TCONS_00002561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002561
Unique NameTCONS_00002561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002561 ID=TCONS_00002561|Name=TCONS_00002561|organism=Clytia hemisphaerica|type=transcript|length=471bp
ATTAAAGACAAGAGAATTTCATTTTGTGCAGTTTATTTTCTTGATTGTGC
ATTCCCATTCGCTAAAAGTTCCTACAAAGtctctgagacaggggtgaaaa
AATTAGGAGATTACACTAAAGAAATGATAAAAGATTTGAACAACCTAGAA
CGAATTGTCATAGCAACGTCCATTGAAAGTCCAAATAACGTCTTCTAAAG
TCagttgataaaaaatatttagtcccctgtaaaaaaatgtttgatagcAG
TAAAAAATTTACCAATACGTTCGGTCATTCTGGCGAAAAATCCTTTACGA
ATTTCAGggtcatcttcatttttcacaattttttgtcGAATAACATCTCT
CACTTTTGGATCGTTATAAAAATCCTCATTAATATCTCCGTCAGCACCAT
CAGGATTCATTTTATCCTCAGCAGGAATATCTACGATATGATCGTAGATG
ATTGTCTTTTTACCAGGATTT
Run BLAST on NCBI

transcript from alignment at sc0000020:382432..382902

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002561 ID=TCONS_00002561|Name=TCONS_00002561|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000020:382432..382902 (Clytia hemisphaerica)
AAATCCTGGTAAAAAGACAATCATCTACGATCATATCGTAGATATTCCTG
CTGAGGATAAAATGAATCCTGATGGTGCTGACGGAGATATTAATGAGGAT
TTTTATAACGATCCAAAAGTGAGAGATGTTATTCgacaaaaaattgtgaa
aaatgaagatgaccCTGAAATTCGTAAAGGATTTTTCGCCAGAATGACCG
AACGTATTGGTAAATTTTTTACTgctatcaaacatttttttacaggggac
taaatattttttatcaactGACTTTAGAAGACGTTATTTGGACTTTCAAT
GGACGTTGCTATGACAATTCGTTCTAGGTTGTTCAAATCTTTTATCATTT
CTTTAGTGTAATCTCCTAATTttttcacccctgtctcagagaCTTTGTAG
GAACTTTTAGCGAATGGGAATGCACAATCAAGAAAATAAACTGCACAAAA
TGAAATTCTCTTGTCTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001380XLOC_001380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002561-exon-sc0000020-1491911889:382432..382902TCONS_00002561-exon-sc0000020-1491911889:382432..382902Clytia hemisphaericaexon
TCONS_00002561-exon-sc0000020-1510915933:382432..382902TCONS_00002561-exon-sc0000020-1510915933:382432..382902Clytia hemisphaericaexon
TCONS_00002561-exon-sc0000020-1575043694:382432..382902TCONS_00002561-exon-sc0000020-1575043694:382432..382902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:382432..382902 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.325967	0.114108	0.565367	0	0.360733	1.89121	1.96404	0.999583	1.07271	0.508263	0.104191	0.863671	0.150628	1.44016	0.957897	1.08682	1.12923	4.21617	0.778516	0.185676	0.396316	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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