TCONS_00002491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002491
Unique NameTCONS_00002491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002491 ID=TCONS_00002491|Name=TCONS_00002491|organism=Clytia hemisphaerica|type=transcript|length=3580bp
GGAATTCGTACGGTTGACAGCGTGCTCAGCATGAAGTACACGTGAGCCAA
AAGGATATACTTATGACAAATGCAACGAAGAGTTATCCAGTGATATTGAC
TGCAGTCAATACCAATCTTTATCTGGGTTTCGTTCAGTGGAAGGTGTTTG
TAACAATCTTCAACACCCAACATGGGGAGCAGCTCATACTAAGCTCAGAC
GGGTAGTTGATCCCGAGTATGCATCAGACGGCAAGTTTGACACGCCACGT
GGTTTCCCTAACACGAACCCAGTCCTTCCACCACCAAACGCAGTTACGCA
ACAACTGTTTGACGTTGAAAACCAAAACAGTGGAAGTATTAAGAAAATTA
CAACTTTGTTCATGACTTTTGGGCAGTTTCTGGATCATGATTTTACAGAG
ACACCTCATCAATATTGCAAACAAAAaTGCGATGTAAGCAACTCATGGCA
ATATCCATGTTTCCCATTGCTGTTCGACACCACAACCAATAGCTGTTCAG
CCAATGGTCGATCAACAGCTGTATGTAGCAACAGAGCTTATCTATCACCA
AGACAACAAATGAATGCACTCTCTGCTTTCGTTGATGGATCACAGATCTA
TGATAATCGGAAGGCTCATTTTGAATTGTTGAGGGACAGTACAGaCGGTT
TAATGAAGATCACAAAATCTGATGGTTTATTACCTGTTGAGTTTGCTCAA
GGTGAGAATGGATGCTTCACAGTTGGAGGTTGTTCGTTAGCCGGTGATTT
TAGAGTCGATGAAAACATTGCTCTTCACACCATGCATACATTATGGATTC
GGAACCACAACAATATTGCTCGCCAGTTGAAATCACTAAACCCAACATGG
AGCCATGATAAGCTTTTCAATAATGCTCGAAAAATCAATAGTGCTTTATG
GCAACACATCACTTATAATGAATATCTTCCAGTCCTGGCAAGCATACCAG
CTTACCAAGGTTATAAAACTGACGTGGATCCATCAATCACCAATGTCTTT
GCATCAGCTGCTTTCAGATATGGTCATTCGCTAGTACCAAATCAATTTGA
GCAGTTGAATGTTGGTTTCAATAGGGAGAATGATCCAGTTCCTTTACAGG
ATGCTTTCTTCAATCGTCAATTGATCAATGACCGAGGAATTGAGCAAACC
ATGAGAGGATTGGTTGGCAATATGTCAAACAACGTCGATGACAAGTTCTC
CCAAGCTATTGCCAGAAAGCTGTTCCTTCCTATTGGAGCTGTTGGTTATT
TAGATTTGACTGCATTGAATATTCAACGTGGTCGAGACCATGGATTACCA
GGATATAATACTTACAGGAAATACTGTGGCCTGCCAGTCGCTGAAAATTG
GGCGGATATCGATTCTATCATGGTACCAGGCGCTGCTGCCAAGTTTGAAA
AAGTCTACAATCATCCTGATGATATAGATATTTTTGCTGGAGGAATATCT
GAGAAGCACGTCACAAACTTGGAGATCGGTCCAACGTTTAATTGCTTGAT
TGGCCAACAATTCAAAGCAACTAGAGATGGTGATCGCTTTTATTATGAGA
ACCCTGGTGTCTTCACAGCACAACAGCTAATAGCAATCAAAAAGGTTACA
TTGTCTACAATCCTCTGTTTGAATCTGAATTCGCCAGGAAAACCAGCAGG
TCTAGTATCAATTCAGCCAGATGCATTCCACACACCAGATGCCAATCAGA
ACACCAGAAAAACATGCAGCGGAAATGCCATCCCCAAACTTGATCTTACA
GCTTGGTCAGAAGAGCAAGTTGTAGTACCAATACAACCAATACCTGTTAA
AGACCAAGAATCTAACCAAGATAACCATATTGGTAATGTCTTCACAGAAA
ATCATGATAACGATGTTGGTGGATCAATCAATTCGCATGAATCCGAAGCT
TTGTCATCCATCAATGACGCGTTAACAAATCTTCAGGACGTTCTCATTAA
