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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002535 ID=TCONS_00002535|Name=TCONS_00002535|organism=Clytia hemisphaerica|type=transcript|length=1150bp
GGTTGCAGTAACTtttatttgaacatttttaaggtCACCGcttgagaaaa
gagaaaaaggttCTCTTGTTTTTGGCAAGATGGGTCATCCAAGTAATATT
ATGTTTTGGTTTTTGGTTTTGGTTTGCTTCCAACAAATTTTGATAATCAT
TGGATCAGTGTTCGCCTTCCTGATTATTTTAACTTCAAAATCACTTCGGA
AGGTCTTCAATTATTGTGTATTGGCGCTACTTTTTGTATCTCATGTTTCT
GCAAGTATCTGCAAGATTGGACGTTCGCTGTCGAAATATCACGGACTTGA
CCAAAAAATCTTCGATAATCTTTCATCCATTTTTACGGCATTGGTCATAA
GTTTTTGTATCTTGTTTTCAGTCGATAAGTTTATAACTGTAAAATGGCCT
TTCTTAAGTAGCTCAATCAAGAAATGGTACAAGATAGTTGGATTAGTAAT
AGCTGTATTGACATCAATTATTTTTCCAgtggtaaaatatttctcgCAGA
TAGTATATATTGTGGCAGTTATTCTCACAAATACCGGGGGTGTACTAACC
GTCATCGGGAATATTTATCTTTACCAGTCGGTGAAACGACAATGTGAACG
AATAGCAACGACTATCGTCGTAACCGAAAATATACAACAACAAATACGAC
AACGTAAGGATACTCGAAAACGATCGTTGAAATCATTTAAAATGTGTCTG
TTGATTGCTGGCTCATATATTATAACGTTTTTCCCAGGAACAATGATTCT
ATATGTGTATGGAGTAactttaaaaagcaaaacgcaAATCAAGGACGACG
AAGAATTGTTATTCTGGCAACTGTTAATCATGTTTGTGATAACTTTGAAC
GGAATTTCAGACGTAATTATTTTCTTCACTTATAACTCGAAAGCTAAgag
gaaaattaaaaagattctTGGTTTTGTAAGATGTTCATATTCGAGAGTAC
ATCCCCTATGACATGAAACTCCGCAATAATCAAAATCTTCACAATATGAA
CGTTTATTACAGTGGGTGCATCTTGCAATTTCTGCATTATTAACATGAAA
GCGTAATTTGTCTTTCTTTTAAACcacacatgtagttaattcccgtaaTA
AACGAAGAGAAATGAATCGCTAGGGGTAATACAGttactttcggtcgggg Run BLAST on NCBI protein sequence of TCONS_00002535-protein >TCONS_00002535-protein ID=TCONS_00002535-protein|Name=TCONS_00002535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
MGHPSNIMFWFLVLVCFQQILIIIGSVFAFLIILTSKSLRKVFNYCVLAL
LFVSHVSASICKIGRSLSKYHGLDQKIFDNLSSIFTALVISFCILFSVDK
FITVKWPFLSSSIKKWYKIVGLVIAVLTSIIFPVVKYFSQIVYIVAVILT
NTGGVLTVIGNIYLYQSVKRQCERIATTIVVTENIQQQIRQRKDTRKRSL
KSFKMCLLIAGSYIITFFPGTMILYVYGVTLKSKTQIKDDEELLFWQLLI
MFVITLNGISDVIIFFTYNSKAKRKIKKILGFVRCSYSRVHPL Run BLAST on NCBI transcript from alignment at sc0000020:148..1297 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002535 ID=TCONS_00002535|Name=TCONS_00002535|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0000020:148..1297 (Clytia hemisphaerica)
ccccgaccgaaagtaaCTGTATTACCCCTAGCGATTCATTTCTCTTCGTT
TAttacgggaattaactacatgtgtgGTTTAAAAGAAAGACAAATTACGC
TTTCATGTTAATAATGCAGAAATTGCAAGATGCACCCACTGTAATAAACG
TTCATATTGTGAAGATTTTGATTATTGCGGAGTTTCATGTCATAGGGGAT
GTACTCTCGAATATGAACATCTTACAAAACCAagaatctttttaattttc
ctcTTAGCTTTCGAGTTATAAGTGAAGAAAATAATTACGTCTGAAATTCC
GTTCAAAGTTATCACAAACATGATTAACAGTTGCCAGAATAACAATTCTT
