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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002533 ID=TCONS_00002533|Name=TCONS_00002533|organism=Clytia hemisphaerica|type=transcript|length=4081bp
NAGTTTTTCCAGCATAAAGCTGACAGTCTCAATTGTCTTTTCTATCTGCC
TCCATCATGACAAGCTCAACAGGTTATGGGCCCAGTGCGAACAATCTTTG
GCAGAACACTGCTTTCGATGGagatgaaagaaaatttgagctGTGGGAGG
TGAAGTTCTTAGGATACATGAACATTCGTAAACTGAAACATGTTTTCCTT
TCTGAAGATGAAATTACAGCTGAGAAAAACGAATTAGCTTTCTCTGAACT
CATCCAATTCTTAGACGAACGTTCCATTTCACTTATTATGAGAGATGCAA
GAGACAATGGTAGACTTGCATTCAAAATCCTCAAGGAACACTATGCTGGT
TCAGGATAATAACTTTGTACACTCAGTTGACCTCTTTGATCAAACGAAAC
AATGAATCAATCACTGACTACATCTTACGAGCTGAGTCAGCTGCAAATGC
CCTACGTACCGCCAAGGAAACCGTGAGTGATGGCCTTCTTGTGGCCATGG
TTGTAAAAGGACTCCCAGATCAATACAAATCCTTTATAGCCGTTACTACC
CAATCAGAGGACGTAGtgcaagattttcaaaaattcaaacaagCCCCCAA
GAACTTCGAGGATACAGAACAGACTCGTAACAAACGTCCTGACTCAACTG
AAGGTGATAATATCATGAAGACAGACTCCTATCGTACCAAGAAACTCCCA
TGCTTTAATTGTGGTGCTGCTGGCCACAAATCAACCGACTGTCGCAAACC
CAAAAAGCAAAACTACGACAAACCGTATTGCTCATATCATAAAACCAATT
CCCATTCGAACGAGACATGTCGCAAACAAAAACGACAACACATAGCTAAA
ACCGTTTTGGACGAATCAGAAGGACATTTTCATTTGTATTCACAGTTGAG
GATAGCAACAAACTGCTTTTAAAAACTTCATCAGACAAATTTCTAGTTGA
TTGTGGTGCAACCACCCACATTGTGAACACAGACTCAAACTTTATTGACA
TTGATACAACTTTCAAACCAGACCAACATTTCATCGAACATGCTGACGGT
TCCAGATCTAACAACCTAGCAAAGAAAAAAGGGACAGTGTCAATTTCTTT
GTTATCTTCCACTGGAAAAGTCGTTAATGCAAAATTAGACAATGTATTGT
ATGTACCTTCATTTCCACAATGCATTTTCTCAGTCCAAGCAGCAACAAAG
AAAGGAACAAAATTGAACTTTGAAGGTGATCATGCTGAACTTATTACCAA
TGATGGTACCACATTCCCGATCGAGCAACATGGTCGATTGTACTACCTCT
GTAAGACATTAATATCCGATACCAGAACTGAATCGCTCAAGACATGGCAC
AAACTTCTAGGTCATTGCAACCTTTCAGACGTCAAAAAGCTAGAAGGAGT
CGCCCAAGGTATGAACATTTCAGATAAAAGTGACTTTGATTGTGAAACAT
GTATTCTCGCCAAACAGACCAACACTCGTAACCGAGATGCTGACATCCGA
GCTACCAAACCCTTCGAATTAGTCCACACTGACCTTGCTGGTCCTGTCGA
TCCTGTAGCTAAAGATGGCCACCGCTATGCTATCATTTTTNCCAAACCCT
TCGAATTAGTCCACACTGACCTTGCTGGTCCTGTCGATCCTGTAGCTAAA
GATGGCCACCGCTATGCTATGATTTTCGTTGACGATTTTTCAGGATGCTC
GTTTACATACTTCCTGAAAAACAAGTCAGATGCATTGCAAGCAACCGAGA
AATTCTTAGCGGATACCAACCCATTTGGTAATGTtaaaactttcaacttt
catacTGAATTTCTACCCACAGGAGATACCGATCGTCTACGTAGTGGCAA
TGGGGGAGAGTATATATCAGCTGAATTCAAAGCACTTTTGTTAAAGTACA
ATATCAAACATGAATTGACATCGCCCTACTCGCCACACCAAAATGGGACA
GCAGAACGAAACTGGAGAACACTTTTCGAGATGGCACGATCTTTGTTAAT
CGAAGCCAACCTACCAAAGTCACTATGGACTTACGCTGTCCTAACCGCCA
CACATATTCGAAACCGTTGCTATGTGCAAAGATTGAAAACTACACCGTAC
