TCONS_00002497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002497
Unique NameTCONS_00002497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3161

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002497 ID=TCONS_00002497|Name=TCONS_00002497|organism=Clytia hemisphaerica|type=transcript|length=3161bp
TAAAAACGTGGTGAAAAGATTATACTCGAGTATGGAGGAACGTATTCACG
AACAATTTTTAGANGAAacaattttgatataaaaacGTGGTGAAAAGATT
ATACTCGAGTATGGAGGAACGTATTCACGAACAGATTTTAGAATTGAAGG
CTCGTTTAATCGACACAAGCCAGTTCATTGCACAGAACTCAATCTACCAA
CAAATAAAGAAACAGAGTGCTAAGAGTTTGAAATCACAAATCTCTCAATT
CAATTTAGGTAatggcaaaaagtttcaagatcCAATCAAAGCATCTGAGT
ACTTGCTGCAAAGAGAATATGGACAAACGTTTTTGTTCGATGAGAAACTC
AACCAACCTGTCTTCATCCCACCTGTTTTTACATCATCGCAATCTGCTGA
CAAAGCAGTTTTAGATTTCAATGTGGATAGCTCTATACAAGAGACACTTG
TCAATTTAAAACGTGACCAACCTGATTTCTGGTTCACTAAGGATCTTGAA
GCTTTCATTCAACTTCATCAGGACTCTGAAGGTCGGTTTAAGAAACTAGA
TGAAATATTTCATCCATGGATTTTAAACATGAAATTAAAATATCTTGCTA
TTCACGAGTTGAAAACTGACGGAAATGAACTGCATCTTCCTTTGGCAATC
GAAGATAAAGCTACCCTATTGAAAGATTTAATCGTTGCATTACCAAAAGA
TTCTGAGCTGCGATTGGATTTATCATCCATCGTCAATAAAAACACTGGAA
GGATTGTTGAAAATCATTTGAAAAATAAGCAGCCGACTGATTCCAATTTG
AAGTGGTTCTTCAATCTAGATCTTGGTGATAGAGGAAATCGAATCGAAAA
TTGGTTTTTCGACCAATTATTGGACGCTGATGATGAATTAGTGAGTGATC
TAGTTATTTTACAATCTGTCAATTTCTTCACCAATTTGAAGAACAAGATG
CACCAAGAGTATGACTTTCTTATCTTCTCGTGGTCTCGTAAACTCATCAT
AGGTGtggaaatgaaaagaaaaatctccATGAAAGCATTTGAACAATTAG
AAAGATATCACACGCTCTTTGAAGAACGATTGAGTGACCAATTGGAGTCA
GGATGGATCTTCTTCCCTGCTGTTTGCGTGGAGAATTCATCCACTCATTT
GATTGGTGTATCACCTCATTTCATTACAATAGAAACAAACATCGTGCAAT
GGCTTGGTCAAATATTGGCTCGCTTTCCTACGTGTCGGTATCAGTTACCC
CTCATTCACCCCCTGGATCAATTGAAGAAGATATTGCAAATCATCGTTTT
TACCGTCCATGTGTCCAAAAAACACCAACCACAACCTATCACCCAATCTA
ACTGGGTGCAATACATCGACCAAACCATCCAAACACTCTCCAACAAAGAC
AACATTGTCTTTTATTCAGCCAATCAATTACCCGTTTTCGTCGGCGGCAA
TTCTCGTTATAATAAACTCGTCATAACCGGTGGTTTTGGGAGTggcaaaa
gttttttgatgcaAGAGAAGGCGTTGGTGCTTAGCCAGCTGCCTGAATGT
AAAGGACGTATAATGTACGTGTGCAGATTCAAGCATTCAGAAAATGGTAG
TTTGTTTTATCATTCTTTGAAGCAGCAATTGGAACCACATGGAATTCTTG
TTAAAACGACTATTAATAGCgattGTCAAGGTGACTTGTTAAAGTCGATC
AAGTCCAAAGAGATAAATGTTCTATTTCTCGATGAATGGGCAATCGACGA
AGAATTTATCAGCAGTCTTCCTTCATCAGTTACCACTGTATGGATAGCAC
CGAACGTAGCAAGTCAATTCAACAATTTTCAAGAACGACTCCAAAAAGAA
