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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002488 ID=TCONS_00002488|Name=TCONS_00002488|organism=Clytia hemisphaerica|type=transcript|length=971bp
atttttttcttttttgaaatagtTTGTGACTTAAGAGCGGAAGCTAAATA
AATTTGTGTTGAAAAACAGTTGATAGAAGAATCGGGCAGAGAAGATAATG
AAGAAATTCTTGGcaatatttcttttgatttcctttttggCACTTTTCAT
CGAATGCAACGAAAGGGACAACACAGTTGATGAAGTTTTGGATGTCGAAG
AAACTTCTacagaatctgaagttgatgaTGAAGAAGAATACGGAGAAAAA
GgcCTGTTGGAAGACCCAAGGAagaaatgttcaaaaaaatgGCGAAGATG
CACCAAAAGAACCTACAAATCATGCGTAAACACTTACcaaaatgggaaaa
aagtgaagaaaactTGCGGCGAATACCACAAATGTCGTAAATGTAAAACA
AAACTACGAAATGGAAAGTGTAAAATCAATAGGCGTCGTTGTAAGCGCTT
CCCTAAATTTAtcacaatttcaaaattaaattattatCATTGATTATGGT
CTTTAAAGACATCGTTGTAACGTtacaaattatatattttttcctttaaa
tatctttttagttTAGTTAATTAGTCATGAtaggcttttaaaatttttgc
ctCTATTTAGAATTCTTTTATGGAACATTTACAGCTAGGTTGCTATTTTC
AATCTAGGACCCTTCCATTTAGACATTGAAagcattttaattttcaaaag
gcCATTTCATGGAAACTAATCATGGGTtatcaacttgaaataaactttGA
GTGTTTTTCGTCTAACCAACAGGACACTGTTAGGGGAGGGGGGCAACCAG
TCCTGATCGCTTATGATTCCGCTCGACCGTGGAATGGCCATTTTTCTTAC
CGGATGTATTTGAACTAATAATTTGGTGATCTGTAACACGAGGACCAACA
AATCGTCATCACCATGTGACCAATGCGAAAGATTCGTCAAATTTGATGCC
AAAAATCGACAGAAATTCATA Run BLAST on NCBI protein sequence of TCONS_00002488-protein >TCONS_00002488-protein ID=TCONS_00002488-protein|Name=TCONS_00002488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MKKFLAIFLLISFLALFIECNERDNTVDEVLDVEETSTESEVDDEEEYGE
KGLLEDPRKKCSKKWRRCTKRTYKSCVNTYQNGKKVKKTCGEYHKCRKCK
TKLRNGKCKINRRRCKRFPKFITISKLNYYH Run BLAST on NCBI transcript from alignment at sc0000020:135065..136917- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002488 ID=TCONS_00002488|Name=TCONS_00002488|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0000020:135065..136917- (Clytia hemisphaerica)
ATTTTTTTCTTTTTTGAAATAGTTTGTGACTTAAGAGCGGAAGCTAAATA
AATTTGTGTTGAAAAACAGTTGATAGAAGAATCGGGCAGAGAAGATAATG
AAGAAATTCTTGGCAATATTTCTTTTGATTTCCTTTTTGGCACTTTTCAT
CGAATGTAAGTGATAACAGTTATGAATGGTTGTTAATTCCATTTTCTATA
TGAATACATCGGCCTAGATATTTTCCAATGTGATTTCCCTGATTCATTCG
TTATTGATGTAGGGAATTTTTTTTTAGCCAGAGTGACGGCTGGCTTTATT
TCTGAAAAAAAAAACCTTCATAGCTAGCATACGGCTTTGCTTAATGGAGA
CAAAAAGAATCAGGAAAAAATAATGAGCCAATCCCGAGAAAAGCTGGTAA
ACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGAAC
GAACGAACGAACGAACGAACGAACGAACGAACGAACGAACGACAGTTAAT
TTAAAGGACCTTCGTGGTAGGTCCAAAAAGGAAAGTGAAGTGCTGTGAAC
AGAATCGAAGATCAACGAAGCTAACTTGAACGAAACATGAGCAGACTTAA
TAAAGTTTTCTTTTCTTCTTTAACAAGGCAACGAAAGGGACAACACAGTT
GATGAAGTTTTGGATGTCGAAGAAACTTCTACAGAATCTGAAGTTGATGA
TGAAGAAGAATACGGAGAAAAAGGTACAGAAAACATTTTGATAAAAAACT
GACCACATCTACCACGACTATACCAAGCAAGGAGATTCTAAAGTAGAAAT
ATTACAGATTTCTTTGGGATCATTACAAATTCTGCTTTCTAAGAATTTAT
AAATTTTAGGATAGCAAAATTTGCATTTGATGAACTTTGGTTCCAAAAAA
GCACTTTCTTGTAAGGTGCCAATCTATGTTTATTCACTTCCAAGAGGAAC
TTCTTCAACAGAGTTGAAGTGTTCGATTTTTTGAATGAAATTGGAATGTA
CATTGAAAACTGATTTCGAAAATTAGTCCAAATCCATTACTGTATATCCC
AGTCAAAAATTCTTGTGGCGAGACTGTTAATAAACAATGCAAACATTGTG
ATCAGACTTATATAACTGTTTTTTTTCATTTAGGCCTGTTGGAAGACCCA
AGGAAGAAATGTTCAAAAAAATGGCGAAGATGCACCAAAAGAACCTACAA
ATCATGCGTAAACACTTACCAAAATGGGAAAAAAGTGAAGAAAACTTGCG
GCGAATACCACAAATGTCGTAAATGTAAAACAAAACTACGAAATGGAAAG
TGTAAAATCAATAGGCGTCGTTGTAAGCGCTTCCCTAAATTTATCACAAT
TTCAAAATTAAATTATTATCATTGATTATGGTCTTTAAAGACATCGTTGT
AACGTTACAAATTATATATTTTTTCCTTTAAATATCTTTTTAGTTTAGTT