CGTCGTCCTTGATTtgcgttttgctttttaaagtTACTCCATACACATAT
AGAATCATTGTTCCTGGGAAAAACGTTATAATATATGAGCCAGCAATCAA
CAGACACATTTTAAATGATTTCAACGATCGTTTTCGAGTATCCTTACGTT
GTCGTATTTGTTGTTGTATATTTTCGGTTACGACGATAGTCGTTGCTATT
CGTTCACATTGTCGTTTCACCGACTGGTAAAGATAAATATTCCCGATGAC
GGTTAGTACACCCCCGGTATTTGTGAGAATAACTGCCACAATATATACTA
TCTGcgagaaatattttaccacTGGAAAAATAATTGATGTCAATACAGCT
ATTACTAATCCAACTATCTTGTACCATTTCTTGATTGAGCTACTTAAGAA
AGGCCATTTTACAGTTATAAACTTATCGACTGAAAACAAGATACAAAAAC
TTATGACCAATGCCGTAAAAATGGATGAAAGATTATCGAAGATTTTTTGG
TCAAGTCCGTGATATTTCGACAGCGAACGTCCAATCTTGCAGATACTTGC
AGAAACATGAGATACAAAAAGTAGCGCCAATACACAATAATTGAAGACCT
TCCGAAGTGATTTTGAAGTTAAAATAATCAGGAAGGCGAACACTGATCCA
ATGATTATCAAAATTTGTTGGAAGCAAACCAAAACCAAAAACCAAAACAT
AATATTACTTGGATGACCCATCTTGCCAAAAACAAGAGaacctttttctc
ttttctcaagCGGTGaccttaaaaatgttcaaataaaAGTTACTGCAACC
Coding sequence (CDS) from alignment at sc0000020:148..1297 >TCONS_00002535 ID=TCONS_00002535|Name=TCONS_00002535|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000020:148..1297 (Clytia hemisphaerica)
TCATAGGGGATGTACTCTCGAATATGAACATCTTACAAAACCAagaatct
ttttaattttcctcTTAGCTTTCGAGTTATAAGTGAAGAAAATAATTACG
TCTGAAATTCCGTTCAAAGTTATCACAAACATGATTAACAGTTGCCAGAA
TAACAATTCTTCGTCGTCCTTGATTtgcgttttgctttttaaagtTACTC
CATACACATATAGAATCATTGTTCCTGGGAAAAACGTTATAATATATGAG
CCAGCAATCAACAGACACATTTTAAATGATTTCAACGATCGTTTTCGAGT
ATCCTTACGTTGTCGTATTTGTTGTTGTATATTTTCGGTTACGACGATAG
TCGTTGCTATTCGTTCACATTGTCGTTTCACCGACTGGTAAAGATAAATA
TTCCCGATGACGGTTAGTACACCCCCGGTATTTGTGAGAATAACTGCCAC
AATATATACTATCTGcgagaaatattttaccacTGGAAAAATAATTGATG
TCAATACAGCTATTACTAATCCAACTATCTTGTACCATTTCTTGATTGAG
CTACTTAAGAAAGGCCATTTTACAGTTATAAACTTATCGACTGAAAACAA
GATACAAAAACTTATGACCAATGCCGTAAAAATGGATGAAAGATTATCGA
AGATTTTTTGGTCAAGTCCGTGATATTTCGACAGCGAACGTCCAATCTTG
CAGATACTTGCAGAAACATGAGATACAAAAAGTAGCGCCAATACACAATA
ATTGAAGACCTTCCGAAGTGATTTTGAAGTTAAAATAATCAGGAAGGCGA
ACACTGATCCAATGATTATCAAAATTTGTTGGAAGCAAACCAAAACCAAA
AACCAAAACATAATATTACTTGGATGACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002535-exon-sc0000020-1491911889:148..1297 | TCONS_00002535-exon-sc0000020-1491911889:148..1297 | Clytia hemisphaerica | exon |
| TCONS_00002535-exon-sc0000020-1510915933:148..1297 | TCONS_00002535-exon-sc0000020-1510915933:148..1297 | Clytia hemisphaerica | exon |
| TCONS_00002535-exon-sc0000020-1575043694:148..1297 | TCONS_00002535-exon-sc0000020-1575043694:148..1297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:148..1297 . |
Blast
The following BLAST results are available for this feature:
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