GGATTTCAGCTCCTTAAACTATGCCTCAATCTTAGAAACAGTAAGGAGAT
TGTCAAAGCATCGAAAGAGCTAGCTGAGGAAACGCATTATCGATATCCGG
AGGGTCTCAAAATGCCGCCTGAGAATTTCCCACGTGGTCAAACACCTGTA
GTTGTCAAGGATGTTGAAGTTGCGTTGGCGCTAGCTCTAGATACGAACCA
TGATGGCGGAATTCTTGTGGCTGTTGGTGATGGAAGCTTCGAGGATGACA
TCGAGACAATATCTTCGTACACTGTGTGTGGTCAAGTCATGCGTTACCAG
AGAGGCAACATAACCTTCCATGAAAATTGTGATCCGtatcgatttttgaa
aacaagaggCGCCATTTTGGTTACAGATCATTTCTTTATCACCGGTTTTG
AATATCCAACCATTATCTATATCAAAAAAGATGCAGTACCTATTCAAATT
TTTGTCGAAGAGCACGAGTGTAACCTTTATCTACGCTGCACAACGCAATT
GATCATTGTCGACAAATGCAAACAAGAAGCGTCAACTGAGATGCAGCAAT
TGTCGAAGATTTTTAATAAATATGTTGGTACATTCGACTGGTGTCCGTTA
GCGTCTGTTCAAAAGGTTGTAGACGTGCCTAAAGAATTAGTTGAAGAACG
GGAGATATACAAGCATGCAATTGAGGAAAACTGGGGCAATAACAACACTG
AGGTAGGTGTCATGTCGAGTATCAGAAATGAACACCCTCATGGCCTTTTT
GGTTTCATGCTTCGTTGTTTCAAGCTTCTTTTACCAGCGCTTGAAGACAA
CGAGGATGAAAATGCAAGAATCATAAAGAAATGCTATGCACCTGGTGGGT
TAGAAGAGCTTTATTATCGTTGTTTTAACAATTATGCGACAGATCCGACA
GTATGTACGATTTTTATGGAAAGAATCGTTGAATTGTTGGAACTGGTCAT
GGCCGTTTGTAAATATGTTGGTGAAATTGATGATtaataaaatcttcaaa
aatacgaaaaaggAGGAACTTCATTGACTGGCTAATTTTTACGCTGTACC
TTATTGTACCcatttgttaatatttttcaattttaaaaatagtTGTATTT
CCATTTGTTGTGCGCGCTTTTGTGATAATTGCGCCAATTCGTAATATGTA
CCtgcgcaaatttgtaaaaattgtttCGCTATTTTATAATGCCTACGTGC
AAATTTGTGATAACCGTTGCGCTTTCGACTGcgctttttttgtaatttcc
gactgcgcagaaatgtaatactacTTCCctgatttggattttttttaaac
atagaAGGAGC
Run BLAST on NCBI

transcript from alignment at sc0000020:286597..297991-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002497 ID=TCONS_00002497|Name=TCONS_00002497|organism=Clytia hemisphaerica|type=transcript|length=11395bp|location=Sequence derived from alignment at sc0000020:286597..297991- (Clytia hemisphaerica)
TAAAAACGTGGTGAAAAGATTATACTCGAGTATGGAGGAACGTATTCACG
AACAATTTTTAGANGAAACAATTTTGATATAAAAACGTGGTGAAAAGATT
ATACTCGAGTATGGAGGAACGTATTCACGAACAGATTTTAGAATTGAAGG
CTCGTTTAATCGACACAAGCCAGTTCATTGCACAGAACTCAATCTACCAA
CAAATAAAGAAACAGAGTGCTAAGAGTTTGAAATCACAAATCTCTCAATT
CAATTTAGGTAATGGCAAAAAGTTTCAAGATCCAATCAAAGCATCTGAGT
ACTTGCTGCAAAGAGAATATGGACAAACGTTTTTGTTCGATGAGAAACTC
AACCAACCTGTCTTCATCCCACCTGTTTTTACATCATCGCAATCTGCTGA
CAAAGCAGTTTTAGATTTCAATGTGGATAGCTCTATACAAGAGACACTTG
TCAATTTAAAACGTGACCAACCTGATTTCTGGTTCACTAAGGATCTTGAA
GCTTTCATTCAACTTCATCAGGACTCTGAAGGTCGGTTTAAGAAACTAGA
