TCONS_00002536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002536
Unique NameTCONS_00002536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002536 ID=TCONS_00002536|Name=TCONS_00002536|organism=Clytia hemisphaerica|type=transcript|length=640bp
TCCAAATCTCATATCACTTGTTTGAAACGATAACCTAATATCCTCATTga
actttattattttttaatttagaaaaaagcgaaaattatCTTCGTTTTAT
AAACGGGGACCTATTGGATAATTGCCCAGGATCCAGCAGATTGGATCGTA
CCAAATGATGCAACATGCAACAGATAAAGTCTAATAATTCATTATCTCCC
GAATGGTGCATGGTGATTATATCCAACCATTATGGGAAATATTCACTACT
TAAGGACGAAGTTGAATCCAATCAAGGAGGAGAGCTGTTATCATTTTCGA
GCATACTAACTATATGGTGACGACAGTGGAAATGTAAGTATGTTGATTTT
CAACTAATCGACTTCCTGAATTTCGAGCACGTTAATAACATGGCGATAAT
ATGGACATGATGTTCCACAATGTCCCAGATAATGACGATATCGTTCTGGA
TTGTGGGAATGTAAATATGCTGATTTTCAACGAATCATTCCTGAATTTCG
TGCACGTTAAAAACATGATGTTCCACAATATCCCAGATAAAGATCGCGAT
TCTATTATCATTAAACACGTGGTGCTTGTTTGTTTAAAAGCTGATTGTAT
GAGGATTGGTACAGATTAATCATGATGATCAACAGTGGat
Run BLAST on NCBI

transcript from alignment at sc0000020:4493..5132

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002536 ID=TCONS_00002536|Name=TCONS_00002536|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0000020:4493..5132 (Clytia hemisphaerica)
atCCACTGTTGATCATCATGATTAATCTGTACCAATCCTCATACAATCAG
CTTTTAAACAAACAAGCACCACGTGTTTAATGATAATAGAATCGCGATCT
TTATCTGGGATATTGTGGAACATCATGTTTTTAACGTGCACGAAATTCAG
GAATGATTCGTTGAAAATCAGCATATTTACATTCCCACAATCCAGAACGA
TATCGTCATTATCTGGGACATTGTGGAACATCATGTCCATATTATCGCCA
TGTTATTAACGTGCTCGAAATTCAGGAAGTCGATTAGTTGAAAATCAACA
TACTTACATTTCCACTGTCGTCACCATATAGTTAGTATGCTCGAAAATGA
TAACAGCTCTCCTCCTTGATTGGATTCAACTTCGTCCTTAAGTAGTGAAT
ATTTCCCATAATGGTTGGATATAATCACCATGCACCATTCGGGAGATAAT
GAATTATTAGACTTTATCTGTTGCATGTTGCATCATTTGGTACGATCCAA
TCTGCTGGATCCTGGGCAATTATCCAATAGGTCCCCGTTTATAAAACGAA
GataattttcgcttttttctaaattaaaaaataataaagttcAATGAGGA
TATTAGGTTATCGTTTCAAACAAGTGATATGAGATTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001356XLOC_001356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002536-exon-sc0000020-1491911889:4493..5132TCONS_00002536-exon-sc0000020-1491911889:4493..5132Clytia hemisphaericaexon
TCONS_00002536-exon-sc0000020-1510915933:4493..5132TCONS_00002536-exon-sc0000020-1510915933:4493..5132Clytia hemisphaericaexon
TCONS_00002536-exon-sc0000020-1575043694:4493..5132TCONS_00002536-exon-sc0000020-1575043694:4493..5132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:4493..5132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.65852	0.96324	0.279604	0.364731	0.777044	0.701749	0.846631	1.38706	0.13873	0.34368	0.0833961	0.328928	0.10949	0.227413	0.327188	0.652085	0.803316	0.6967	0.175005	0.366261	1.03463	0.698753	0.377523	0.686446	0.265134	1.73525	0.22574	0	0.365453	0.279254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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