AGCGTAATCACTGGAAGGAAACCCGACATCTCGAAGATGCATCTATTCGG
AAGTGTTTGCTACCCTCTCATCCATGACCCAAAGAAACTAGACCCTCGAT
GCAAAAAGGGTTATTTTGTTGGGTACGATCGTGACAGCCCATCATACCTC
GTCTATCACCCAGACAAACGTACTGTCATGAAATATCGACTCGTAAAGTT
CACCGATAAATTTGAAACTAAACCGGAATCAGATCTACTCTTGCCTCCAA
CTGAACCTGAGGAGCAAGAAGTTAAGACAGAGACAGAACCATTCAAGCCA
GTAGTCAGTCCAGAGCAACGTAAAAGCTATCCATTGAGGAGCCGTCAACA
ACCAATGAAAGATGAAGATGTGAAAGAGGACACTGATTCCATCAACCACA
TTGATTTTTGCTACCTGGTGAATGCCCCGCTTACTTACCAGGAAGCCATG
ACCAGCCCAGATTCGCAAAAATGGGCAGCCGCAATGGATGATGAAATTAA
ATTGATTATACCGAAACGTTCTCTCCGACAGCCCGCATGGAATCAGTCCG
TACCATAATGCAAATCGCCATACAGAACGATCTAGTACTCCATCTAATGG
ATGTCAAGAGTGCTTAACTTCACGCTCCAATCGATGAGGACGTATATGTT
ACTCCACCGAAAGGATATGAACCCGTCAATAAAGTGTGGAAGTTGAACAA
GTCGCTTTACGGATTAAAACAGAGCGGTCGTAATTGGCACACTCTTGTAC
ACGATTATCTCATTAACGAACTATCCTTCAAGCAATCATCAGCAGACCCA
TGCGTCTATTTTCAACAGGGTGGAACCGCCATCCTACTCGTTTGGGTAGA
CGACATTATTATCGCCACACGTACCGAGTCCCACATGGCACAACTGAAAT
CAAAAttctcatcaaaatttaagatgAAAGACCTCGGACAACTATCTACC
TTCCTCGGTATTAACTTCAAACAGACAGAGGAATTCATCACCATGTCGCA
ATCACATTACCTTGAAGCTGTTTTAAAAACTTCTATGGGACTGTAAACCC
CGATCTACACCACGTGAGCAAAACCTCAAAGCTTACAATGATTCGAAATC
CGACGAGACCGACAACCAGAAGTACCGTAAAATGGTTGGAAGTCTAATTT
ACGCTATGACGTGCACAAGACCCGATATCGCTTTTGTCGTGACGAAATTA
TCTCGACATCTATCTTGCCCTGAATCATCAGATTGGGCAATGCTCAAACA
CGTCTTCCAATACATCAAAGGAACTGTTGATAAACATTTAACTTTCCGAA
AATCGCAGTTCAACCTTCGAATCCACGCATTCTGCGATGCTGATTGGGCG
TCTTCAACTGATGACCGTCGTAGCATCACTGGTTATCACATTAGCCTCAC
CGAACATGGTCCACCAATCAGTTGGAAATCCAAGAAGCAAACCTCCGTTG
CACTATCGACTTGTGAAGCCGAATACGTTTCGTTGTCAATCACATGTCAA
GAAACCATCTATCTTGCTCGTCTTCTAAATGAACTGACAGAGCACGATTT
ACAACCAACCATCATCAAGAACGACAATCAAGGAGCATTGTCATTGATTA
AGAACCCTGTTAAACATTCTAAATCGAAACACATTGATATTCGTTGCCAC
TTTATTCGAGAAGTCTATTCGAATGGAAATGTAGTTATTGATTATGTACC
ATCTGATGACAATGTTGCAGATGTCTTCACCAAACCACCAAAAAGACATC
TCCTAGTCAAATTCGGACAATTTCTTTTCGGACAGTaaacgaaaatgaaa
gtaaTCCTAAAGAGGGagtgttgatatttttattatgtttttagCTTTTA
TTTGTCTTATTTGCTTTTTGTTCCGTATTTTATTATgtcattttccataa
tggtagATTAGCTACGCATAACGTTTTTACTATCGAATATACTAGTTTTT
CCAGCATAAAGCTGACAGTCTCAATTGTCTT Run BLAST on NCBI transcript from alignment at sc0000020:998405..1002485- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002533 ID=TCONS_00002533|Name=TCONS_00002533|organism=Clytia hemisphaerica|type=transcript|length=4081bp|location=Sequence derived from alignment at sc0000020:998405..1002485- (Clytia hemisphaerica)
NAGTTTTTCCAGCATAAAGCTGACAGTCTCAATTGTCTTTTCTATCTGCC
