TCONS_00002492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002492
Unique NameTCONS_00002492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002492 ID=TCONS_00002492|Name=TCONS_00002492|organism=Clytia hemisphaerica|type=transcript|length=1362bp
AGAGAATAAACGAATCTATTGACTCATTGTGGAGGCAATCTTTTGTtgca
aattttattgaattggtagtaaaaTTGCTACATAAACAAATTTATACATA
CATATAAAAGGATGTGAAACTAATTaaaaaacttgtagtaaaaatcTGAT
AAGATCAAATACTATTAATTCTCCAATATATGGCACAGTGTAATATCAAA
GTTGACTTATGGCCACACACATGTTGGAAGGGTTTAAAGAGAAAATGGTT
CTTTTTATACTGATATTTTTATGTTCACTTTTACAAGCAAATTGCTACAA
TATCAATGACGgCATTCGTCTATCTCGAGGACTTCAAATAGATGAAATCT
CGCTTTTAGCACCAGCGTGGTATGTCTCTTTAGACATTCGACCTTACGGA
AACATCCCTTATTGGTCAAATGTTATTCACTTTACGNTTTAGACATTCGA
CCTTACGGAAATATCCCTTATTGGTCAAATGTTATTCACTTTACGGCTGA
CGGTACAAATATCAACACCCATGGCAGCCGTGTTCCTGCAATATTCTTCA
AAGGAAAAAGCCGGAAACTTCATATTTGTAATCCGGTGAATAGTGACAGA
AATTATTGCTTTAATTCTGAGCCTCTGATTTTGAACCAGTATACAAAAGT
TGAAATTAAACAACATCAATTGAGTGATGGGAAATTCAGACTTGAAATCA
AAATTGGTGGAGAAAGTGTCCATTCAGTGATTAATGATAAAGCCAGATTT
TTTGGTAATGTTAAAGTTTATCGATCAGATCCATGGTATCCGACAGCTAA
TGCATTGATCAAGAATTTGGTTTATGGTAATCTCCCCTATGAATTCAAGC
TCGCTGGTAAAAAGCAGATCAATACGATTCCAAGATACCACGAAGTTTAC
CAAGTCTCCTTCGACATCAAACCTGAAGCCCAAGCAACTATACCCAACAA
TTGGCGAAGTATTATTCGTTTTTCTATCAAAGGTAACAAAAAGGTGTACG
GATCCCGTGTTCCAGCTATCTTTTTCCACATAGGTGATCATCGACTTCAT
ATCTGCTCAGCTGTAAGCAACAACCAGAATTATTGTGTTAATACTCCGCA
ATCTTTACCAACAAACCGGTTCACAACAATCAAAATTATACAAAACTATA
ATGAAGATGGAGCTCTTATTTATCGAGTTTTTGTAGATGGCGTACAACTG
GTAGAGGTGGTAAACACACACCCTCGACGATTCAAAGATGTGAAAGTACA
TTTAACAGACCCTTATTTTAAATCTGCAAATGCAACTATTAAGAATCTAA
TCATCAAATCTGATTTAGGAGatACCATCATCACGCCAAAGAAAGATTAC
GAGATGACTCNN
Run BLAST on NCBI

transcript from alignment at sc0000020:209936..215118-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002492 ID=TCONS_00002492|Name=TCONS_00002492|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at sc0000020:209936..215118- (Clytia hemisphaerica)
AGAGAATAAACGAATCTATTGACTCATTGTGGAGGCAATCTTTTGTTGCA
AATTTTATTGAATTGGTAGTAAAATTGCTACATAAACAAATTTATACATA
CATATAAAAGGATGTGAAACTAATTAAAAAACTTGTAGTAAAAATCTGAT
AAGATCAAATACTATTAATTCTCCAATATATGGCACAGTGTAATATCAAA
GTTGACTTATGGCCACACATGTTGGAAGGGTTTGAAGAGAAGATGGTTCT
TTTTGTACTGATATTTTTATGTTCACTTTTACAANCTGTGCTTGTAGTAA
AAATCTGATAAGATAAAATACTATTAATTCTCCAATATATATGGCACAGT
GTAATATCAAAGTTGACTTATGGCCACACATGTTGGAAGGGTTTAAAGAG
AAAATGGTTCTTTTTATACTGATATTTTTATGTTCACTTTTACAAGCAAA
