TCONS_00002554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002554
Unique NameTCONS_00002554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002554 ID=TCONS_00002554|Name=TCONS_00002554|organism=Clytia hemisphaerica|type=transcript|length=571bp
GtataatagaaaataaaatattattttataaacTATTTAGATATCATACC
TAAATATATCGAAAACGATATGAAATACTTAATATGCATTTTAACTTGCC
TCTGGTCTGCAACATGAGCCGCCCATAACTTTACAGCCTTGTTAACAGGC
TATGTAAACCATCTAATCAATGCCGATTGTTTCTTATGTACTGATCACAA
TCCTTCTTTATGCCTCTATATCTAAAACCGGATCATTCTCAACTCGCCGC
TCACTGTAACTGGGATACATAGCCTTCTCCAAATCAACCTTTGTCAGTCG
ACTGACAGAGAACTTCCGTATATAGTTGTGTAATACAATATCTAAATTAA
TATAAATGCTGTAGAAGCCGATTCTAATTTGACGTGCACTGTCTGTGTAC
AACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACtgtact
gtaaaaatttttcaattaaccGGGTCGCAGATTTTTGGTAACgtgaaata
aaattaaatattcaggTTTCTGTGTTTGATTATTACATCCAGTTGAGGAT
Aagtttatgcttataaaaagt
Run BLAST on NCBI

transcript from alignment at sc0000020:245677..246247

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002554 ID=TCONS_00002554|Name=TCONS_00002554|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000020:245677..246247 (Clytia hemisphaerica)
actttttataagcataaactTATCCTCAACTGGATGTAATAATCAAACAC
AGAAAcctgaatatttaattttatttcacGTTACCAAAAATCTGCGACCC
ggttaattgaaaaatttttacagtacaGTGATCTTCTTGGCTTGAAGGCT
GGTGTCAACCTAGGCAAGGTTGTACACAGACAGTGCACGTCAAATTAGAA
TCGGCTTCTACAGCATTTATATTAATTTAGATATTGTATTACACAACTAT
ATACGGAAGTTCTCTGTCAGTCGACTGACAAAGGTTGATTTGGAGAAGGC
TATGTATCCCAGTTACAGTGAGCGGCGAGTTGAGAATGATCCGGTTTTAG
ATATAGAGGCATAAAGAAGGATTGTGATCAGTACATAAGAAACAATCGGC
ATTGATTAGATGGTTTACATAGCCTGTTAACAAGGCTGTAAAGTTATGGG
CGGCTCATGTTGCAGACCAGAGGCAAGTTAAAATGCATATTAAGTATTTC
ATATCGTTTTCGATATATTTAGGTATGATATCTAAATAgtttataaaata
atattttattttctattataC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001373XLOC_001373Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002554-exon-sc0000020-1491911889:245677..246247TCONS_00002554-exon-sc0000020-1491911889:245677..246247Clytia hemisphaericaexon
TCONS_00002554-exon-sc0000020-1510915933:245677..246247TCONS_00002554-exon-sc0000020-1510915933:245677..246247Clytia hemisphaericaexon
TCONS_00002554-exon-sc0000020-1575043694:245677..246247TCONS_00002554-exon-sc0000020-1575043694:245677..246247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:245677..246247 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.116792	0	0	0.16111	0.143059	0.584828	1.09756	1.23244	0.72181	1.32223	0.982997	1.06997	2.46485	1.21702	2.47693	0.577339	0.593403	1.14189	0.732213	0.337867	0.376234	0.347959	0	0.631718	0	0.356867	0.200035
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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