TCCATCATGACAAGCTCAACAGGTTATGGGCCCAGTGCGAACAATCTTTG
GCAGAACACTGCTTTCGATGGAGATGAAAGAAAATTTGAGCTGTGGGAGG
TGAAGTTCTTAGGATACATGAACATTCGTAAACTGAAACATGTTTTCCTT
TCTGAAGATGAAATTACAGCTGAGAAAAACGAATTAGCTTTCTCTGAACT
CATCCAATTCTTAGACGAACGTTCCATTTCACTTATTATGAGAGATGCAA
GAGACAATGGTAGACTTGCATTCAAAATCCTCAAGGAACACTATGCTGGT
TCAGGATAATAACTTTGTACACTCAGTTGACCTCTTTGATCAAACGAAAC
AATGAATCAATCACTGACTACATCTTACGAGCTGAGTCAGCTGCAAATGC
CCTACGTACCGCCAAGGAAACCGTGAGTGATGGCCTTCTTGTGGCCATGG
TTGTAAAAGGACTCCCAGATCAATACAAATCCTTTATAGCCGTTACTACC
CAATCAGAGGACGTAGTGCAAGATTTTCAAAAATTCAAACAAGCCCCCAA
GAACTTCGAGGATACAGAACAGACTCGTAACAAACGTCCTGACTCAACTG
AAGGTGATAATATCATGAAGACAGACTCCTATCGTACCAAGAAACTCCCA
TGCTTTAATTGTGGTGCTGCTGGCCACAAATCAACCGACTGTCGCAAACC
CAAAAAGCAAAACTACGACAAACCGTATTGCTCATATCATAAAACCAATT
CCCATTCGAACGAGACATGTCGCAAACAAAAACGACAACACATAGCTAAA
ACCGTTTTGGACGAATCAGAAGGACATTTTCATTTGTATTCACAGTTGAG
GATAGCAACAAACTGCTTTTAAAAACTTCATCAGACAAATTTCTAGTTGA
TTGTGGTGCAACCACCCACATTGTGAACACAGACTCAAACTTTATTGACA
TTGATACAACTTTCAAACCAGACCAACATTTCATCGAACATGCTGACGGT
TCCAGATCTAACAACCTAGCAAAGAAAAAAGGGACAGTGTCAATTTCTTT
GTTATCTTCCACTGGAAAAGTCGTTAATGCAAAATTAGACAATGTATTGT
ATGTACCTTCATTTCCACAATGCATTTTCTCAGTCCAAGCAGCAACAAAG
AAAGGAACAAAATTGAACTTTGAAGGTGATCATGCTGAACTTATTACCAA
TGATGGTACCACATTCCCGATCGAGCAACATGGTCGATTGTACTACCTCT
GTAAGACATTAATATCCGATACCAGAACTGAATCGCTCAAGACATGGCAC
AAACTTCTAGGTCATTGCAACCTTTCAGACGTCAAAAAGCTAGAAGGAGT
CGCCCAAGGTATGAACATTTCAGATAAAAGTGACTTTGATTGTGAAACAT
GTATTCTCGCCAAACAGACCAACACTCGTAACCGAGATGCTGACATCCGA
GCTACCAAACCCTTCGAATTAGTCCACACTGACCTTGCTGGTCCTGTCGA
TCCTGTAGCTAAAGATGGCCACCGCTATGCTATCATTTTTNCCAAACCCT
TCGAATTAGTCCACACTGACCTTGCTGGTCCTGTCGATCCTGTAGCTAAA
GATGGCCACCGCTATGCTATGATTTTCGTTGACGATTTTTCAGGATGCTC
GTTTACATACTTCCTGAAAAACAAGTCAGATGCATTGCAAGCAACCGAGA
AATTCTTAGCGGATACCAACCCATTTGGTAATGTTAAAACTTTCAACTTT
CATACTGAATTTCTACCCACAGGAGATACCGATCGTCTACGTAGTGGCAA
TGGGGGAGAGTATATATCAGCTGAATTCAAAGCACTTTTGTTAAAGTACA
ATATCAAACATGAATTGACATCGCCCTACTCGCCACACCAAAATGGGACA
GCAGAACGAAACTGGAGAACACTTTTCGAGATGGCACGATCTTTGTTAAT
CGAAGCCAACCTACCAAAGTCACTATGGACTTACGCTGTCCTAACCGCCA
CACATATTCGAAACCGTTGCTATGTGCAAAGATTGAAAACTACACCGTAC
AGCGTAATCACTGGAAGGAAACCCGACATCTCGAAGATGCATCTATTCGG
AAGTGTTTGCTACCCTCTCATCCATGACCCAAAGAAACTAGACCCTCGAT
GCAAAAAGGGTTATTTTGTTGGGTACGATCGTGACAGCCCATCATACCTC
GTCTATCACCCAGACAAACGTACTGTCATGAAATATCGACTCGTAAAGTT
CACCGATAAATTTGAAACTAAACCGGAATCAGATCTACTCTTGCCTCCAA
CTGAACCTGAGGAGCAAGAAGTTAAGACAGAGACAGAACCATTCAAGCCA