AATTAGTCATGATAGGCTTTTAAAATTTTTGCCTCTATTTAGAATTCTTT
TATGGAACATTTACAGCTAGGTTGCTATTTTCAATCTAGGACCCTTCCAT
TTAGACATTGAAAGCATTTTAATTTTCAAAAGGCCATTTCATGGAAACTA
ATCATGGGTTATCAACTTGAAATAAACTTTGAGTGTTTTTCGTCTAACCA
ACAGGACACTGTTAGGGGAGGGGGGCAACCAGTCCTGATCGCTTATGATT
CCGCTCGACCGTGGAATGGCCATTTTTCTTACCGGATGTATTTGAACTAA
TAATTTGGTGATCTGTAACACGAGGACCAACAAATCGTCATCACCATGTG
ACCAATGCGAAAGATTCGTCAAATTTGATGCCAAAAATCGACAGAAATTC
ATA Coding sequence (CDS) from alignment at sc0000020:135065..136917- >TCONS_00002488 ID=TCONS_00002488|Name=TCONS_00002488|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000020:135065..136917- (Clytia hemisphaerica)
GCCTGTTGGAAGACCCAAGGAAGAAATGTTCAAAAAAATGGCGAAGATGC
ACCAAAAGAACCTACAAATCATGCGTAAACACTTACCAAAATGGGAAAAA
AGTGAAGAAAACTTGCGGCGAATACCACAAATGTCGTAAATGTAAAACAA
AACTACGAAATGGAAAGTGTAAAATCAATAGGCGTCGTTGTAAGCGCTTC
CCTAAATTTATCACAATTTCAAAATTAAATTATTATCATTGAGCAACGAA
AGGGACAACACAGTTGATGAAGTTTTGGATGTCGAAGAAACTTCTACAGA
ATCTGAAGTTGATGATGAAGAAGAATACGGAGAAAAAGATGAAGAAATTC
TTGGCAATATTTCTTTTGATTTCCTTTTTGGCACTTTTCATCGAATGCCT
GTTGGAAGACCCAAGGAAGAAATGTTCAAAAAAATGGCGAAGATGCACCA
AAAGAACCTACAAATCATGCGTAAACACTTACCAAAATGGGAAAAAAGTG
AAGAAAACTTGCGGCGAATACCACAAATGTCGTAAATGTAAAACAAAACT
ACGAAATGGAAAGTGTAAAATCAATAGGCGTCGTTGTAAGCGCTTCCCTA
AATTTATCACAATTTCAAAATTAAATTATTATCATTGAGCAACGAAAGGG
ACAACACAGTTGATGAAGTTTTGGATGTCGAAGAAACTTCTACAGAATCT
GAAGTTGATGATGAAGAAGAATACGGAGAAAAAGATGAAGAAATTCTTGG
CAATATTTCTTTTGATTTCCTTTTTGGCACTTTTCATCGAATGCCTGTTG
GAAGACCCAAGGAAGAAATGTTCAAAAAAATGGCGAAGATGCACCAAAAG
AACCTACAAATCATGCGTAAACACTTACCAAAATGGGAAAAAAGTGAAGA
AAACTTGCGGCGAATACCACAAATGTCGTAAATGTAAAACAAAACTACGA
AATGGAAAGTGTAAAATCAATAGGCGTCGTTGTAAGCGCTTCCCTAAATT
TATCACAATTTCAAAATTAAATTATTATCATTGAGCAACGAAAGGGACAA
CACAGTTGATGAAGTTTTGGATGTCGAAGAAACTTCTACAGAATCTGAAG
TTGATGATGAAGAAGAATACGGAGAAAAAGATGAAGAAATTCTTGGCAAT
ATTTCTTTTGATTTCCTTTTTGGCACTTTTCATCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002488-exon-sc0000020-1575043694:136763..136917 | TCONS_00002488-exon-sc0000020-1575043694:136763..136917 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1575043694:136195..136290 | TCONS_00002488-exon-sc0000020-1575043694:136195..136290 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1575043694:135065..135784 | TCONS_00002488-exon-sc0000020-1575043694:135065..135784 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1510915933:136763..136917 | TCONS_00002488-exon-sc0000020-1510915933:136763..136917 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1510915933:136195..136290 | TCONS_00002488-exon-sc0000020-1510915933:136195..136290 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1510915933:135065..135784 | TCONS_00002488-exon-sc0000020-1510915933:135065..135784 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1491911889:136763..136917 | TCONS_00002488-exon-sc0000020-1491911889:136763..136917 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1491911889:136195..136290 | TCONS_00002488-exon-sc0000020-1491911889:136195..136290 | Clytia hemisphaerica | exon |
| TCONS_00002488-exon-sc0000020-1491911889:135065..135784 | TCONS_00002488-exon-sc0000020-1491911889:135065..135784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:135065..136917 - |
Blast
The following BLAST results are available for this feature:
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