TTGCTACAATATCAATGACGGTGAGTCTAATTCTTTTATATACAACCCTG
TCTCAGTGTTACGGAGCAGTTGAGTCGTGGTGGCTCGAACAATAAAACTG
GGGAGGCAATTATAGAAGATTTTGATTTTTTGGCGCTAATAATAGTAGAT
TTCTTTGTAAAAGTTACGCGAACGAACCGACCACGAAAATATTTGGGTAC
TTTCTCTCTTTGGTCGTAAACTGCCAATTTTAATGTGTAAGAAAACAAAC
CGCGACTAAATTTAGCATGAAAATCTCTGCTGCCTGAGAAACCTTACAGA
AAAATGAAAAATGGTAACCCGAAGGTTCCAGATAAATTTTCCAGTTAAAA
TTTTCCCGACCTTCAGAGCTTTAGCGTGTCGAAGAAAGTTTCTACATCGA
GTACCAGATAACCACACTACTGATACGGAGGGCCGTTTGACCAGAAGTAT
GGTGGAAAAACGCTTAAACCAGAGGAATGTAAAGAGATGGAAAAACAGTT
TCTTGAAAACAATCAAAAAGCGGCTCGCCTTATACTAGGTCCCTTGCCCT
TAAGGGAGTTTATGTCGATTTAATAGGTTTCTTTTGTTGTCGCTTTAAGA
AATATACATAATTAGCATGTCGTGGCAAAATTCTTTTGTTTCAAGCTTGA
TTATGCGTAAAATTTTAGGGCATATATTTTGGGTACATCTTTCCTATACG
AAAAGGTACTTATATCTTCTTGCTCAGAATTTCCTAGCGATTCTACTGAT
ATAACTGCATCATGACCGCACTATTATATGGAAAGCTAGAGCTCGAGAAA
ATTATAACTTCATCTTTATTTTACGCGATTTCTGACAGAAATCAATTTAA
TATCATTGCGTTAAGAAATCTCTTTTGCTATATTTTGGTAAAAAAATTGC
TCCTTTATTCATAAAAGTTGAACTAGTAATCGGCGAAAAAGGAAACCAAA
TTAATTTTTATCGTCAAATCATCGTCTGATGGCGAGCCAGTGAACTGTTA
TCAGATAGAATAATGTCTCACTTTGGCTACTTCATCATCTATTCAGATTC
CCTTTGTTACAAGTGATTATTGGTCGTAAAAACAGTTTCTCAAAATCTGA
TGCGTGGATAGAAATCTCTGTATAAGGGTATGTTTGCACGGTATTTTTTC
TCAGTTACGAAATTTTTAGTTTTGGAAAACGATTGATACTTACAAATCTA
TTTTAGCTTATAATCTGGAATTTTAGGAGCTGAAATTTAGTGATTCCATT
GATTTTAACTCCTAAAATTAAAAAATCAAATTTGGTCTTTACGGAAAGAA
TAACTAATTTAGGTGAAAACTTGACACCCAAATTCCTTTTCTTAGAAGTG
CGTTTTCAAATAGTTTTCAACACTTGTGAATCTATAAAATGAGCTGATTT
CAAATATGTAATTCTTATTTGCATCGAGGGGACCGAAATGCCTGAAATTT
CCAGTTGAAAATAATCAAATTATGTGCATAAATTTTTAAGAATTCAAAAG
AATCCAATCAAGCATGAGAAAATATGCAATTAAAATACGATAAGAACAAA
GAAATGACATTATCATTGCACACGTGTAATTGAATTCCCATTGCAACTAA
GGGACCCCTTACAGACACCCTTTATTTTAAGTAAAAAAGCATGAATTTAT
TCTATTTGATAATAATTCTATGGGCAAGTCTTTTCTGGACTTTCATTTAA
TGACCCAATCAACTTTTTTACAATAGAATTTTCAATAGAAGTGATCGTTG
AACTTTGAGTAATCAGAAAAGCTGTTTTTCCATCTCTTTACATTCCTCTG
CTCTAACAGCCTTTGTTATCCTCGAATAAAAATTTTCGTGACGCCTTTTG
CGTCTCCACAGCATATAGAAGTTCTTTAGTAAAAAAGAAGAAAAGCTATC
GATTTGCTCCCTTACTTTTCTCTCATAAAATCCCGGTTTCTTCATTTGCG
TCCCCCACCTTGGTCAAACCTAATGGTTTAAGCAAAAGATATTCGTTACT
TTGACTATAATTAAACAGAACCTTTTGATATTTTAAATTATGTAGTATCG
GAATCAACGCATGAAACTTCAAGTATTGCAAAGAAAATGAAATAGCCGTA
ATTACGGCTGCAAACTCCGGTANATATTCGTTACTTTGACTATAATGAAA
CAGAACCTTTTGATATTTTAAATTATGTAGTATCGGAATCAACGCATGAA
ACTTCAAGTATTGCAAAGAAAATGAAATAGCCGTAATTACGGCTGCAAAC
TCCGGTAATTTTCATTGGTCAGCCTTTCTTAATATATCTAACATAAAATT