TGAAATATTTCATCCATGGATTTTAAACATGAAATTAAAATATCTTGCTA
TTCACGAGTTGAAAACTGACGGAAATGAACTGCATCTTCCTTTGGCAATC
GAAGATAAAGCTACCCTATTGAAAGATTTAATCGTTGCATTACCAAAAGA
TTCTGAGCTGCGATTGGATTTATCATCCATCGTCAATAAAAACACTGGAA
GGATTGTTGAAAATCATTTGAAAAATAAGCAGCCGACTGATTCCAATTTG
AAGTGGTTCTTCAATCTAGATCTTGGTGATAGAGGAAATCGAATCGAAAA
TTGGTTTTTCGACCAATTATTGGACGCTGATGATGAATTAGTGAGTGATC
TAGTTATTTTACAATCTGTCAATTTCTTCACCAATTTGAAGAACAAGATG
CACCAAGAGTATGACTTTCTTATCTTCTCGTGGTCTCGTAAACTCATCAT
AGGTGTGGAAATGAAAAGAAAAATCTCCATGAAAGCATTTGAACAATTAG
AAAGATATCACACGCTCTTTGAAGAACGATTGAGTGACCAATTGGAGTCA
GGATGGATCTTCTTCCCTGCTGTTTGCGTGGAGAATTCATCCACTCATTT
GATTGGTGTATCACCTCATTTCATTACAATAGAAACAAACATCGTGCAAT
GGCTTGGTCAAATATTGGCTCGCTTTCCTACGTGTCGGTATCAGGTATGT
CTGTTTAATATTATTGTAAAACCTGGCTCTAGCCACCTATAAGATGTATG
AGTTTTGGCAAGTTTGCTTTGACCAGGCTTATGGCTTACTCTTCTAGCCT
AAAAGGACATGTCTGTTTTCTTCAAGTCGGTTTATTTCATGGCGGTGATA
ACAGGTTCAAGCCTCTTCTCTTCTATAATCTTTTTTATTCTTTTTCTCCT
TGAAATAACAACATCGATGAAAATCTCGCAATTGTTGTCTAACAACTTTT
TAGTTACCCCTCATTCACCCCCTGGATCAATTGAAGAAGATATTGCAAAT
CATCGTTTTTACCGTCCATGTGTCCAAAAAACACCAACCACAACCTATCA
CCCAATCTAACTGGGTGCAATACATCGACCAAACCATCCAAACACTCTCC
AACAAAGACAACATTGTCTTTTATTCAGCCAATCAATTACCCGTTTTCGT
CGGCGGCAATTCTCGTTATAATAAACTCGTCATAACCGGTGGTTTTGGGA
GTGGCAAAAGTTTTTTGATGCAAGAGAAGGCGTTGGTGCTTAGCCAGCTG
CCTGAATGTAAAGGACGTATAATGTACGTGTGCAGATTCAAGCATTCAGA
AAATGGTAGTTTGTTTTATCATTCTTTGAAGCAGCAATTGGAACCACATG
GAATTCTTGTTAAAACGACTATTAATAGCGTAAGTTATTATACTTTTAAT
GACAATTTAACGTTAATTTAACGTGCTCATTAGTGGTAATTTTAAACAAT
TGTTGCCTGTACTCTAGACTAGTATAGTCGTTGAATGAAAATCATCACAC
CGGAAAATCTTACTAGAGTGGTAAAATCGGGAAACCGTATCTAGAACGAT
ATTCTCAAATTTCAATGTTATTTTCCTTCTCTCTCGCGCGCTAATTNNNN
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ATTTTGTTGCGCGCGGTAAATAACAGACTTGTTTACAAGTCTACCTGTAC
TCTTTTGTTGGACCTACTTCGGAGGTCCTTTAAATTAACCGATGTTCGTC
CGTCCATTCGCCTGTTCGTCTGTTACCAGCTTTTCTCAATGTTGACTCAT
TAGTTTTTTCTTATTTTTTGCACAATGATGCAAAGTGGCAATACCTAAAG
TGTACCTGAGCACGATTTTCGAAAAGAATTTCTTTTCGGCCGAAAATGCT
GGAAAAATGCCGAAAAAAACCAGTGTTTTGGCATTTTCTCGAGATTTCAT
CATTTATTTTTCCGATTTTTGGCTCAAAAATGCGTATTAGCTTATAGCAA
TGCCCGAAATGTGGCCGAGTCGGATTTTTGAGAAATTCTTTTTCAATTCG
TAAATGCTTAAAATTGCCGTTTTTGCAGATTTTCATTGGGCTTTTTTTGG
CCTTATATTTCTTTGTTATTTCTGTATATTTCTTATGCCNTTTTATCATT
