TCONS_00002492 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002492
Unique NameTCONS_00002492
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1362

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002492 ID=TCONS_00002492|Name=TCONS_00002492|organism=Clytia hemisphaerica|type=transcript|length=1362bp
AGAGAATAAACGAATCTATTGACTCATTGTGGAGGCAATCTTTTGTtgca
aattttattgaattggtagtaaaaTTGCTACATAAACAAATTTATACATA
CATATAAAAGGATGTGAAACTAATTaaaaaacttgtagtaaaaatcTGAT
AAGATCAAATACTATTAATTCTCCAATATATGGCACAGTGTAATATCAAA
GTTGACTTATGGCCACACACATGTTGGAAGGGTTTAAAGAGAAAATGGTT
CTTTTTATACTGATATTTTTATGTTCACTTTTACAAGCAAATTGCTACAA
TATCAATGACGgCATTCGTCTATCTCGAGGACTTCAAATAGATGAAATCT
CGCTTTTAGCACCAGCGTGGTATGTCTCTTTAGACATTCGACCTTACGGA
AACATCCCTTATTGGTCAAATGTTATTCACTTTACGNTTTAGACATTCGA
CCTTACGGAAATATCCCTTATTGGTCAAATGTTATTCACTTTACGGCTGA
CGGTACAAATATCAACACCCATGGCAGCCGTGTTCCTGCAATATTCTTCA
AAGGAAAAAGCCGGAAACTTCATATTTGTAATCCGGTGAATAGTGACAGA
AATTATTGCTTTAATTCTGAGCCTCTGATTTTGAACCAGTATACAAAAGT
TGAAATTAAACAACATCAATTGAGTGATGGGAAATTCAGACTTGAAATCA
AAATTGGTGGAGAAAGTGTCCATTCAGTGATTAATGATAAAGCCAGATTT
TTTGGTAATGTTAAAGTTTATCGATCAGATCCATGGTATCCGACAGCTAA
TGCATTGATCAAGAATTTGGTTTATGGTAATCTCCCCTATGAATTCAAGC
TCGCTGGTAAAAAGCAGATCAATACGATTCCAAGATACCACGAAGTTTAC
CAAGTCTCCTTCGACATCAAACCTGAAGCCCAAGCAACTATACCCAACAA
TTGGCGAAGTATTATTCGTTTTTCTATCAAAGGTAACAAAAAGGTGTACG
GATCCCGTGTTCCAGCTATCTTTTTCCACATAGGTGATCATCGACTTCAT
ATCTGCTCAGCTGTAAGCAACAACCAGAATTATTGTGTTAATACTCCGCA
ATCTTTACCAACAAACCGGTTCACAACAATCAAAATTATACAAAACTATA
ATGAAGATGGAGCTCTTATTTATCGAGTTTTTGTAGATGGCGTACAACTG
GTAGAGGTGGTAAACACACACCCTCGACGATTCAAAGATGTGAAAGTACA
TTTAACAGACCCTTATTTTAAATCTGCAAATGCAACTATTAAGAATCTAA
TCATCAAATCTGATTTAGGAGatACCATCATCACGCCAAAGAAAGATTAC
GAGATGACTCNN
Run BLAST on NCBI

transcript from alignment at sc0000020:209936..215118-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002492 ID=TCONS_00002492|Name=TCONS_00002492|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at sc0000020:209936..215118- (Clytia hemisphaerica)
AGAGAATAAACGAATCTATTGACTCATTGTGGAGGCAATCTTTTGTTGCA AATTTTATTGAATTGGTAGTAAAATTGCTACATAAACAAATTTATACATA CATATAAAAGGATGTGAAACTAATTAAAAAACTTGTAGTAAAAATCTGAT AAGATCAAATACTATTAATTCTCCAATATATGGCACAGTGTAATATCAAA GTTGACTTATGGCCACACATGTTGGAAGGGTTTGAAGAGAAGATGGTTCT TTTTGTACTGATATTTTTATGTTCACTTTTACAANCTGTGCTTGTAGTAA AAATCTGATAAGATAAAATACTATTAATTCTCCAATATATATGGCACAGT GTAATATCAAAGTTGACTTATGGCCACACATGTTGGAAGGGTTTAAAGAG