GTAGTCAGTCCAGAGCAACGTAAAAGCTATCCATTGAGGAGCCGTCAACA
ACCAATGAAAGATGAAGATGTGAAAGAGGACACTGATTCCATCAACCACA
TTGATTTTTGCTACCTGGTGAATGCCCCGCTTACTTACCAGGAAGCCATG
ACCAGCCCAGATTCGCAAAAATGGGCAGCCGCAATGGATGATGAAATTAA
ATTGATTATACCGAAACGTTCTCTCCGACAGCCCGCATGGAATCAGTCCG
TACCATAATGCAAATCGCCATACAGAACGATCTAGTACTCCATCTAATGG
ATGTCAAGAGTGCTTAACTTCACGCTCCAATCGATGAGGACGTATATGTT
ACTCCACCGAAAGGATATGAACCCGTCAATAAAGTGTGGAAGTTGAACAA
GTCGCTTTACGGATTAAAACAGAGCGGTCGTAATTGGCACACTCTTGTAC
ACGATTATCTCATTAACGAACTATCCTTCAAGCAATCATCAGCAGACCCA
TGCGTCTATTTTCAACAGGGTGGAACCGCCATCCTACTCGTTTGGGTAGA
CGACATTATTATCGCCACACGTACCGAGTCCCACATGGCACAACTGAAAT
CAAAATTCTCATCAAAATTTAAGATGAAAGACCTCGGACAACTATCTACC
TTCCTCGGTATTAACTTCAAACAGACAGAGGAATTCATCACCATGTCGCA
ATCACATTACCTTGAAGCTGTTTTAAAAACTTCTATGGGACTGTAAACCC
CGATCTACACCACGTGAGCAAAACCTCAAAGCTTACAATGATTCGAAATC
CGACGAGACCGACAACCAGAAGTACCGTAAAATGGTTGGAAGTCTAATTT
ACGCTATGACGTGCACAAGACCCGATATCGCTTTTGTCGTGACGAAATTA
TCTCGACATCTATCTTGCCCTGAATCATCAGATTGGGCAATGCTCAAACA
CGTCTTCCAATACATCAAAGGAACTGTTGATAAACATTTAACTTTCCGAA
AATCGCAGTTCAACCTTCGAATCCACGCATTCTGCGATGCTGATTGGGCG
TCTTCAACTGATGACCGTCGTAGCATCACTGGTTATCACATTAGCCTCAC
CGAACATGGTCCACCAATCAGTTGGAAATCCAAGAAGCAAACCTCCGTTG
CACTATCGACTTGTGAAGCCGAATACGTTTCGTTGTCAATCACATGTCAA
GAAACCATCTATCTTGCTCGTCTTCTAAATGAACTGACAGAGCACGATTT
ACAACCAACCATCATCAAGAACGACAATCAAGGAGCATTGTCATTGATTA
AGAACCCTGTTAAACATTCTAAATCGAAACACATTGATATTCGTTGCCAC
TTTATTCGAGAAGTCTATTCGAATGGAAATGTAGTTATTGATTATGTACC
ATCTGATGACAATGTTGCAGATGTCTTCACCAAACCACCAAAAAGACATC
TCCTAGTCAAATTCGGACAATTTCTTTTCGGACAGTAAACGAAAATGAAA
GTAATCCTAAAGAGGGAGTGTTGATATTTTTATTATGTTTTTAGCTTTTA
TTTGTCTTATTTGCTTTTTGTTCCGTATTTTATTATGTCATTTTCCATAA
TGGTAGATTAGCTACGCATAACGTTTTTACTATCGAATATACTAGTTTTT
CCAGCATAAAGCTGACAGTCTCAATTGTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002533-exon-sc0000020-1575043694:998405..1002485 | TCONS_00002533-exon-sc0000020-1575043694:998405..1002485 | Clytia hemisphaerica | exon |
| TCONS_00002533-exon-sc0000020-1510915933:998405..1002485 | TCONS_00002533-exon-sc0000020-1510915933:998405..1002485 | Clytia hemisphaerica | exon |
| TCONS_00002533-exon-sc0000020-1491911889:998405..1002485 | TCONS_00002533-exon-sc0000020-1491911889:998405..1002485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:998405..1002485 - |
Blast
The following BLAST results are available for this feature:
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