TAGTATAATTGAGTATATCCTAGTAAGTGCGAGCGCAAACACAAACCAAA
TCGGGAAATCAAACTGGAAAGATCAGGAAATCGAACCCNCGAGCGCAAAC
GCAAAACAAATCGGGAAATCAAACTGGAAAGATCAAGAAATCGAACCCAA
CTTTCGCGATTGATCGGATTTACACACAATTACAAATGAAAAATACTAAT
TTTAAGAAACTCCTTAACCGGAGTTTAAAAAACCGTTTCTTTAATCTTCA
TGTACGGTATCTACGTTCATGTTTTTCATAAACGAAGATATTTTTTGGAA
TAATTTGATCGCGCATTGTATTGGACAAGTGAACTTTATATGAAATTCCT
TTGTTTTTTTAGGCATTCGTCTATCTCGAGGACTTCAAATAGATGAAATC
TCGCTTTTAGCACCAGCGTGGTATGTCTCTTTAGACATTCGACCTTACGG
AAACATCCCTTATTGGTCAAATGTTATTCACTTTACGNTTTAGACATTCG
ACCTTACGGAAATATCCCTTATTGGTCAAATGTTATTCACTTTACGGCTG
ACGGTACAAATATCAACACCCATGGCAGCCGTGTTCCTGCAATATTCTTC
AAAGGAAAAAGCCGGAAACTTCATATTTGTAATCCGGTGAATAGTGACAG
AAATTATTGCTTTAATTCTGAGCCTCTGATTTTGAACCAGTATACAAAAG
TTGAAATTAAACAACATCAATTGAGTGATGGGAAATTCAGACTTGAAATC
AAAATTGGTGGAGAAAGTGTCCATTCAGTGATTAATGATAAAGCCAGATT
TTTTGGTAATGTTAAAGTTTATCGATCAGATCCATGGTATCCGACAGCTA
ATGCATTGATCAAGAATTTGGTTTATGGTAATCTCCCCTATGGTGAGTAA
TCATTTCTGGTGTCTACGCGCTCTCCTTATTTTATACTCTTGTGGCGTTG
TTAGCAGATCAATAGCTTCTAATTAACTCAGCAATATAGGTTCTAGGTAT
TTTTTATAATCGAGTCAGCTATTTTCTTTCTATTATCTTTCTACTTATCC
AGAAAGAGATTATCTACACATGTTTTGTACCTTGATGCTTACTCAAGGTA
CTGCACCTGATCTCAGACTTCGGTCTTCAGCTTATCACTTCCTTTTGTGT
CTTGTGCATTCCTTTTGTTTTTTTACTTTTTCTATTTCTTTCTTCCTTAA
TGTATATTGGGTTTTTATTACAGATTGTCATGGTTAGTCGCTAGTTTGTA
TCTTCTTCAGTGTATATAACTTCACTATGTTTCAATTTCTTCTCAACAGA
ATTCAAGCTCGCTGGTAAAAAGCAGATCAATACGATTCCAAGATACCACG
AAGTTTACCAAGTCTCCTTCGACATCAAACCTGAAGCCCAAGCAACTATA
CCCAACAATTGGCGAAGTATTATTCGTTTTTCTATCAAAGGTAACAAAAA
GGTGTACGGATCCCGTGTTCCAGCTATCTTTTTCCACATAGGTGATCATC
GACTTCATATCTGCTCAGCTGTAAGCAACAACCAGAATTATTGTGTTAAT
ACTCCGCAATCTTTACCAACAAACCGGTTCACAACAATCAAAATTATACA
AAACTATAATGAAGATGGAGCTCTTATTTATCGAGTTTTTGTAGATGGCG
TACAACTGGTAGAGGTGGTAAACACACACCCTCGACGATTCAAAGATGTG
AAAGTACATTTAACAGACCCTTATTTTAAATCTGCAAATGCAACTATTAA
GAATCTAATCATCAAATCTGATTTAGGAGGTAAGACTTTGATTATATAAG
ATTTTTAGATCTTTCCCAAATTATTTACACCGTGGACTCGATGCTCCACT
GAAATCTGATTGTAAGAGATGTATTGGCAAGTAAAACAAATTAATTCCTG
TATTTTATCACTTTTATGATGTAAACAAATTAACTGACTGAATAAAGGTA
GCACTTGAAACGTCTATAAGCAATTTGTTCCACTAAACTTTGAAGTGTTT
AAGAAATAAATAGTTTGGATAAATCAATCCTGTCTAATTTTTAAAGTCTG
TGACCAGTTTGAACGTCGATATCTGCTAATTTGAGAGGAAAAGTAGGATT
TTGACCATTTCATGCAAACAACTTTGTCCGCTAATTTAAAGGTCCGCTGA
TTGAGTGTCCGTCTTTTGGAAACTACTTTATGAGGATTTGACTAGGAAAT
GGCCGGCGAAAATATAAATGTCCGCTAATCAGAGGTGTCTGCCTTTTAGA
GTGTCCGTTAATTGAAGGTTTTACTGTAACACATGTGTCATTGCTCAAAA