AAAATGGTTCTTTTTATACTGATATTTTTATGTTCACTTTTACAAGCAAA TTGCTACAATATCAATGACGGTGAGTCTAATTCTTTTATATACAACCCTG TCTCAGTGTTACGGAGCAGTTGAGTCGTGGTGGCTCGAACAATAAAACTG GGGAGGCAATTATAGAAGATTTTGATTTTTTGGCGCTAATAATAGTAGAT TTCTTTGTAAAAGTTACGCGAACGAACCGACCACGAAAATATTTGGGTAC TTTCTCTCTTTGGTCGTAAACTGCCAATTTTAATGTGTAAGAAAACAAAC CGCGACTAAATTTAGCATGAAAATCTCTGCTGCCTGAGAAACCTTACAGA AAAATGAAAAATGGTAACCCGAAGGTTCCAGATAAATTTTCCAGTTAAAA TTTTCCCGACCTTCAGAGCTTTAGCGTGTCGAAGAAAGTTTCTACATCGA GTACCAGATAACCACACTACTGATACGGAGGGCCGTTTGACCAGAAGTAT GGTGGAAAAACGCTTAAACCAGAGGAATGTAAAGAGATGGAAAAACAGTT TCTTGAAAACAATCAAAAAGCGGCTCGCCTTATACTAGGTCCCTTGCCCT TAAGGGAGTTTATGTCGATTTAATAGGTTTCTTTTGTTGTCGCTTTAAGA AATATACATAATTAGCATGTCGTGGCAAAATTCTTTTGTTTCAAGCTTGA TTATGCGTAAAATTTTAGGGCATATATTTTGGGTACATCTTTCCTATACG AAAAGGTACTTATATCTTCTTGCTCAGAATTTCCTAGCGATTCTACTGAT ATAACTGCATCATGACCGCACTATTATATGGAAAGCTAGAGCTCGAGAAA ATTATAACTTCATCTTTATTTTACGCGATTTCTGACAGAAATCAATTTAA TATCATTGCGTTAAGAAATCTCTTTTGCTATATTTTGGTAAAAAAATTGC TCCTTTATTCATAAAAGTTGAACTAGTAATCGGCGAAAAAGGAAACCAAA TTAATTTTTATCGTCAAATCATCGTCTGATGGCGAGCCAGTGAACTGTTA TCAGATAGAATAATGTCTCACTTTGGCTACTTCATCATCTATTCAGATTC CCTTTGTTACAAGTGATTATTGGTCGTAAAAACAGTTTCTCAAAATCTGA TGCGTGGATAGAAATCTCTGTATAAGGGTATGTTTGCACGGTATTTTTTC TCAGTTACGAAATTTTTAGTTTTGGAAAACGATTGATACTTACAAATCTA TTTTAGCTTATAATCTGGAATTTTAGGAGCTGAAATTTAGTGATTCCATT GATTTTAACTCCTAAAATTAAAAAATCAAATTTGGTCTTTACGGAAAGAA TAACTAATTTAGGTGAAAACTTGACACCCAAATTCCTTTTCTTAGAAGTG CGTTTTCAAATAGTTTTCAACACTTGTGAATCTATAAAATGAGCTGATTT CAAATATGTAATTCTTATTTGCATCGAGGGGACCGAAATGCCTGAAATTT CCAGTTGAAAATAATCAAATTATGTGCATAAATTTTTAAGAATTCAAAAG AATCCAATCAAGCATGAGAAAATATGCAATTAAAATACGATAAGAACAAA GAAATGACATTATCATTGCACACGTGTAATTGAATTCCCATTGCAACTAA GGGACCCCTTACAGACACCCTTTATTTTAAGTAAAAAAGCATGAATTTAT TCTATTTGATAATAATTCTATGGGCAAGTCTTTTCTGGACTTTCATTTAA TGACCCAATCAACTTTTTTACAATAGAATTTTCAATAGAAGTGATCGTTG AACTTTGAGTAATCAGAAAAGCTGTTTTTCCATCTCTTTACATTCCTCTG CTCTAACAGCCTTTGTTATCCTCGAATAAAAATTTTCGTGACGCCTTTTG CGTCTCCACAGCATATAGAAGTTCTTTAGTAAAAAAGAAGAAAAGCTATC GATTTGCTCCCTTACTTTTCTCTCATAAAATCCCGGTTTCTTCATTTGCG TCCCCCACCTTGGTCAAACCTAATGGTTTAAGCAAAAGATATTCGTTACT TTGACTATAATTAAACAGAACCTTTTGATATTTTAAATTATGTAGTATCG GAATCAACGCATGAAACTTCAAGTATTGCAAAGAAAATGAAATAGCCGTA ATTACGGCTGCAAACTCCGGTANATATTCGTTACTTTGACTATAATGAAA CAGAACCTTTTGATATTTTAAATTATGTAGTATCGGAATCAACGCATGAA ACTTCAAGTATTGCAAAGAAAATGAAATAGCCGTAATTACGGCTGCAAAC TCCGGTAATTTTCATTGGTCAGCCTTTCTTAATATATCTAACATAAAATT