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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002543 ID=TCONS_00002543|Name=TCONS_00002543|organism=Clytia hemisphaerica|type=transcript|length=1947bp
GCCGTcccaaaaaaaactgaaaacgaAATATATTGTTATCTCGTTTGAGG
GTTCGAgactgattgaaaaaaaatacagtcagaaagctcaaattttcaaa
gcttgacgattttttatttttttttcagtttatcAAATGACACTTTTTCG
AATCCTTCGATATTTTTGAGCACCACGCCATTGCGACATATCTCGTCATC
AGTCTTTTAAGCACGGAAAGTGCGCTCGAGATATGTTGAAGGCCTGGGTA
ATGACTGAAAATCCGATTCAGCAGGCAACGAACTAGTCTCGCAAAGTTTC
AACTGATTATGTCAATTGTTTTGCCGATGAAAGTCGCCATTCTTACACGG
GACTTGTTTGTTTCTCGGGGGATTTAGTTTCATCAATGGATGACGAACGA
TCAGCCATGGTTGATTGTTTTGTCGGTACATCCCCGATAATTGCCAACGG
TGCCACCTGAATCTGCCGAACATTCGCATTCCGGGTACATTTCTGGTAAA
TATCGTTCATTAAAGTCCTGGTCCTCCTGTCCTTCGCTAAGAAAGCAATT
GCATTAAACATTCCGTTCAAGTTTGGAATAAAGAAAATGTAGAACGACAT
TGTACTGATCTGCCAATATTCCACATCTTTTAAAAGGCGTTTGACCAGAC
TATGATAGAGTAGAACGGGAAAATTACACAAGAAATAAAGACCGACGTAT
ATTGAAGCCATCTTAGTTAGCTTTCTAGTCTCCGTCACTATTAGGCTGTT
GTTTTGGATGATTCTTAGCTTATAGATGGAAACAAAATAANTCCGACATA
TATTGAAGCCATCTTAGTTAGCTTTCTAGTCTCGGTCACTATTAGGCTGT
TGTTTTGGATGATTCTTAGCTTATAgatggaaacaaaataaaacaccaAT
GTCAACGAATAAATGACGTAATTCAAAGGTGCTGTTAGGACGGCTGCCTG
GCCCGGACCTCCAAGTGCTCCAATGGCCCATAAAATAGTCTGTAACACTG
AAAATATAGTCGGGATCGCAAGCACCAGATTATATCTTCGTGAATTGAAT
TTAGTTGAATAATTCTGCTTCAGCAAAACACGCATTAGTCGATCAAAAGC
TATAATAGCGACCAAGTATCCAATATTCCAGACCAAGAATGCTGAAATTA
TCATTAGCCCTGCTTTGAAAGGACAGCTTAGATTTTCACTCTCTCTGATA
TACAAGCAGTAGGAGATGTTCCCTATAACGGCCGTTAAAACATCGTAAAC
TGACACAATAAGGATTAGCCGTGTTGACTGATTGGCCGATTGCTTGGTCT
TTAAAATAGCCCATACAACGATCGAATTAAGAACAAAATTGAGTGTCCCA
ATGATGATATAAGGAATCGTTAGTTCTCTACGGACTTTTGGCGGAGCATC
CTTAATATCGTCAAGAATGGAAATGCAAACAGGTATTGTCTGATTGTTGA
TTGACGTCCAATTATCCATATGCGTCCAATTATTGACTATTGTCACATTC
TGAACTAAGGAGAGTATTCCTGCCATTGTTGTTATGGGGATCTCCTAGGT
AATCACTCCTTCCCAatcttcaaaacaaagttcaacGTCCTTAAAGTGTT
CTATATTCTTAAGTTGACAATCCTGGAGCTTTTCATTGGTTGGCTATCTT
CCTCACGCCGTTCGATACTTGCTTTGACCAAGCTAAACAAATCTCACTCT
ATCTATTTGTATATATTTAGTAACATTTTCTATTTGTAAGAGTACAGGTT
TTTTGATTGGTTCGACTCCTTGTCGATGTATGATATTACTATTTTTAATA
CGACGCTGATGTATTTACTCTCACCAAGACTTACTCTATTCTCGTTATTG
GATGTTCTTTTACTTGCGTTTTTTCTTCTGGATTAACGTTTTTATTGCTA
