TCONS_00002479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002479
Unique NameTCONS_00002479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002479 ID=TCONS_00002479|Name=TCONS_00002479|organism=Clytia hemisphaerica|type=transcript|length=325bp
AAGGAAAAATCTggatcaaaaataaagaaaaagaccACGGCCTTCAGGTC
ACTTCACTGAACCACAAATATTTTCGGACAGACCTTGAAGATGCGTTATC
TCTCGGACGACCTTTACTCATTGAAGATGTTGGCGAAGAACTTGATCCAG
TTCTCGATATCTTGGAAaagaattttattaaattggGAAGTAGTTTCAAG
GTGAAACTTGGTGACAAAGAAGTAGACGTGATGAATGGCTTCACAATGTA
CATCACAACCAAATTGCCCAACCCTTCTTACACTCCAGAGagaatcaaga
GAATCATTTGAATGTACTTGCTGAC
Run BLAST on NCBI

transcript from alignment at sc0000020:908102..916324+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002479 ID=TCONS_00002479|Name=TCONS_00002479|organism=Clytia hemisphaerica|type=transcript|length=8223bp|location=Sequence derived from alignment at sc0000020:908102..916324+ (Clytia hemisphaerica)
AAGGAAAAATCTggatcaaaaataaagaaaaagaccACGGCCTTCAGGTA AGGAAGAATGGGTTTCTTGGTGAAATCTTGGAAtcctttttgaatgtttt taaattgaaaggTCAAACTCataagatttataaagcccgaagggctagat gtcgtgctttggctgaaaagtatgccgaggttaggtaggaaatcctttcT AGGCCACGTGAgattacaataaaatttcagcgcttgaacaataagaagct tcgcaggttttcgaaagcaataggagcaatattttttgcgatattcactt ctctctctaattcgatcttcaagggaagaatcattttattcgaattagag aaaaattcgaattacagaaagattcgaattgcagAGAGTAATTTTTACCA CTTTCTAGCTGAGGGCACCAAtaatttagttcgaattacagaaagattcg agtaatagagattcgaataagagagagcTGACTGTAAATCAGGTCCAAAC TAGCCTTTGTTTGGAAAATTAACTTGAATCATTCTCTTATATAGGTCACT TCACTGAACCACAAATATTTTCGGACAGACCTTGAAGATGCGTTATCTCT CGGACGACCTTTACTCATTGAAGATGTTGGCGAAGAACTTGATCCAGTTC TCGATATCTTGGAAaagaattttattaaattggGAAGTAGTTTCAAGGTA AGAcaggcattttttcaaaacaaaagaaaatttactaatTGAGCCAAATC TGTTTAATAACGTTGAAACAAAACTGTTTTAGGTAATCTAGAagggttaa aataaaaaaaaactttacccGCCGGCGTAAACCATGGTGGCGCTTCCTTA GTCCGCATACCATGGTCTtatcactttcaaagtggagcTGCGACCCCTGT AAGAAAGGATAAATTCTAACAATTTGGGGATGCTCTGAAATAGGTcatga aaaagaacaaatcaCCAACAAGAGACATAACTCAGTTAACTGGGAAAtca tatatttttaaaatatgtttaatgttgaaacaaatataaatattttgagA CTACGCAATCGTTTTCACCATTGAACCATTGCTTTTGTTTCCGTCTTTTG TTAAAAGTTAGAGCTCCCGtacataaaaaatatttgttttgcatattttt tgaTCATCCCAAGAATCGAAAATGGTAACGTGAAGAAAATTgacaataaa ttaaaaaaatacatcACCAGACCGGTGTTTTCTATTATGACTATGATTAA ACACTAGGGCCAAAACATTATCAAACAACGTGCAAATAAAAACGTTGATG