TAGTATAATTGAGTATATCCTAGTAAGTGCGAGCGCAAACACAAACCAAA TCGGGAAATCAAACTGGAAAGATCAGGAAATCGAACCCNCGAGCGCAAAC GCAAAACAAATCGGGAAATCAAACTGGAAAGATCAAGAAATCGAACCCAA CTTTCGCGATTGATCGGATTTACACACAATTACAAATGAAAAATACTAAT TTTAAGAAACTCCTTAACCGGAGTTTAAAAAACCGTTTCTTTAATCTTCA TGTACGGTATCTACGTTCATGTTTTTCATAAACGAAGATATTTTTTGGAA TAATTTGATCGCGCATTGTATTGGACAAGTGAACTTTATATGAAATTCCT TTGTTTTTTTAGGCATTCGTCTATCTCGAGGACTTCAAATAGATGAAATC TCGCTTTTAGCACCAGCGTGGTATGTCTCTTTAGACATTCGACCTTACGG AAACATCCCTTATTGGTCAAATGTTATTCACTTTACGNTTTAGACATTCG ACCTTACGGAAATATCCCTTATTGGTCAAATGTTATTCACTTTACGGCTG ACGGTACAAATATCAACACCCATGGCAGCCGTGTTCCTGCAATATTCTTC AAAGGAAAAAGCCGGAAACTTCATATTTGTAATCCGGTGAATAGTGACAG AAATTATTGCTTTAATTCTGAGCCTCTGATTTTGAACCAGTATACAAAAG TTGAAATTAAACAACATCAATTGAGTGATGGGAAATTCAGACTTGAAATC AAAATTGGTGGAGAAAGTGTCCATTCAGTGATTAATGATAAAGCCAGATT TTTTGGTAATGTTAAAGTTTATCGATCAGATCCATGGTATCCGACAGCTA ATGCATTGATCAAGAATTTGGTTTATGGTAATCTCCCCTATGGTGAGTAA TCATTTCTGGTGTCTACGCGCTCTCCTTATTTTATACTCTTGTGGCGTTG TTAGCAGATCAATAGCTTCTAATTAACTCAGCAATATAGGTTCTAGGTAT TTTTTATAATCGAGTCAGCTATTTTCTTTCTATTATCTTTCTACTTATCC AGAAAGAGATTATCTACACATGTTTTGTACCTTGATGCTTACTCAAGGTA CTGCACCTGATCTCAGACTTCGGTCTTCAGCTTATCACTTCCTTTTGTGT CTTGTGCATTCCTTTTGTTTTTTTACTTTTTCTATTTCTTTCTTCCTTAA TGTATATTGGGTTTTTATTACAGATTGTCATGGTTAGTCGCTAGTTTGTA TCTTCTTCAGTGTATATAACTTCACTATGTTTCAATTTCTTCTCAACAGA ATTCAAGCTCGCTGGTAAAAAGCAGATCAATACGATTCCAAGATACCACG AAGTTTACCAAGTCTCCTTCGACATCAAACCTGAAGCCCAAGCAACTATA CCCAACAATTGGCGAAGTATTATTCGTTTTTCTATCAAAGGTAACAAAAA GGTGTACGGATCCCGTGTTCCAGCTATCTTTTTCCACATAGGTGATCATC GACTTCATATCTGCTCAGCTGTAAGCAACAACCAGAATTATTGTGTTAAT ACTCCGCAATCTTTACCAACAAACCGGTTCACAACAATCAAAATTATACA AAACTATAATGAAGATGGAGCTCTTATTTATCGAGTTTTTGTAGATGGCG TACAACTGGTAGAGGTGGTAAACACACACCCTCGACGATTCAAAGATGTG AAAGTACATTTAACAGACCCTTATTTTAAATCTGCAAATGCAACTATTAA GAATCTAATCATCAAATCTGATTTAGGAGGTAAGACTTTGATTATATAAG ATTTTTAGATCTTTCCCAAATTATTTACACCGTGGACTCGATGCTCCACT GAAATCTGATTGTAAGAGATGTATTGGCAAGTAAAACAAATTAATTCCTG TATTTTATCACTTTTATGATGTAAACAAATTAACTGACTGAATAAAGGTA GCACTTGAAACGTCTATAAGCAATTTGTTCCACTAAACTTTGAAGTGTTT AAGAAATAAATAGTTTGGATAAATCAATCCTGTCTAATTTTTAAAGTCTG TGACCAGTTTGAACGTCGATATCTGCTAATTTGAGAGGAAAAGTAGGATT TTGACCATTTCATGCAAACAACTTTGTCCGCTAATTTAAAGGTCCGCTGA TTGAGTGTCCGTCTTTTGGAAACTACTTTATGAGGATTTGACTAGGAAAT GGCCGGCGAAAATATAAATGTCCGCTAATCAGAGGTGTCTGCCTTTTAGA GTGTCCGTTAATTGAAGGTTTTACTGTAACACATGTGTCATTGCTCAAAA AAACCGACAGAAAAGTAGCAGAAACAGTCTCAATTTTTTGCTTCAATGCG