AAACCGACAGAAAAGTAGCAGAAACAGTCTCAATTTTTTGCTTCAATGCG
GGAAATATCGAATTAAGAGAGGGCACAATTTTGATTTTATAGATACCATC
ATCACGCCAAAGAAAGATTACGAGATGACTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001333XLOC_001333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002492-exon-sc0000020-1575043694:214901..215118TCONS_00002492-exon-sc0000020-1575043694:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:214649..214741TCONS_00002492-exon-sc0000020-1575043694:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:211477..212006TCONS_00002492-exon-sc0000020-1575043694:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:210590..211069TCONS_00002492-exon-sc0000020-1575043694:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:209936..209976TCONS_00002492-exon-sc0000020-1575043694:209936..209976Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:214901..215118TCONS_00002492-exon-sc0000020-1510915933:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:214649..214741TCONS_00002492-exon-sc0000020-1510915933:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:211477..212006TCONS_00002492-exon-sc0000020-1510915933:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:210590..211069TCONS_00002492-exon-sc0000020-1510915933:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:209936..209976TCONS_00002492-exon-sc0000020-1510915933:209936..209976Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:214901..215118TCONS_00002492-exon-sc0000020-1491911889:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:214649..214741TCONS_00002492-exon-sc0000020-1491911889:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:211477..212006TCONS_00002492-exon-sc0000020-1491911889:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:210590..211069TCONS_00002492-exon-sc0000020-1491911889:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:209936..209976TCONS_00002492-exon-sc0000020-1491911889:209936..209976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:209936..215118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.829	53.1095	27.362	21.8186	106.995	85.2232	78.5629	71.8113	39.3087	54.8889	64.9044	43.1484	1.14599	1.99771	0.0873609	0.0482032	33.2838	28.3327	0.523346	0.444961	182.102	155.729	18.1396	23.7478	18.7316	24.8237	77.6617	29.634	5.87418	7.78237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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