ATCTTCGTCGTTGGATCAAGGCTGAAAATTCCCTAAAGTTGGAAGGCAGG GTCTTTAATCGTAGTCAAACCAGGCCAAataaacgtaaatctcgtgatcc aagccaccaTAAACTTCCAAatgaatatcactgggtcgataaacTCAAAC GTATTTAGATTAatcttgaatttttgttttctttactgCAGGTGAAACTT GGTGACAAAGAAGTAGACGTGATGAATGGCTTCACAATGTACATCACAAC CAAATTGCCCAACCCTTCTTACACTCCAGAGGTTTGTCTAATTTCTAAGA TGTATAGatatgatatgagccctccgaatgcattcgggataGGCCCTACC CATGAAGAATTAGAAATCACGGCGCTGGCAGTCGGACAGAGTCAAGGGTG ATAACCAATACACCTTTCAAATTTTCCATAGTAAATAAAAAGCTCCATGC GTTGAAAGGTTCTACCTACATTGATCCCAGCCGGCactcaacgttgtttc aacgttcatctaacgctaACGttaatggacgttgtgaacattagatgaac gttaaaacaacattgtgtgtcagctgggataaTATTCGTAAACGTTAACC TCGATTGGCCAATCGGAGAATATCGGTTCAACCTATTGCCGCTATCAAAT AGTTCATGAGTCACGGGGGTTTTAGGTCCTTGCGTAAAGCTAGTATGACG TGAAGTATAATATTATAATTGGTGGCCCAACGACTGATGGCCCGTTGCGA ATGATTGTCCTTCTACTTGACCAATGAACAGTCACTACAAACTAGGCTAC TATATCTTCATTCGTTCTGAGCGTAAAACTGTTACTCTTCTCACTCTTTG AGAGTAACTTTTTGCCtgctctaacaattagaatatgcagggcagaaagt tggtcgtctaaactagagctaaggcctaaaagcctggagttGCTTATTGT GTATactccatcatcatcatcatcatcatcatcatcagcaGCAGGTGGAT CTCTGTTCGATTTTGAAACGCGCAGCGATGAAATGTTATCGGCTACAGTT TTTGaacgatttttcaaaatgaagcggGGATTCGTTTTTTGAATTCCTTG AACTCTAAATTTTCGAAATgacaccaaaaaaaattttcccgcgaccttta gttttttttccaggtgatttttcaacaaattgTTTCAAAAGCGAACATAA GTGGAATCTTTTTTGTGAgtagatatttgcaaatttttttcagcTGGTAG CCTCAACAGGGTCCTTATCTTCAAATTTGAgcagagaaaaagtcaattca cTTCGTCATGTTTTGGGAATTTCACAAAATCACggtcaatttttttgcct ggaaGATGCCCTACGTTATATGCGAAACGCTTCTAGACCCAAATTTCAAA CCTATgagaaagacaaaaaaataaatttttctttttgatccaATTCAATT TTCAGGACCCAAATATAACCACTTTGATAAATATGTGGTGTTTtgtgcga aaaaaaaatttttttagccaatttttcaagttgaaattCTGGTATGTTCG TTATTGAAACCTCGTTTTTGCAATTTGATTGCAATCCATGAGAAATAATT GTCAATGTTGTCCCAAATGACACTATCTGCTATTTATAATcgtaaaattg ataattttatcGAAATAGGTAATCTTTGGTACCTTGGGGGGTGTTATTTT AATCCTATGGAGCACCCAATTTTATCATCGTGATCAGAAGGTTTCAAAAA CGAACAGGGTGGTTTTAAGATAGCCACTACCCTAGATGCTAATTTTTGCT TGATGTATCGTTTTCCGTGACTCAAATTTGACTAGTGCTTGAATATTATT GAAAGggtgaatatattttttcatttttcaaaaatcttgattttcgGGGC CTGGGACGAGTTTTTACGCCCAAACGAGGCTAAATCTTTGggacagcctg gagacttcaaaaatggtcagatttggctgaaatttggctcacttgttcct tgggaaaTTATCTggagttaatttttttcatttttcaaaaattttgattt ttggggcctggggacgagtttttcaccaaaacgaggctacaactttgggg cagcctggagacttcaaaaatggtcggatttggctgaaatttggcacact ttttccttgggtgaatatctggagagtgttttccatttttttcttaattt