CTTTGAAGCAGCAATTGGAACCACATGGAATTCTTGTTAAAACGACTATT
AATAGCGTAAGTTATTATACTTTTAATGACAATTTAACGTTAATTTAACG
TGCTCATTAGTGGTAATTTTAAACAATTGTTGCCTGTACTCTAGACTAGT
ATAGTCGTTGAATGAAAATCATCACACCGGAAAATCTTACTAGAGTGGTA
AAATCGGGAAACCGTATCTAGAACGATATTCTCAAATTTCAATGTTATTT
TCCTTCTCTCTCGCGCGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTGCGCGCGGT
AAATAACAGACTTGTTTACAAGTCTACCTGTACTCTTTTGTTGGACCTAC
TTCGGAGGTCCTTTAAATTAACCGATGTTCGTCCGTCCATTCGCCTGTTC
GTCTGTTACCAGCTTTTCTCAATGTTGACTCATTAGTTTTTTCTTATTTT
TTGCACAATGATGCAAAGCAGTGCAAAGTGGCAATACCTAAAGTGTACCT
GAGCACGATTTTCGAAAAGAATTTCTTTTCGGCCGAAAATGCTGGAAAAA
TGCCGAAAAAAAACCGTGTTTTGGCATTTTCTCGAGATTTCATCATTTAT
TTTTCCGATTTTTGGCTCAAAAATGCGTATTAGCTTATAGCAATGCCCGA
AATGTGGCCGAGTCGGATTTTTGAGAAATTCTTTTTCAATTCGTAAATGC
TTAAAATTGCCGTTTTTGCAGATTTTCATTGGGCTTTTTTTGGCCTTATA
TTTCTTTGTTATTTCTGTATATTTCTTATGCCCATCATCAAGCATGATTC
GATTGCCAATAAAACTGATTTTTGCAACCGGAACTTTCTATTTTTCCCCT
ACTCCACTTCCCTCCCCCCCATCAACAATCAATGATGAAATCTAATGCGT
TATGCATTTTCGCTAACAAAAGCTTTATTTTCTAACTGATTACTTTCATT
TCTCTCCTTATTGCCATCTAGCTTTCATCATCAGGTAAGTCCATTCAGCA
TCTAGCTTGTGTTTTTTAAAAGCATCTGCACAAAAAAAATTAGAAGGATC
ACTGTAAGTTTAAATTGGATAAACCTAAAGCATCTACGGACAAATCTTCA
TCTCAATATTTTCTAACCTAAAGTTTATAAAATAACCCACTTTTAATTTT
TCAGGATTGTCAAGGTGACTTGTTAAAGTCGATCAAGTCCAAAGAGATAA
ATGTTCTATTTCTCGATGAATGGGCAATCGACGAAGAATTTATCAGCAGT
CTTCCTTCATCAGTTACCACTGTATGGATAGCACCGAACGTAGCAAGTCA
ATTCAACAATTTTCAAGAACGACTCCAAAAAGAAGGATTTCAGCTCCTTA
AACTATGCCTCAATCTTAGAAACAGTAAGGAGATTGTCAAAGCATCGAAA
GAGCTAGCTGAGGAAACGCATTATCGATATCCGGAGGGTCTCAAAATGCC
GCCTGAGAATTTCCCACGTGGTCAAACACCTGTAGTTGTCAAGGATGTTG
AAGTTGCGTTGGCGCTAGCTCTAGATACGAACCATGATGGCGGAATTCTT
GTGGCTGTTGGTGATGGAAGCTTCGAGGATGACATCGAGACAATATCTTC
GTACACTGTGTGTGGTCAAGTCATGCGTTACCAGAGAGGCAACATAACCT
TCCATGAAAATTGTGATCCGTATCGATTTTTGAAAACAAGAGGCGCCATT
TTGGTTACAGATCATTTCTTTATCACCGGTTTTGAATATCCAACCATTAT
CTATATCAAAAAAGATGCAGTACCTATTCAAATTTTTGTCGAAGAGCACG
AGTGTAACCTTTATCTACGCTGCACAACGCAATTGATCATTGTCGACAAA
TGCAAACAAGAAGCGTCAACTGAGATGCAGCAATTGTCGAAGATTTTTAA
TAAATATGTTGGTACATTCGACTGGTGTCCGTTAGCGTCTGTTCAAAAGG
TTGTAGACGTGCCTAAAGAATTAGTTGAAGAACGGGAGATATACAAGCAT
GCAATTGAGGAAAACTGGGGCAATAACAACACTGAGGTAGGTGTCATGTC
GAGTATCAGAAATGAACACCCTCATGGCCTTTTTGGTTTCATGCTTCGTT
GTTTCAAGCTTCTTTTACCAGCGCTTGAAGACAACGAGGATGAAAATGCA