AATAAAGTTCAGATTATCCAAATTCAATCAAGTCAACGACAGACAAG Run BLAST on NCBI protein sequence of TCONS_00002543-protein >TCONS_00002543-protein ID=TCONS_00002543-protein|Name=TCONS_00002543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
MAGILSLVQNVTIVNNWTHMDNWTSINNQTIPVCISILDDIKDAPPKVRR
ELTIPYIIIGTLNFVLNSIVVWAILKTKQSANQSTRLILIVSVYDVLTAV
IGNISYCLYIRESENLSCPFKAGLMIISAFLVWNIGYLVAIIAFDRLMRV
LLKQNYSTKFNSRRYNLVLAIPTIFSVLQTILWAIGALGGPGQAAVLTAP
LNYVIYSLTLVFYFVSIYKLRIIQNNSLIVTETRKLTKMASIYVGXILFP
SIS Run BLAST on NCBI transcript from alignment at sc0000020:88673..90619 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002543 ID=TCONS_00002543|Name=TCONS_00002543|organism=Clytia hemisphaerica|type=transcript|length=1947bp|location=Sequence derived from alignment at sc0000020:88673..90619 (Clytia hemisphaerica)
CTTGTCTGTCGTTGACTTGATTGAATTTGGATAATCTGAACTTTATTTAG
CAATAAAAACGTTAATCCAGAAGAAAAAACGCAAGTAAAAGAACATCCAA
TAACGAGAATAGAGTAAGTCTTGGTGAGAGTAAATACATCAGCGTCGTAT
TAAAAATAGTAATATCATACATCGACAAGGAGTCGAACCAATCAAAAAAC
CTGTACTCTTACAAATAGAAAATGTTACTAAATATATACAAATAGATAGA
GTGAGATTTGTTTAGCTTGGTCAAAGCAAGTATCGAACGGCGTGAGGAAG
ATAGCCAACCAATGAAAAGCTCCAGGATTGTCAACTTAAGAATATAGAAC
ACTTTAAGGACgttgaactttgttttgaagatTGGGAAGGAGTGATTACC
TAGGAGATCCCCATAACAACAATGGCAGGAATACTCTCCTTAGTTCAGAA
TGTGACAATAGTCAATAATTGGACGCATATGGATAATTGGACGTCAATCA
ACAATCAGACAATACCTGTTTGCATTTCCATTCTTGACGATATTAAGGAT
GCTCCGCCAAAAGTCCGTAGAGAACTAACGATTCCTTATATCATCATTGG
GACACTCAATTTTGTTCTTAATTCGATCGTTGTATGGGCTATTTTAAAGA
CCAAGCAATCGGCCAATCAGTCAACACGGCTAATCCTTATTGTGTCAGTT
TACGATGTTTTAACGGCCGTTATAGGGAACATCTCCTACTGCTTGTATAT
CAGAGAGAGTGAAAATCTAAGCTGTCCTTTCAAAGCAGGGCTAATGATAA
TTTCAGCATTCTTGGTCTGGAATATTGGATACTTGGTCGCTATTATAGCT
TTTGATCGACTAATGCGTGTTTTGCTGAAGCAGAATTATTCAACTAAATT
CAATTCACGAAGATATAATCTGGTGCTTGCGATCCCGACTATATTTTCAG
TGTTACAGACTATTTTATGGGCCATTGGAGCACTTGGAGGTCCGGGCCAG
GCAGCCGTCCTAACAGCACCTTTGAATTACGTCATTTATTCGTTGACATt
ggtgttttattttgtttccatcTATAAGCTAAGAATCATCCAAAACAACA
GCCTAATAGTGACCGAGACTAGAAAGCTAACTAAGATGGCTTCAATATAT
GTCGGANTTATTTTGTTTCCATCTATAAGCTAAGAATCATCCAAAACAAC
AGCCTAATAGTGACGGAGACTAGAAAGCTAACTAAGATGGCTTCAATATA
CGTCGGTCTTTATTTCTTGTGTAATTTTCCCGTTCTACTCTATCATAGTC
TGGTCAAACGCCTTTTAAAAGATGTGGAATATTGGCAGATCAGTACAATG
TCGTTCTACATTTTCTTTATTCCAAACTTGAACGGAATGTTTAATGCAAT