tgtcatttttttcttaattttgatttttgaggcctGAGGACAAGTTTtac gccaaaacgaggctaaaactttggggaaTCCTTGAGACTTCAAAAGATGG TCGGATTGGGTTGAAATTCGACACACTTGTTTCTTGGGTAAAATATGTGG ATGtgtcttttattttttgaaaattttgattcttggggcctggggacgag tttttcgcccaAACGGggctaaaactttggagcagcctggagacttcaga AATGGTCGGAtttaacttaaatttggcacatTTTTTCTTTGGGTAAATGT CTGTTCggtgtttattttcattttttgaaagtttagatttttgggtcctg gggacgagttttacGCCAAAACGAGGTAAAAACTTTGGGGGAGCCTAAGG AGTTCAAAAATTCGCTTAGATACAAATTtgaatcagagaaaatttttgcg CTTGAAAGTCCGTTTAGCCTGTTATTTTTAAAGGAATTCCTCCACCCTAT TATTTGAGCATTTACAATCGGGCCTTTTGAGTcagttcccagctggcaca caacgttatttcaacgtttatctaacgttcacaacgtccatataatgtta gatgaacgttgagacaacattatgtgccagctgggttgggaaaatactga agttgagcccagtgcgttacGCACGTTCAATTATTTCACAGACCGGAACA TTAGCCTCCAAATGAGGATTAAGAGTGATAAGACTGAGGAAAATTCTTTG AAGTTCAGTCCACATATTGATAAATTCTATTGACAAGTATCCGAAAATAC AGTCACGTGAGCTTAGTACTTTACAAATCGGTCTGCAAAATACACGTTCA ACCTCTCTGaaattgaaactaaaataaaaattttcagcatTTAGAGAAAT TGACAatatgacacccctgtctcagtgacccggtgagaaCTTTTTATTAC CCAGTGGGGATAGATTGAAGGAGCCAAATGCCAATAgggatgaaaaattt taaattttattgtttacagCTCCAAAATCCAGTGAGAATTCCCATAATTA ATGCTTTTCCCAGTGGGGATGAGATTTCAGTGTAgtttttcaatggggat gaaatttcagggtatttttctcACCGAGGACAAATTTTCGgccgattttt ccagtggggagggggtcccactgggtctgtgacacgggagTGTAATAGGA GAAGGGTGCAAACTTTCAGTTCGGTACTCTGCGCTTTTGTTATTgctaaa aaatgcaaaaaattacCATGAGCCGCAGCGAAAATGAACAACCCGATAAC TAGAAGAGTACCATAATGAACTTTCCTTGCAGAGGGCCGTTAGCTAATTA TTTTTGCCTTTATCTTTACGAACTTTAACGTGCTAAAGCCTGGGCTTCAA CTTCAGTGTACGTGTGAAGGTGGAAGgccaaattttaaacaaaaaccaTA ATAAGATCAAGTAAAACTGTAATCTTTTAGGGGGTCTGACTATTGGTTTT TAGCAATATTCCACTAGATTTTGAGATATTTCTAGTTTAagatctttcaa aaataaaaaaaatcagaatatgcttacgtcagcaaaaaaactaGCCCttt agatattttgaaatttgatctAGTGGCCAAAACTTGACTAACAATACCAG TACTCTTTTAATATAAATTATGGTCTAAAGTCGAAAAGATTGACAATTTT ATTAGGTATAACATGAAATGCTCGAGAATAAacttaaaaagaagaaaaat tgaagcttcTCCAAAGAGATATGAGTGCAGCTTAgggaatttgaaagaaa atcttaagaataTGTATCGGCCCAACTTCTGGGGGTGAGTTAAATAAAGT ATTCATAGCAATGATTTTCAAGATAATCggtattttcaaaatgacgatAA GATATAAATGAATATGAAATGATGTTAGAAAAATCTTACATGATTAAAAG TCTGAGTAAAAATATGATCCGATTACTTTAAAAAAACTAGGAAGAACTAG TGTGAGTCTGAATGGATAgcaccttaagtggataaattttggcgtggact taatttggcgattggccgaaaaacaatttttggcggggatttaatttggc gaatcggaaattttgtcacatttaaatgggtgaaaattactcaaagtATA