TCONS_00002555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002555
Unique NameTCONS_00002555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002555 ID=TCONS_00002555|Name=TCONS_00002555|organism=Clytia hemisphaerica|type=transcript|length=428bp
ggtagatataagtttggcatgaCATTATGGCTAACCCTCGAATaataagt
tttggggaaaatttgtcccAACCGAAGGTGCCCCCAAAACGTATGGTTGC
AGACATATTTACATAATAACATAAAACTCCTAAAAGATAAATAAGAAGAC
aatgacaaataatttttttttttttataatatagaCGTGAATCAAGAAGA
CATTCTTTCATCATAATTCATGACTGTTTAACTAGGCCCGTGTCCCTCCC
TCTTCAGGGAAAACGATTGATGTAAACTTGCCTTTTGCCATGAAACTAAT
ACCCTTTAACATGGAGGAGGCTTGGATACCTGCAAGGGGAAACACCCATC
ATGGAGGTCCCAGACACTGTGAGAAAGATGTCACGTATAGCGCCCTAACC
CCAGTGTCCCCGCCCAACCACGGACCCN
Run BLAST on NCBI

transcript from alignment at sc0000020:247411..247838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002555 ID=TCONS_00002555|Name=TCONS_00002555|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0000020:247411..247838 (Clytia hemisphaerica)
NGGGTCCGTGGTTGGGCGGGGACACTGGGGTTAGGGCGCTATACGTGACA
TCTTTCTCACAGTGTCTGGGACCTCCATGATGGGTGTTTCCCCTTGCAGG
TATCCAAGCCTCCTCCATGTTAAAGGGTATTAGTTTCATGGCAAAAGGCA
AGTTTACATCAATCGTTTTCCCTGAAGAGGGAGGGACACGGGCCTAGTTA
AACAGTCATGAATTATGATGAAAGAATGTCTTCTTGATTCACGtctatat
tataaaaaaaaaaaaattatttgtcattGTCTTCTTATTTATCTTTTAGG
AGTTTTATGTTATTATGTAAATATGTCTGCAACCATACGTTTTGGGGGCA
CCTTCGGTTgggacaaattttccccaaaacttattATTCGAGGGTTAGCC
ATAATGtcatgccaaacttatatctacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001374XLOC_001374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002555-exon-sc0000020-1491911889:247411..247838TCONS_00002555-exon-sc0000020-1491911889:247411..247838Clytia hemisphaericaexon
TCONS_00002555-exon-sc0000020-1510915933:247411..247838TCONS_00002555-exon-sc0000020-1510915933:247411..247838Clytia hemisphaericaexon
TCONS_00002555-exon-sc0000020-1575043694:247411..247838TCONS_00002555-exon-sc0000020-1575043694:247411..247838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:247411..247838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.83245	0.179451	0	0	0	0.209459	0.941153	0.389189	1.01679	0.130989	1.00058	0.954368	0.536345	0.536805	1.21748	0.779964	0	0.369287	2.03138	1.67216	2.51692	0	0.371468	1.00431	1.36726	0.786545	0.198756	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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