AATGAAACAACAATTCCACAATGATGACCTGCTGAACAACCTTGATGAGG
ACATTGTTGAAGAGACCCTTCATCAATCCAAGAAGAATATTCACCAAAGA
TTAAAGGATTACATTCACTCAAAGAAGAACGTTGAAAGTGACATTGAAGG
TGAAAGTGTTCATGTCAAGGACGATAACCAGTAGAACTCCTTTATATAGT
CACACTCATATAGTCACGAGGATAATAATACTCTACAGTGCACGCACTAG
TATTTGGCttctaccttaagtggattaattttcgcgtggacaaaatttcg
cgaatggaagattgaaaattttcgcgtggactaaatttcgcgatttggcc
tgttttttacctaatttctttcattttcctaggggttttgacaaaaattg
caattctaaaaatttcgcgtggacaaaatttcgcgaatggaagattgaaa
attttcgcgtagactaaatttcgcgatttggcctgttttttacctaattt
ctttcattttcctaggggttttgacaaaaattgcaattctaaaaatttcg
cgtggacaaaatttcgcgaaaatggccaaaatacgcgaaaatcgcgaaaa
ttaatccacgcgaaaattaatccacttaaggtatgtcGAACAGTCACTAA
TGAAgtgtcaaaaattattttatattttgtcgATTGTAATCAATATAgcc
cttttaaaattttatatcgTGATATATCGTGATCACTTTGCAGTTAGGTG
CTTATTTTTTCTACTGCTGAGACCGGCATATCTGGGGCCAATACATTAGT
TCGTGTATAGTTTAATGAATAGTGTTTTTTTCAGGCtcgtttttcttcat
tttgctTTAAAATACAAGGAATATAATAATATATAATTCATGTTCATTGA
TAAagtaaagtttttctttattttccttgaaaagTAACAAGATTTTACTG
TAGTGATTACGAAATTTTTCCGAAATACGCCTCATACAGGCGAGTCCTGG
GATAATCTACTCATCGATCAAAATAGTGATTCGACATGTGGACGAGGTTG
TGAAGTTTCTTGTTCATTTTCCATGAAAACAACTCATGTTCAATTTGTCT
GAGAATTATTTACTTACATgtgcttttgaaaataaaatgtagcgttttct
ttattttccttgaaaaatacaaagaatacaCTTAATCTTCTTTGATTCGT
TAATGTTCTTccttttccttgaaaaatacaaagaatacaCTTAATCTTCT
TTGATTCGTTAAGTAAGATTGTTCTTccttttccttgaaaaatacaagat
tACACTTCATGTGCTTTTGAGAATAAATggtaaagtttttcttttttttc
ttgaaaattgaaatagaaTAATTCATGCTTTACTACATTTTCCTTGAAAT
ATACAAAGGAAACACTCCATGGGCTTTTAAAATAGATTGTAAACGtcttt
ctttattttccttgaaaaattaCATAGAATAAATAAACTTCATGTTCAGt
cagaaaaaaaagtaaattgttacctcattttccttgaaaaatacaaataa
aacaCTTCATGTATTTCATTGGTTAATAAGGTTaaacttcattttccttg
aaaaatacaaagaacGTTCTGTCAGATAAA
Run BLAST on NCBI

transcript from alignment at sc0000020:202770..209325-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002491 ID=TCONS_00002491|Name=TCONS_00002491|organism=Clytia hemisphaerica|type=transcript|length=6556bp|location=Sequence derived from alignment at sc0000020:202770..209325- (Clytia hemisphaerica)
GGAATTCGTACGGTTGACAGCGTGCTCAGCATGAAGTACACGTGAGCCAA
AAGGTTGCGTTTTTTTCTATAATCCATCTATATATTTGACTTGAGATAAA
CATGCTGCGGGTTTACAATAGAACCTACATCATCATCTTATCATGCTGCG
GGTTTACCACTGATATGTTCTAATAGAAACCTTTCTCTAAATAGAACCTT
CAAAACAAGATCTTATCAGTCGTTTTCTCTAATTAAAATAGTTTATTTGA
