TCONS_00002504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002504
Unique NameTCONS_00002504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002504 ID=TCONS_00002504|Name=TCONS_00002504|organism=Clytia hemisphaerica|type=transcript|length=741bp
ACCGACTAACTGTTGTTACTGAATCAGAGTAAAAATGAAGTACCACATTA
TAGTGTTATCGTGTTTGCTATGGATAAAATTAACAGaatgttttcaatgg
GACAATTCAGTTAGTGATTCATCCGTTTATGCTAACAACTCAGGCTCCGC
AATTATCAAGTTCAGATATAGCTATGGAGCTGAAGACCGTTCAAGTGTTT
ATATTACATGTGGAATATGGAATACAGATCAAACCAAAATTATTCCCATG
GTGACTAAAATTGGTAACCAACCTGCACAAAGAAGAAGTGGAGTTACTGG
CGATGTTTTAGGGAATAATGCAGCTCTTTATACAGAATCTACACAACCAA
CTGTTATTGGGTTAAGATTGAGTAATATTGCAAAGACCTTCCCAACTCAG
TACCGTTGCGATGCATCTTTTACTAAAGCCGATGGTGTGGCTGATAGTGT
CCTAAGTGAACGTGTCATCCTTAATGTCTTagaaCGTCCAAAATTTACAA
ACTGTTTGCAAAACATACAATCCAAAGAAACTGTGGCTGGCAACTCACTC
GATATAACATGCAAAGTCTCTGGCAATCCAACTCCTAACTTGAAATGTTC
ATTGTTGGCTTTTgatagagaaattttaaatactTTCCCTAAAAAAAATA
GTGGTCGAAATCTCGAGGAAGATGGTAATGATTTACTCACTTTTTTATAG
TAGTTGAGTCCCCTTAATTCGAACAAGCACGGGGAGCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00002504-protein

>TCONS_00002504-protein ID=TCONS_00002504-protein|Name=TCONS_00002504-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MKYHIIVLSCLLWIKLTECFQWDNSVSDSSVYANNSGSAIIKFRYSYGAE
DRSSVYITCGIWNTDQTKIIPMVTKIGNQPAQRRSGVTGDVLGNNAALYT
ESTQPTVIGLRLSNIAKTFPTQYRCDASFTKADGVADSVLSERVILNVLE
RPKFTNCLQNIQSKETVAGNSLDITCKVSGNPTPNLKCSLLAFDREILNT
FPKKNSGRNLEEDGNDLLTFL
Run BLAST on NCBI

transcript from alignment at sc0000020:441087..444471-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002504 ID=TCONS_00002504|Name=TCONS_00002504|organism=Clytia hemisphaerica|type=transcript|length=3385bp|location=Sequence derived from alignment at sc0000020:441087..444471- (Clytia hemisphaerica)
ACCGACTAACTGTTGTTACTGAATCAGAGTAAAAATGAAGTACCACATTA
TAGTGTTATCGTGTTTGCTATGGATAAAATTAACAGGTAATTACAATTTT
TTTGTACAGTAGAGTCTCGAACCTTTATAATTCGAGTGTCTCCTTAACTC
GAATAAGCTCCCTCGTCCCTTACCGTCGTTTCGTATAAGATTCCCATTTC
CTCATTAAGATTCTCGTTATTTTTCCGGGATAACTAGCACGAGATCAGAA
AGGGTTTGCTTGTAAAGGTACGGAAGGTGTTGAAGTTACTCACGAAATTG
CCCAATAGTCCAGGGAAAGTGTGCTAAAAATGAAAACAATTGTCCATTTT
GAGATACATACCATGATGATTTTTAGAATCAGTATGAAAAAACCTTTCCA
ACGGTATATAATATCACATGTTTTGGAACAAAAATAAAAAAGATTTTCCG
GCATGCAGACTGGTCTGTAAATTACTTCCGTAGCTCATAACTCGGACCCA
GTCCATTTTCAGATATATGTTGTGATGTTTTTTAGAATCAGTGTGAGAAA
ACCTTTCCAACGATATATTATATGACATGCTTTGAAGCTTTGAATTTTTT
