGACTTCAATTGCGATCGAGG
TATTGTTGACAGCTCTTTTGCAAGCTTCATGACAAGATTAATGGCATCAG
TTACTTTTGATTCTATGGAGTCTTGATTTTTTGATTCGTCCATTCTGACA
GATATCAAGTTCAACACTCTAGAAGACCATTGGTGAAATAATCTTGCAGG
GGCATCATTTCGGTAGACAAGTAACTTGACATCTTTCATTACATTTCCTG
ACATCTTATCACATACACCATAAAtcaattctttcaaaatcccTTCGGGT
CCTTCCACAACATGCATAAAGTGTCCTGGGTACAGTAGGAGTAGTCCTGT
GATAGATTCAACTTGAAATTGAGAAccaaagcttttgaaaaacctTTCAT
GAAAGTCAGCAACTGCTTGCTGGGAGTTTGTCTGCTCACTGTTTAATCTC
CCTACATATACTAAACAATGAATAAGGGATTTCTTACTCAAATTACGTGT
TCTTTCAAGGACAATATCCAGAAGATTCAACCTTGCTAAGTTGTCCAAGG
CTGAAGTAGGTCTTTCCAAATCCGCCATGATTGATCTGATTTTCGATTGT
TTACCCCCGTTACTGATTTCAAATAACAATTTCACGAAA

Coding sequence (CDS) from alignment at sc0000020:473979..476067

>TCONS_00002564 ID=TCONS_00002564|Name=TCONS_00002564|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000020:473979..476067 (Clytia hemisphaerica)
ctaaaatgaaaaattactttccATCGGCCAAACCAATTCATTATCCAAAG
TGATTTGCATTGGTTGAAGGCTTTTTGACTGGTAAGTGTTAAGTAAAGAG
AGCTCTTTAGACTTGATGAGATTTTCAATTAAGTCTTGAGGTAAAAGAAG
GGATGAATATTTGGTAGCAAGCTGGTCTAAATTTGACTTCAATTGCGATC
GAGGTATTGTTGACAGCTCTTTTGCAAGCTTCATGACAAGATTAATGGCA
TCAGTTACTTTTGATTCTATGGAGTCTTGATTTTTTGATTCGTCCATTCT
GACAGATATCAAGTTCAACACTCTAGAAGACCATTGGTGAAATAATCTTG
CAGGGGCATCATTTCGGTAGACAAGTAACTTGACATCTTTCATTACATTT
CCTGACATCTTATCACATACACCATAAAtcaattctttcaaaatcccTTC
GGGTCCTTCCACAACATGCATAAAGTGTCCTGGGTACAGTAGGAGTAGTC
CTGTGATAGATTCAACTTGAAATTGAGAAccaaagcttttgaaaaacctT
TCATGAAAGTCAGCAACTGCTTGCTGGGAGTTTGTCTGCTCACTGTTTAA
TCTCCCTACATATACTAAACAATGAATAAGGGATTTCTTACTCAAATTAC
GTGTTCTTTCAAGGACAATATCCAGAAGATTCAACCTTGCTAAGTTGTCC
AAGGCTGAAGTAGGTCTTTCCAAATCCGCCATGATTGATCTGATTTTCGA
TTGTTTACCCCCGTTACTGATTTCAAATAACAATTTCACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001383XLOC_001383Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002564-proteinTCONS_00002564-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002564-exon-sc0000020-1491911889:473979..476067TCONS_00002564-exon-sc0000020-1491911889:473979..476067Clytia hemisphaericaexon
TCONS_00002564-exon-sc0000020-1510915933:473979..476067TCONS_00002564-exon-sc0000020-1510915933:473979..476067Clytia hemisphaericaexon
TCONS_00002564-exon-sc0000020-1575043694:473979..476067TCONS_00002564-exon-sc0000020-1575043694:473979..476067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:473979..476067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.11442	7.37934	4.01827	3.84992	46.8258	33.5635	22.4422	24.1067	13.8191	17.3733	10.2095	8.45831	2.1344	1.83908	2.52889	3.02527	4.22161	3.96401	3.00907	2.87588	4.85335	3.84463	7.29176	7.18007	16.5398	17.7072	8.79787	5.60598	4.31477	4.13999
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007024BLUF_domain
IPR001792Acylphosphatase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0009882blue light photoreceptor activity
GO:0071949FAD binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0009882 blue light photoreceptor activity
molecular_function GO:0071949 FAD binding
Blast
[Close]
BLAST of TCONS_00002564 vs. Swiss-Prot (Human)
Match: TEX47 (Testis-expressed protein 47 OS=Homo sapiens GN=TEX47 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.806e-22
Identity = 69/225 (30.67%), Postives = 115/225 (51.11%), Query Frame = 2 
Query:  134 ERTRNLSKKSLIHCLVYVGRLNSEQTNSQQA-VADFHERFFKSFGSQFQVESITGLLLLYPGHFMHVVEGPEGILKELIYGVCDKMSGNV-------MKDVKLLVYRNDAPARLFHQWSSRVLNLISVRMDESKNQDSIESKVTDAINLVMKLAKELSTIPRSQLKSNLDQLATKYSSLLLPQDLIENLIKSKELSLLNTYQSKSLQPMQITLDNELVWPMESNF 784
            E+ R   KK L+  +  V ++   Q N ++  VAD++E+ F+S       E++TGLLL+YP   +H++E     L    Y V     G+V       ++ +K++V  ++ P RLF QW   V+ +  + +D+     S++  +TD +    KL+  L    +   K   D L      LLLP+ +I+ L KS+E     T+ +   +P+ ITLD+E+VWP  S F
Sbjct:   36 EKQRLHLKKFLLDRMFLVAKI---QANVERKDVADYYEQMFQSVLKHHLGEAVTGLLLIYPTSILHILESSSDTL----YKVLLDYIGHVKDETVFFIQQMKIIVISHNIPMRLFMQWHVSVIKVPVMYLDDVTQSQSLKEVITDFLTQTHKLSLYLCQTMKVGTKGPGDNLHQVAPDLLLPEQIIKYLCKSEEFMDPATFINMYNRPIHITLDSEVVWPAPSRF 253
The following BLAST results are available for this feature:
BLAST of TCONS_00002564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TEX471.806e-2230.67Testis-expressed protein 47 OS=Homo sapiens GN=TEX... [more]
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