TTAAATATGATAGTCCTTTTTTCATTAAACTGATAGTGATATTCGCAATA
TTGCTAACAACGAGTCAAACACCCGGCGCCCAAGGAGTAACTCACCGCCT
TAGCAATTCGACGAATCAGAATAAAAAAGTCATAAGTCCGTTTTTTGGAA
AATTGAGTTGTGACCATACCAATGCTTTACGCCCCATTTTCTATCGATTT
TTTTTATTTAAATCCATCAAAAACCAACCTAAAGTGGCCTAATTTAAGCT
TTTAGAAAAATAAGAAACTTTATTTTCAGGGTAAAAAAGCCTTAAGTCAC
ATCAGTTTAGAGCAAAAAAGCCAGCGTGGTAACAATTTTGGACTTAAGCA
TTTTTATTTTGATGCGACCACTTACTTGAAAAAGGCAGCGTCGAAGATGT
TCTAAAGGACAAGGAAAAATACTCTCCCTTCGCTTTATCGAAAGCATTTA
ATACTTTTGCTTGACAGATAAGAACTTTTTATTATTGACTCTCTGGTAAG
ACAAAACGCTGCAAAAGTATCTCACAAGAGCAGCCAACGGCTAGAAATTC
CAAATTATCTGTTCTGAATGGTAACTTTCTTTGGAAAAATGTATCTGTTT
TTTTCTTGTCAGACTCCTGGATAAATGTATCTATTCTTGAAAAAATTTAG
GTTCCTGGTCTAGACTTGGGACATCTAAAGTTTGCTGGAAAAGTATGCAG
ATTTTTCCAAATTTATCTCTTCTGGATTATCGGAACAGATGTTTTATATT
CCTTCCTAGAATTTTTAGAAGTGCTTGGAATATAGCTGGCTCCTGGATTT
TACTCCGAAATACCCTCTCCTTCAAAAAAAGAGCAGATATTTTGAAAAAT
TCCTCTGCTGGCTGCTCCTGATCTCAATTAGTTGAAGGGTTAGTGGCTTT
TTAAAATTCAGTCTCTGACCACAAATTTTCCTTACAGGATATACTTATGA
CAAATGCAACGAAGAGTTATCCAGTGATATTGACTGCAGTCAATACCAAT
CTTTATCTGGGTTTCGTTCAGTGGAAGGTGTTTGTAACAATCTTCAACAC
CCAACATGGGGAGCAGCTCATACTAAGCTCAGACGGGTAGTTGGTAAGTA
CTTTAAATCTTTAGTGTGTGGGGGGGGACTCCTCTAAGTGCTCTATTGAT
TAAGCTATCTAAACGTTTATTTACAAAACAATTTGACGTCAAAAGATGGA
GGCATTGTTGGCTTTGTCGAATTTGAAACCATTTTACCTATGGCAATTGA
ATGAAATTTGAATGGCCATCCACGTGTGTCACCGGCTTTGTTGGTCATCG
TTTGTTGGTCATCCATATGTTTTACACCTGGGGTCTTACAGTCCACGTGA
ATACACGCTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCGCAATGTTT
CTTAAAAACTCGGCCTTTTGAGCCTGAAATGTTTCTTTTACATGTTTCTA
AACTTTTTGACATAATAAACCTATTTTTCATGCAATAAGAAAAGAAAAGA
AAACAATTATTTTGATTGGACGGTTCTTGAAAAAAAAAAAGAATTAAAAA
ATGCTATTTTCTCATTCTGAGCCTCAGCATGTTTCTTAGATATTTCTTAG
TTTTTAGGCATTCTAAGCCTCATGTTTCTTAAAAGTATGTTTCTTAAAAA
AAAAAACATGTAGTTAGATTAAGTAGGCCTTGATGGTTCCTCAGTTCCTC
TAAGGTTTTCTAAAAATGTGTCCCTTGTATTCCCCTTGTATTGCACCTGA
GTTTCCTCATTTCAGATCCCGAGTATGCATCAGACGGCAAGTTTGACACG
CCACGTGGTTTCCCTAACACGAACCCAGTCCTTCCACCACCAAACGCAGT
TACGCAACAACTGTTTGACGTTGAAAACCAAAACAGTGGAAGTATTAAGA
AAATTACAACTTTGTTCATGACTTTTGGGCAGTTTCTGGATCATGATTTT
ACAGAGACACCTCATCAATATTGCAAACAAAAGTAAGCATCATTAAAATA
CACAAAAATCTCTTTCATCGTGAATATTACGAGTGTGGACAGGTAGACCT
TCATCATGGGGGGCTATGGCGGGTATGTGCCGCTCGACCTTTGGTGATGG
AACCCTTGGAAGGACTAAAACTGATAAAAGAAAAACCCGAATTTTCATAA
ATTATATTACCCTTATTGGTACATTTTGGACTTTTTTGCTTGGAATTTTG