TGCTTTCTTAGCGAAGGACAGGAGGACCAGGACTTTAATGAACGATATTT
ACCAGAAATGTACCCGGAATGCGAATGTTCGGCAGATTCAGGTGGCACCG
TTGGCAATTATCGGGGATGTACCGACAAAACAATCAACCATGGCTGATCG
TTCGTCATCCATTGATGAAACTAAATCCCCCGAGAAACAAACAAGTCCCG
TGTAAGAATGGCGACTTTCATCGGCAAAACAATTGACATAATCAGTTGAA
ACTTTGCGAGACTAGTTCGTTGCCTGCTGAATCGGATTTTCAGTCATTAC
CCAGGCCTTCAACATATCTCGAGCGCACTTTCCGTGCTTAAAAGACTGAT
GACGAGATATGTCGCAATGGCGTGGTGCTCAAAAATATCGAAGGATTCGA
AAAAGTGTCATTTgataaactgaaaaaaaaataaaaaatcgtcaagcttt
gaaaatttgagctttctgactgtattttttttcaatcagtcTCGAACCCT
CAAACGAGATAACAATATATTtcgttttcagttttttttgggACGGC Coding sequence (CDS) from alignment at sc0000020:88673..90619 >TCONS_00002543 ID=TCONS_00002543|Name=TCONS_00002543|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000020:88673..90619 (Clytia hemisphaerica)
ATGGCAGGAATACTCTCCTTAGTTCAGAATGTGACAATAGTCAATAATTG
GACGCATATGGATAATTGGACGTCAATCAACAATCAGACAATACCTGTTT
GCATTTCCATTCTTGACGATATTAAGGATGCTCCGCCAAAAGTCCGTAGA
GAACTAACGATTCCTTATATCATCATTGGGACACTCAATTTTGTTCTTAA
TTCGATCGTTGTATGGGCTATTTTAAAGACCAAGCAATCGGCCAATCAGT
CAACACGGCTAATCCTTATTGTGTCAGTTTACGATGTTTTAACGGCCGTT
ATAGGGAACATCTCCTACTGCTTGTATATCAGAGAGAGTGAAAATCTAAG
CTGTCCTTTCAAAGCAGGGCTAATGATAATTTCAGCATTCTTGGTCTGGA
ATATTGGATACTTGGTCGCTATTATAGCTTTTGATCGACTAATGCGTGTT
TTGCTGAAGCAGAATTATTCAACTAAATTCAATTCACGAAGATATAATCT
GGTGCTTGCGATCCCGACTATATTTTCAGTGTTACAGACTATTTTATGGG
CCATTGGAGCACTTGGAGGTCCGGGCCAGGCAGCCGTCCTAACAGCACCT
TTGAATTACGTCATTTATTCGTTGACATtggtgttttattttgtttccat
cTATAAGCTAAGAATCATCCAAAACAACAGCCTAATAGTGACCGAGACTA
GAAAGCTAACTAAGATGGCTTCAATATATGTCGGANTTATTTTGTTTCCA
TCTATAAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002543-exon-sc0000020-1491911889:88673..90619 | TCONS_00002543-exon-sc0000020-1491911889:88673..90619 | Clytia hemisphaerica | exon |
| TCONS_00002543-exon-sc0000020-1510915933:88673..90619 | TCONS_00002543-exon-sc0000020-1510915933:88673..90619 | Clytia hemisphaerica | exon |
| TCONS_00002543-exon-sc0000020-1575043694:88673..90619 | TCONS_00002543-exon-sc0000020-1575043694:88673..90619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:88673..90619 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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