GGAAATATCGAATTAAGAGAGGGCACAATTTTGATTTTATAGATACCATC ATCACGCCAAAGAAAGATTACGAGATGACTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001333XLOC_001333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002492-exon-sc0000020-1575043694:214901..215118TCONS_00002492-exon-sc0000020-1575043694:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:214649..214741TCONS_00002492-exon-sc0000020-1575043694:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:211477..212006TCONS_00002492-exon-sc0000020-1575043694:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:210590..211069TCONS_00002492-exon-sc0000020-1575043694:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1575043694:209936..209976TCONS_00002492-exon-sc0000020-1575043694:209936..209976Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:214901..215118TCONS_00002492-exon-sc0000020-1510915933:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:214649..214741TCONS_00002492-exon-sc0000020-1510915933:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:211477..212006TCONS_00002492-exon-sc0000020-1510915933:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:210590..211069TCONS_00002492-exon-sc0000020-1510915933:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1510915933:209936..209976TCONS_00002492-exon-sc0000020-1510915933:209936..209976Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:214901..215118TCONS_00002492-exon-sc0000020-1491911889:214901..215118Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:214649..214741TCONS_00002492-exon-sc0000020-1491911889:214649..214741Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:211477..212006TCONS_00002492-exon-sc0000020-1491911889:211477..212006Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:210590..211069TCONS_00002492-exon-sc0000020-1491911889:210590..211069Clytia hemisphaericaexon
TCONS_00002492-exon-sc0000020-1491911889:209936..209976TCONS_00002492-exon-sc0000020-1491911889:209936..209976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:209936..215118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
46.829 53.1095 27.362 21.8186 106.995 85.2232 78.5629 71.8113 39.3087 54.8889 64.9044 43.1484 1.14599 1.99771 0.0873609 0.0482032 33.2838 28.3327 0.523346 0.444961 182.102 155.729 18.1396 23.7478 18.7316 24.8237 77.6617 29.634 5.87418 7.78237
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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