GCTTTTGAGGGTCAAGAAATGTGATTTTAGCTGATTTTACAACCGTTAAG
GGGATTGGAATTAAATTTTGTGATTTTAAGACCCTTAGTGGGATTTTGAA
GATGACAAAAAGGCACCCTTAAGGGCGGCACATATCCGTACCCTCCTTTT
GCCTAAGGACCTTCATACCCTAGTAATCTACTCTTCTCTAAAAACCTTGC
ATTACCTCTGCCTATGTTACTGCTAGTCAACACTTAATTCTAGAGTGTAT
TATACGAGGGGAACCTCGACAAAAGTCTTTTTATTTGTTTCAATTCATCT
TTTCGCATATATAATTCTTATGACATAAACTGTGTAATATGAAAAATTTC
GTACTCAGAACGAGAAAATGTGGAATTATGCGACTGCCTGGGAAATCGAA
AAGTAGTAAAAGTACACATATACTGATAAAGTCTGATTTTTTTTCTCTCA
GATGCGATGTAAGCAACTCATGGCAATATCCATGTTTCCCATTGCTGTTC
GACACCACAACCAATAGCTGTTCAGCCAATGGTCGATCAACAGCTGTATG
TAGCAACAGAGCTTATCTATCACCAAGACAACAAATGAATGCACTCTCTG
CTTTCGTTGATGGATCACAGATCTATGATAATCGGAAGGCTCATTTTGAA
TTGTTGAGGGACAGTACAGGTAATTAATAACTATCCATTTGTCCAAGTCT
TCACTTTTAAATAGCAGATTTGAGGGAAGGGCACAAAACACAACACACAA
AACACGCTTTTTATAAGATTTTATACAAAAAAAAAGATGAGGGGTCTTAA
ATTTAGTGAACACATATGATATGACATTATAGATGTTAAAGATTATTTTT
GAAAAAGACTAATTTGGTTTTATGATTTAGCAATCCCATGTTTGCATACA
CGCTTTTCTTTTTATAAGAATAGTGTACTTTGGCTGAGGGTGAGCATTAT
TCTTATTGTTCTATTGTTCTAAACAATAGGCCTATTTTCTTAACTTTGAA
ATCTCACCCTGATATTCTTATAGAAGTTATTCTTATAAAAAAAAGAAGCG
TGCATTCGCGTGTTTTTATTCGTGTATCCCCGAGCAAACCCTTTCCGGGG
CTATCGAAAATGGAAAGTCAGTATCTCAATCTGAAAGTGAAATTTATGTT
TCATTTTTCATTTTTTACAGACGGTTTAATGAAGATCACAAAATCTGATG
GTTTATTACCTGTTGAGTTTGCTCAAGGTGAGAATGGATGCTTCACAGTT
GGAGGTTGTTCGTTAGCCGGTGATTTTAGAGTCGATGAAAACATTGCTCT
TCACACCATGCATACATTATGGATTCGGAACCACAACAATATTGCTCGCC
AGTTGAAATCACTAAACCCAACATGGAGCCATGATAAGCTTTTCAATAAT
GCTCGAAAAATCAATAGTGCTTTATGGCAACACATCACTTATAATGAATA
TCTTCCAGTCCTGGCAAGCATACCAGCTTACCAAGGTTATAAAACTGACG
TGGATCCATCAATCACCAATGTCTTTGCATCAGCTGCTTTCAGATATGGT
CATTCGCTAGTACCAAATCAATTTGAGCAGTTGAATGTTGGTTTCAATAG
GGAGAATGATCCAGTTCCTTTACAGGATGCTTTCTTCAATCGTCAATTGA
TCAATGACCGAGGAATTGAGCAAACCATGAGAGGATTGGTTGGCAATATG
TCAAACAACGTCGATGACAAGTTCTCCCAAGCTATTGCCAGAAAGCTGTT
CCTTCCTATTGGAGCTGTTGGTTATTTAGATTTGACTGCATTGAATATTC
AACGTGGTCGAGACCATGGATTACCAGGATATAATACTTACAGGAAATAC
TGTGGCCTGCCAGTCGCTGAAAATTGGGCGGATATCGATTCTATCATGGT
ACCAGGCGCTGCTGCCAAGTTTGAAAAAGTCTACAATCATCCTGATGATA
TAGATATTTTTGCTGGAGGAATATCTGAGAAGCACGTCACAAACTTGGAG
ATCGGTCCAACGTTTAATTGCTTGATTGGCCAACAATTCAAAGCAACTAG
AGATGGTGATCGCTTTTATTATGAGAACCCTGGTGTCTTCACAGCACAAC
AGCTAATAGCAATCAAAAAGGTTACATTGTCTACAATCCTCTGTTTGAAT
CTGAATTCGCCAGGAAAACCAGCAGGTCTAGTATCAATTCAGCCAGATGC