TCTTGCCTGGGAGGCATTCTGGTCTGTAAAATACACAAACAGGTGTTCTG
GAAGTGGGTCAGAGGCTTAAAATGTTTCTTACCCCCTAAGGTACCACTGT
ACGAAATTTCATGCTTTCTAGTCAAAAACGCACAATTGATGCACACTTTC
CCTGGACTATAACTTTCCGAAGCTTAATTTTCAACTACCCAAAGAAAAGC
TAGAAAAGTGGAAAAGGAATCTTAGTACGGAAATGGGAATCTTATACAAA
ACAACGGTATAAACCTTACTCCGTAAGTAGAATTTTCCTAACTCGAACAA
ATTTGTGTTCCCCTTGCGACTTCGAGTTATGGAGACTCGACTGTATTATA
TATTTTCTAAGTGCTATGGAATATAGTTTTTACAGTCTTCACTATTATAA
ATACTTGGAAGTATTCTTAACTTTAATCTCTCTGTCTTTATGTTTCAAAT
CCTTTAAAAGGCAGTCTGGAGACTTTGGAAATCGTCAGATTCGGATGAAA
TTTAATTAAGCTTGCTCCTTGTGTGCCTTTTTTCATTTTTTCAAAAATTT
TTATCTTTAAGGCCTAGAACGATCTTTTCACTATACCTTCGATTTAGCCC
CCGTTTGTCTGTGTACAAAATAATTTTTTTTTTTAACTTTCAGAATGTTT
TCAATGGGACAATTCAGTTAGTGATTCATCCGTTTATGCTAACAACTCAG
GCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCTGAAGACCGTTCA
AGTGTTTATATTACATGTGGAATATGGAATACAGATCAAACCAAAATTAT
TCCCATGGTGACTAAAATTGGTAACCAACCTGCACAAAGAAGAAGTGGAG
TTACTGGCGATGTTTTAGGGAATAATGCAGCTCTTTATACAGAATCTACA
CAACCAACTGTTATTGGGTTAAGATTGAGTAATATTGCAAAGACCTTCCC
AACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCCGATGGTGTGGCTG
ATAGTGTCCTAAGTGAACGTGTCATCCTTAATGTCTTAGGTATATATTTT
TAAATACATCGCCGTGTCAATTCAAGACAGACTTAAGTCCATTTTTTCGA
AAATTGACCACAACTCCCCTTTTTCAGCATGCACGCTTTCCAAAAACGGC
CTCAAATCCACAGAGTTCTAATGGTAAAGAGGTGTATTTTGCAATTCAAA
AAAAAGATATCAACGATAAACAGCCTCAGGTCCTAAATTTTAGGCCAAAT
TTTATTTTCTATGAAGCATTGACATGGAATGTGTAGCCTTAAGTCCAAGT
GTTTTGAATTGACAAGGCGATATGGTCTTTCCTCAATAGGATATACAGTA
ACAGTGTTAGTAAAAGTACACATTTTTTTCTTAAGAAAAATTATTGAAGC
CTTCGGGTATTCTTAGCTTTTTAAGTTCTCAAAATGTTATTATTTTCACC
ATTTTGTGAGAATTTTTGTTCGATTTCATAAAAAATTGGTGTTTTAGAGT
TTACAAAGACTTGAAATGTTCTTAATTTGTTCTTAATATTTTGATTAGCG
AAGCCATATGTTCTTATCAAATCTATTCTGATAAAAAAGCGTGTATTGAT
ATAGACGATGTTATTGTCCGTTACAGTGATAGTAAAGGCGGGAAAATGCG
GCGGTATGCGGAAAAAAAATCGGTGGGAGAGTTTTGAAGACTGGCAACTC
TACCGACTTTAAACTCTTTTCCGCAAAAAACTCGTTTGCGAATTTTCTTC
GGTTTTGGGTGGCCTTTTTTCTTAGATAGTGATTCGTCTTAGACTATAGC
ATAGTCTAGCGTCTTAGACTGTAGCATAGTCTAGTATTAATAGTGAGACT
TGCCGACTTAAAAGGAAAGATACATTTTAATTTTGACTGTCATGTTTAGC
AATTTTGACTCAATGGGTAAAAGCCATGACATAAAGCAAGAAATTACTTT
CAAAAAAGTGCTTTGAAAGTTCAAAAGTTGAACTACTCAAAAAATGTTAA
AAAGAAAAGCTACTGTACTGTAATTATAGGAAGGCCAATTTTTTACTTTC
GACCAATATTCAATTAATTTGTCTGTTGAACCATGACAATTGATTTTTGT
CAACTTCAAACAAAATTGAAAAATCAAAATGTGGGCTTAAAATTTTTTAA
AGATACTCCAACGATAAATTGAATGCTTTAAGGCTGGGGAACCAAAAGTT
TTTTTCAACAATGCAACATGCTTCCATCCCACCAACCTGAAACGCTTTCT
