TCONS_00002549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002549
Unique NameTCONS_00002549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002549 ID=TCONS_00002549|Name=TCONS_00002549|organism=Clytia hemisphaerica|type=transcript|length=830bp
ACCCATCCTCCTTATGGGATAAGATCACTCCTTAGGGGATAAGATACGCT
CACCGTCCTCCATACGGTACACCGTCCTCCATACGGTTTAGGCTAAGTTT
GTTATCTCTTGATGCATCCCCAATGACTCGCCAAAACTCACAAATTTCTA
TTTTCGTTCATTTAATTTTGCAAGAATTTTCACTATTTCGACCAAACACA
TTTTGTCTCTATTCCTGTTTCCCACAGTTCTTTTATCACTCGTACTCTAG
TTTTACAGGACACTATTTCGACCACATttacataaaatattttgagttAT
GTTTCCTTCAGGGCATTTCGACCTCATCATCTAAAACATTTTTGAGTCAT
ACTGTATTTGCCTTCAGGACTACCTCTATTTACATTTTACCTTGACGTAG
GAATTAACCTTTatattcttttactttttctgAAAAGCTTGGAGCATTGA
TATTTCTAAATGTGGTAAGCTGACTGGTGGCAGATGGGCACGTGAGCGAA
GCGAGACAAAAATCTACTTGcagatttaaaaacaaaaaattaagtcaCAG
GGACAGTACacaatccaaatatggttaagaTAAGCCACCCAGGGGAGGac
tagagtcaaactttgaagattttgtATGCTGACtttgagatttctttttt
tatatttgatcgtgcttttaagccaccttcaacatccaaaggactcttag
tgcgttcagctacagcatcttaaccggcgtgcgacgccggtcACCGGCTA
GTCATTTATAATAGCATTTACTGTAATATTCTCTCCGTAACCAGGCAGTG
GTTGATGAATCTACTAACTAAATTTGCAAC
Run BLAST on NCBI

transcript from alignment at sc0000020:223404..224233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002549 ID=TCONS_00002549|Name=TCONS_00002549|organism=Clytia hemisphaerica|type=transcript|length=830bp|location=Sequence derived from alignment at sc0000020:223404..224233 (Clytia hemisphaerica)
GTTGCAAATTTAGTTAGTAGATTCATCAACCACTGCCTGGTTACGGAGAG
AATATTACAGTAAATGCTATTATAAATGACTAGCCGGTgaccggcgtcgc
acgccggttaagatgctgtagctgaacgcactaagagtcctttggatgtt
gaaggtggcttaaaagcacgatcaaatataaaaaaagaaatctcaaaGTC
AGCATacaaaatcttcaaagtttgactctagtCCTCCCCTGGGTGGCTTA
tcttaaccatatttggattgtGTACTGTCCCTGtgacttaattttttgtt
tttaaatctgCAAGTAGATTTTTGTCTCGCTTCGCTCACGTGCCCATCTG
CCACCAGTCAGCTTACCACATTTAGAAATATCAATGCTCCAAGCTTTTca
gaaaaagtaaaagaatatAAAGGTTAATTCCTACGTCAAGGTAAAATGTA
AATAGAGGTAGTCCTGAAGGCAAATACAGTATGACTCAAAAATGTTTTAG
ATGATGAGGTCGAAATGCCCTGAAGGAAACATaactcaaaatattttatg
taaATGTGGTCGAAATAGTGTCCTGTAAAACTAGAGTACGAGTGATAAAA
GAACTGTGGGAAACAGGAATAGAGACAAAATGTGTTTGGTCGAAATAGTG
AAAATTCTTGCAAAATTAAATGAACGAAAATAGAAATTTGTGAGTTTTGG
CGAGTCATTGGGGATGCATCAAGAGATAACAAACTTAGCCTAAACCGTAT
GGAGGACGGTGTACCGTATGGAGGACGGTGAGCGTATCTTATCCCCTAAG
GAGTGATCTTATCCCATAAGGAGGATGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001368XLOC_001368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002549-exon-sc0000020-1491911889:223404..224233TCONS_00002549-exon-sc0000020-1491911889:223404..224233Clytia hemisphaericaexon
TCONS_00002549-exon-sc0000020-1510915933:223404..224233TCONS_00002549-exon-sc0000020-1510915933:223404..224233Clytia hemisphaericaexon
TCONS_00002549-exon-sc0000020-1575043694:223404..224233TCONS_00002549-exon-sc0000020-1575043694:223404..224233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:223404..224233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45704	0.0557108	0.517484	0.94927	0.462258	0.243522	0.661047	0.412576	0.240712	0.596321	0.636684	0.760966	0.607926	0.55242	0.129761	0.348134	0.557535	0.175832	0.546574	0.19065	0.773312	0.484964	0.196512	0.0595528	0.429366	0.218971	1.41006	1.08684	0.253639	0.129209
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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