ATTCCACACACCAGATGCCAATCAGAACACCAGAAAAACATGCAGCGGAA
ATGCCATCCCCAAACTTGATCTTACAGCTTGGTCAGAAGAGCAAGTTGTA
GTACCAATACAACCAATACCTGTTAAAGACCAAGAATCTAACCAAGATAA
CCATATTGGTAATGTCTTCACAGAAAATCATGATAACGATGTTGGTGGAT
CAATCAATTCGCATGAATCCGAAGCTTTGTCATCCATCAATGACGCGTTA
ACAAATCTTCAGGACGTTCTCATTAAAATGAAACAACAATTCCACAATGA
TGACCTGCTGAACAACCTTGATGAGGACATTGTTGAAGAGACCCTTCATC
AATCCAAGAAGAATATTCACCAAAGATTAAAGGATTACATTCACTCAAAG
AAGAACGTTGAAAGTGACATTGAAGGTGAAAGTGTTCATGTCAAGGACGA
TAACCAGTAGAACTCCTTTATATAGTCACACTCATATAGTCACGAGGATA
ATAATACTCTACAGTGCACGCACTAGTATTTGGCTTCTACCTTAAGTGGA
TTAATTTTCGCGTGGACAAAATTTCGCGAATGGAAGATTGAAAATTTTCG
CGTGGACTAAATTTCGCGATTTGGCCTGTTTTTTACCTAATTTCTTTCAT
TTTCCTAGGGGTTTTGACAAAAATTGCAATTCTAAAAATTTCGCGTGGAC
AAAATTTCGCGAATGGAAGATTGAAAATTTTCGCGTAGACTAAATTTCGC
GATTTGGCCTGTTTTTTACCTAATTTCTTTCATTTTCCTAGGGGTTTTGA
CAAAAATTGCAATTCTAAAAATTTCGCGTGGACAAAATTTCGCGAAAATG
GCCAAAATACGCGAAAATCGCGAAAATTAATCCACGCGAAAATTAATCCA
CTTAAGGTATGTCGAACAGTCACTAATGAAGTGTCAAAAATTATTTTATA
TTTTGTCGATTGTAATCAATATAGCCCTTTTAAAATTTTATATCGTGATA
TATCGTGATCACTTTGCAGTTAGGTGCTTATTTTTTCTACTGCTGAGACC
GGCATATCTGGGGCCAATACATTAGTTCGTGTATAGTTTAATGAATAGTG
TTTTTTTCAGGCTCGTTTTTCTTCATTTTGCTTTAAAATACAAGGAATAT
AATAATATATAATTCATGTTCATTGATAAAGTAAAGTTTTTCTTTATTTT
CCTTGAAAAGTAACAAGATTTTACTGTAGTGATTACGAAATTTTTCCGAA
ATACGCCTCATACAGGCGAGTCCTGGGATAATCTACTCATCGATCAAAAT
AGTGATTCGACATGTGGACGAGGTTGTGAAGTTTCTTGTTCATTTTCCAT
GAAAACAACTCATGTTCAATTTGTCTGAGAATTATTTACTTACATGTGCT
TTTGAAAATAAAATGTAGCGTTTTCTTTATTTTCCTTGAAAAATACAAAG
AATACACTTAATCTTCTTTGATTCGTTAATGTTCTTCCTTTTCCTTGAAA
AATACAAAGAATACACTTAATCTTCTTTGATTCGTTAAGTAAGATTGTTC
TTCCTTTTCCTTGAAAAATACAAGATTACACTTCATGTGCTTTTGAGAAT
AAATGGTAAAGTTTTTCTTTTTTTTCTTGAAAATTGAAATAGAATAATTC
ATGCTTTACTACATTTTCCTTGAAATATACAAAGGAAACACTCCATGGGC
TTTTAAAATAGATTGTAAACGTCTTTCTTTATTTTCCTTGAAAAATTACA
TAGAATAAATAAACTTCATGTTCAGTCAGAAAAAAAAGTAAATTGTTACC
TCATTTTCCTTGAAAAATACAAATAAAACACTTCATGTATTTCATTGGTT
AATAAGGTTAAACTTCATTTTCCTTGAAAAATACAAAGAACGTTCTGTCA
GATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001332XLOC_001332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002491-exon-sc0000020-1575043694:209273..209325TCONS_00002491-exon-sc0000020-1575043694:209273..209325Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1575043694:207983..208138TCONS_00002491-exon-sc0000020-1575043694:207983..208138Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1575043694:207094..207310TCONS_00002491-exon-sc0000020-1575043694:207094..207310Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1575043694:206207..206424TCONS_00002491-exon-sc0000020-1575043694:206207..206424Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1575043694:202770..205705TCONS_00002491-exon-sc0000020-1575043694:202770..205705Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1510915933:209273..209325TCONS_00002491-exon-sc0000020-1510915933:209273..209325Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1510915933:207983..208138TCONS_00002491-exon-sc0000020-1510915933:207983..208138Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1510915933:207094..207310TCONS_00002491-exon-sc0000020-1510915933:207094..207310Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1510915933:206207..206424TCONS_00002491-exon-sc0000020-1510915933:206207..206424Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1510915933:202770..205705TCONS_00002491-exon-sc0000020-1510915933:202770..205705Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1491911889:209273..209325TCONS_00002491-exon-sc0000020-1491911889:209273..209325Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1491911889:207983..208138TCONS_00002491-exon-sc0000020-1491911889:207983..208138Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1491911889:207094..207310TCONS_00002491-exon-sc0000020-1491911889:207094..207310Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1491911889:206207..206424TCONS_00002491-exon-sc0000020-1491911889:206207..206424Clytia hemisphaericaexon
TCONS_00002491-exon-sc0000020-1491911889:202770..205705TCONS_00002491-exon-sc0000020-1491911889:202770..205705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:202770..209325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.7729	53.5168	27.4949	17.6726	9.80888	14.6002	6.30963	4.27734	39.9544	54.8115	55.0062	41.0016	3.95087	4.42145	0.0595907	0.0329462	33.6146	30.2944	0.14649	0.0845228	186.99	164.006	21.5751	23.6719	5.79247	1.6295	69.1187	26.4249	6.6405	7.87562
Blast
[Close]
BLAST of TCONS_00002491 vs. Swiss-Prot (Human)
Match: PERT (Thyroid peroxidase OS=Homo sapiens GN=TPO PE=1 SV=4)