CGTGTCTCCACCCCATTTTTCATTTAATAACATTTGTGCTTCTCTCACTT
TTAGCCCAGGGACAAAATCAGCGTGTCTTTTGGATATTTCCCTTACTTTT
TGTCAATTTTGTCCCATGAAACAAAAAAAGAAACCATGAGACACGCACCT
TTTTCTTGTGTTGGTGGGATGGAGCATGTTGCATTGCACCAACGCAAAAA
AAAGGTGCGTGCCCACAAGGTCATCGATTTTTGGATTCGTAATAATCCAT
CCACCTTTATTATTTTATATTTTCAGAACGTCCAAAATTTACAAACTGTT
TGCAAAACATACAATCCAAAGAAACTGTGGCTGGCAACTCACTCGATATA
ACATGCAAAGTCTCTGGCAATCCAACTCCTAACTTGAAATGTTCATTGTT
GGCTTTTGATAGAGAAATTTTAAATACTTTCCCTAAAAAAAATAGTGGTC
GAAATCTCGAGGAAGATGGTAATGATTTACTCACTTTTTTATAGTAGTTG
AGTCCCCTTAATTCGAACAAGCACGGGGAGCTGNN

Coding sequence (CDS) from alignment at sc0000020:441087..444471-

>TCONS_00002504 ID=TCONS_00002504|Name=TCONS_00002504|organism=Clytia hemisphaerica|type=CDS|length=1998bp|location=Sequence derived from alignment at sc0000020:441087..444471- (Clytia hemisphaerica)
AACGTCCAAAATTTACAAACTGTTTGCAAAACATACAATCCAAAGAAACT
GTGGCTGGCAACTCACTCGATATAACATGCAAAGTCTCTGGCAATCCAAC
TCCTAACTTGAAATGTTCATTGTTGGCTTTTGATAGAGAAATTTTAAATA
CTTTCCCTAAAAAAAATAGTGGTCGAAATCTCGAGGAAGATGGTAATGAT
TTACTCACTTTTTTATAGAATGTTTTCAATGGGACAATTCAGTTAGTGAT
TCATCCGTTTATGCTAACAACTCAGGCTCCGCAATTATCAAGTTCAGATA
TAGCTATGGAGCTGAAGACCGTTCAAGTGTTTATATTACATGTGGAATAT
GGAATACAGATCAAACCAAAATTATTCCCATGGTGACTAAAATTGGTAAC
CAACCTGCACAAAGAAGAAGTGGAGTTACTGGCGATGTTTTAGGGAATAA
TGCAGCTCTTTATACAGAATCTACACAACCAACTGTTATTGGGTTAAGAT
TGAGTAATATTGCAAAGACCTTCCCAACTCAGTACCGTTGCGATGCATCT
TTTACTAAAGCCGATGGTGTGGCTGATAGTGTCCTAAGTGAACGTGTCAT
CCTTAATGTCTTAGATGAAGTACCACATTATAGTGTTATCGTGTTTGCTA
TGGATAAAATTAACAGAACGTCCAAAATTTACAAACTGTTTGCAAAACAT
ACAATCCAAAGAAACTGTGGCTGGCAACTCACTCGATATAACATGCAAAG
TCTCTGGCAATCCAACTCCTAACTTGAAATGTTCATTGTTGGCTTTTGAT
AGAGAAATTTTAAATACTTTCCCTAAAAAAAATAGTGGTCGAAATCTCGA
GGAAGATGGTAATGATTTACTCACTTTTTTATAGAATGTTTTCAATGGGA
CAATTCAGTTAGTGATTCATCCGTTTATGCTAACAACTCAGGCTCCGCAA
TTATCAAGTTCAGATATAGCTATGGAGCTGAAGACCGTTCAAGTGTTTAT
ATTACATGTGGAATATGGAATACAGATCAAACCAAAATTATTCCCATGGT
GACTAAAATTGGTAACCAACCTGCACAAAGAAGAAGTGGAGTTACTGGCG
ATGTTTTAGGGAATAATGCAGCTCTTTATACAGAATCTACACAACCAACT
GTTATTGGGTTAAGATTGAGTAATATTGCAAAGACCTTCCCAACTCAGTA
CCGTTGCGATGCATCTTTTACTAAAGCCGATGGTGTGGCTGATAGTGTCC
TAAGTGAACGTGTCATCCTTAATGTCTTAGATGAAGTACCACATTATAGT
GTTATCGTGTTTGCTATGGATAAAATTAACAGAACGTCCAAAATTTACAA
ACTGTTTGCAAAACATACAATCCAAAGAAACTGTGGCTGGCAACTCACTC
GATATAACATGCAAAGTCTCTGGCAATCCAACTCCTAACTTGAAATGTTC
ATTGTTGGCTTTTGATAGAGAAATTTTAAATACTTTCCCTAAAAAAAATA