AGAATCATAAAGAAATGCTATGCACCTGGTGGGTTAGAAGAGCTTTATTA
TCGTTGTTTTAACAATTATGCGACAGATCCGACAGTATGTACGATTTTTA
TGGAAAGAATCGTTGAATTGTTGGAACTGGTCATGGCCGTTTGTAAATAT
GTTGGTGAAATTGATGATTAATAAAATCTTCAAAAATACGAAAAAGGAGG
AACTTCATTGACTGGCTAATTTTTACGCTGTACCTTATTGTACCCATTTG
TTAATATTTTTCAATTTTAAAAATAGTTGTATTTCCATTTGTTGTGCGCG
CTTTTGTGATAATTGCGCCAATTCGTAATATGTACCTGCGCAAATTTGTA
AAAATTGTTTCGCTATTTTATAATGCCTACGTGCAAATTTGTGATAACCG
TTGCGCTTTCGACTGCGCTTTTTTTGTAATTTCCGACTGCGCAGAAATGT
AATACTACTTCCCTGATTTGGATTTTTTTTAAACATAGAAGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001336XLOC_001336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002497-exon-sc0000020-1575043694:296748..297991TCONS_00002497-exon-sc0000020-1575043694:296748..297991Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1575043694:296063..296488TCONS_00002497-exon-sc0000020-1575043694:296063..296488Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1575043694:286597..288087TCONS_00002497-exon-sc0000020-1575043694:286597..288087Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1510915933:296748..297991TCONS_00002497-exon-sc0000020-1510915933:296748..297991Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1510915933:296063..296488TCONS_00002497-exon-sc0000020-1510915933:296063..296488Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1510915933:286597..288087TCONS_00002497-exon-sc0000020-1510915933:286597..288087Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1491911889:296748..297991TCONS_00002497-exon-sc0000020-1491911889:296748..297991Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1491911889:296063..296488TCONS_00002497-exon-sc0000020-1491911889:296063..296488Clytia hemisphaericaexon
TCONS_00002497-exon-sc0000020-1491911889:286597..288087TCONS_00002497-exon-sc0000020-1491911889:286597..288087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:286597..297991 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.468786	0.326583	0	0	0.051226	0	0.0289297	0	0.062716	0	0.0160072	4.43084	2.85956	2.35338	1.68514	1.55683	1.41605	0.885329	1.84229	1.31436	3.02336	2.00157	0.588348	3.13715	2.40123	0.923924	0	0.133388	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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