HSP 1 Score: 318.161 bits (814), Expect = 1.176e-91
Identity = 211/605 (34.88%), Postives = 315/605 (52.07%), Query Frame = 2 
Query:  128 FRSVEGVCNNLQHPTWGAAHTKLRRVVDPEYASDGKFDTPRGFPNTNP-------VLPPPNAVTQQLFDVENQNSGSIKKITTLFMTFGQFLDHDFTETPHQYCKQK------CDVSNSWQYPCFPLLFD-----TTTNSCSANGRSTAVCS---------NRAYLSPRQQMNALSAFVDGSQIYDNRKAHFELLRD--STDGLMKI---TKSDGLLPVEFAQ--------------GENGCFTVGGCSLAGDFRVDENIALHTMHTLWIRNHNNIARQLKSLNPTWSHDKLFNNARKINSALWQHITYNEYLPVLASIPA-------YQGYKTDVDPSITNVFASAAFRYGHSLVPNQFEQLNVGFNRENDPVP---LQDAFFN-RQLINDRGIEQTMRGLVGNMSN-NVDDKF-SQAIARKLFLPIGAVGYLDLTALNIQRGRDHGLPGYNTYRKYCGLPVAENWADIDSIMVPGAAA-KFEKVYNHPDDIDIFAGGISEKHVTNLEIGPTFNCLIGQQFKATRDGDRFYYENPGVFTAQQLIAIKKVTLSTILCLNLNSPGKPAGLVSIQPDAFHTPDANQNTRKTCSGNAIPKLDLTAWSE 1762
            +R + G CNN  HP WGA++T L R + P Y  DG F  PRG+   NP        LPP   VT+ +  V N+      + + L M +GQ++DHD   TP    K        C ++   Q PCFP+            +C    RS+A C          N +  +PRQQMN L++F+D S +Y +  A    LR+  S +GL+++    +  G   + F                GE    T G C LAGD R  E  +L  +HTLW+R HN +A  LK+LN  WS D ++  ARK+  AL Q IT  +Y+P +    A       Y+GY +  +P+++NVF++AAFR+GH+ +     +L+  F    D +P   L  AFF+   L+   G++  +RGL+   +   V D+  ++ +  +LF+ +     LDL ++N+QRGRDHGLPGYN +R++CGLP  E  AD+ + +   + A K   +Y HPD+ID++ GG++E  +     GP F CLIG+Q KA RDGD F++EN  VFT  Q   ++K +LS ++C N        GL  +  DAF      ++     S ++I  ++L AW E
Sbjct:  151 YRPITGACNNRDHPRWGASNTALARWLPPVY-EDG-FSQPRGW---NPGFLYNGFPLPPVREVTRHVIQVSNEVVTDDDRYSDLLMAWGQYIDHDIAFTPQSTSKAAFGGGADCQMTCENQNPCFPIQLPEEARPAAGTACLPFYRSSAACGTGDQGALFGNLSTANPRQQMNGLTSFLDASTVYGSSPALERQLRNWTSAEGLLRVHARLRDSGRAYLPFVPPRAPAACAPEPGIPGE----TRGPCFLAGDGRASEVPSLTALHTLWLREHNRLAAALKALNAHWSADAVYQEARKVVGALHQIITLRDYIPRILGPEAFQQYVGPYEGYDSTANPTVSNVFSTAAFRFGHATIHPLVRRLDASFQEHPD-LPGLWLHQAFFSPWTLLRGGGLDPLIRGLLARPAKLQVQDQLMNEELTERLFV-LSNSSTLDLASINLQRGRDHGLPGYNEWREFCGLPRLETPADLSTAIASRSVADKILDLYKHPDNIDVWLGGLAENFLPRARTGPLFACLIGKQMKALRDGDWFWWENSHVFTDAQRRELEKHSLSRVICDN-------TGLTRVPMDAFQVGKFPEDFE---SCDSITGMNLEAWRE 734
The following BLAST results are available for this feature:
BLAST of TCONS_00002491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PERT1.176e-9134.88Thyroid peroxidase OS=Homo sapiens GN=TPO PE=1 SV=... [more]
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