GTGGTCGAAATCTCGAGGAAGATGGTAATGATTTACTCACTTTTTTATAG
AATGTTTTCAATGGGACAATTCAGTTAGTGATTCATCCGTTTATGCTAAC
AACTCAGGCTCCGCAATTATCAAGTTCAGATATAGCTATGGAGCTGAAGA
CCGTTCAAGTGTTTATATTACATGTGGAATATGGAATACAGATCAAACCA
AAATTATTCCCATGGTGACTAAAATTGGTAACCAACCTGCACAAAGAAGA
AGTGGAGTTACTGGCGATGTTTTAGGGAATAATGCAGCTCTTTATACAGA
ATCTACACAACCAACTGTTATTGGGTTAAGATTGAGTAATATTGCAAAGA
CCTTCCCAACTCAGTACCGTTGCGATGCATCTTTTACTAAAGCCGATGGT
GTGGCTGATAGTGTCCTAAGTGAACGTGTCATCCTTAATGTCTTAGATGA
AGTACCACATTATAGTGTTATCGTGTTTGCTATGGATAAAATTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001340XLOC_001340Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002504-proteinTCONS_00002504-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002504-exon-sc0000020-1575043694:444386..444471TCONS_00002504-exon-sc0000020-1575043694:444386..444471Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1575043694:442833..443228TCONS_00002504-exon-sc0000020-1575043694:442833..443228Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1575043694:441087..441345TCONS_00002504-exon-sc0000020-1575043694:441087..441345Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1510915933:444386..444471TCONS_00002504-exon-sc0000020-1510915933:444386..444471Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1510915933:442833..443228TCONS_00002504-exon-sc0000020-1510915933:442833..443228Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1510915933:441087..441345TCONS_00002504-exon-sc0000020-1510915933:441087..441345Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1491911889:444386..444471TCONS_00002504-exon-sc0000020-1491911889:444386..444471Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1491911889:442833..443228TCONS_00002504-exon-sc0000020-1491911889:442833..443228Clytia hemisphaericaexon
TCONS_00002504-exon-sc0000020-1491911889:441087..441345TCONS_00002504-exon-sc0000020-1491911889:441087..441345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:441087..444471 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.205457	0.215784	0.153824	2.7238	1.08817	2.49283	4.08914	5.30299	10.7513	16.4418	4.45475	46.679	21.6767	8.20537	24.3917	4.54496	5.84531	0.286576	0.659319	0.0674478	0.196735	0	0	0.143399	0.513528	4.35511	2.08627	2.60451	1.17988
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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