Cagtactaaaaagttgtgatttttcacataattcttttttttgttaaatt tggccgggatttaatttggcgaattgccgaatttggaaattttggcgcca aaatttatccacttaaggtagatAACATCTCACCATAAAGAAATCGAAAT GGAATGAAAGTCTAGCCACTTTTTCTGAGCTCAAGTCTTGGAATTTCTTC TAGTtgtgttattgaaaaacaaattaataTGTTGGAAGCTGGAAGGAATT ACcaaaattttttgcaaatttaaacAAAGTTgacataaaatatatatttt tataaattacgtcacaaacatcacttgcctcgtattgaCTTGGTTCTTTA AATTTGCTTTCTattcatgaaaaaatcatttgatGTCTCAATAGACATAA TCACCACGGCCATTGCTTGAAAacaggcaagtgatgttcgtgacgtaatt tatggaaTGATAGCGGGTTTCTGTCAAAGAAATTGAATAAATTCGTATTA ATTaataaaaaatggcaaaattaagacgaaaattcaaaattaactAACAA ATAGACTGAAAATGCAGACACGCCATAAAAAGATGGTTACTGATATAGGT TGCTTTCTGTAAAACacttaaatttgaataaattaacatgaaatgaaaaa gaattaatACAAAAATCTATTTGCAACTTATAGAAATAATGAACCACCTT GAAAATTAAGAAACAAAgagcaattttattttttccaattaATAAAGAAG GTCCGTGAGAATCGAATTTTATTAGActtgaatttgaacttccaaTTGGA TTCGGTCCACGttttttaaaaactgaaaaaatttccgaaatttttggcaa atatttaaaaataaaattgaagttcgaaTAAATTAACATTAAATGACAAA ATTaggacaaaaatttcaaaataattaacAAACACTGAATATGCTGAAGC ACCATAAAGAGATAGTAGCTAATACTCTTTAGTTGACATAAAATTGAGAT GATTTCTGTAAAACacttaaatttgaataaattaacattaaatgacaaaa ttaggacaaaaatttcaaaataattaacAAACACTGAATATGCTGAAGCA CAATAAAGAGATAGTAGCTAatacTCTTTAGTTGACATAAAATTGAGATG ATTTCTGTAAAACacttaaatttgaataaattaacGTAAATGAAAGAAGT TAGgacaaaattctttaaaaagaaataatGAATCACCTTAAAAATCGAGA AACAAAGAGTAAAAGCGCACTTCAAAAGTGCAATTCAAATTAAAAGCTGT ATTATAAAACTGAGCTAACATTGGAGATGTTAATTTGAAAGCTCCGTGAG TATCAAAATTATGCTTGAAATTTGAgctgtatttttataaatttgggtTA GCCCAAATTTCCTTGCAAATCTCAACAAAGTTAACATAGAATTTGAGATG ATACTTGTAAACTGAAATTCGAATAAATtacataaaattaaaaaattagg ACACAAATTCAAAGATAATTAACAATATACTGACAGTGCTGAAACACCAT AAATgtgagaagaaaaaaatgatgacaaaTATAGCTTATTgactgtacac gtttttttataagcataacgcttataagcatatccaggcccaaatcttgt aaaaacttaAGCATTGGCTTATAGCATATGCTGAGGCTCAGTTTACAGtt attgaatttttactaaaataccGTGTAATATTGGGGGTCAAAAAAAACTA ACAGGATAAAAGACGTACGTCATTACATAAGCATAGCATAAGCAtatttg aggctcaaaaataGAATTTCGCTAAGCATAATGAAGCTGAGAAAAAATAC CCCTATGCGTATAAAAAAAAACGAGCAACTTGTTAAAGCTTTGAAATAAT AGTCCTAGTAGAAAGTAGACTTCATCGAAATAAATTGGAAATAAATTAAT GGAAtcattaaaaagataaattgTACAAAAAGGTAAAACCAAAATTAGCA CCAccaaaaattataaatatttgGTGAAACTCACGAAAGTTTCTTTTGGG TTATAATgactaccttattggtatatattttcgcgtgttacaaatttcaA TCGcgaattttttcggaaaaacgtttttcgcgtgtattaaatttcgcgat tgccgacttctggTAAATTTTCTCgcgtattaaatttcgcgattcactaa attaggtattttgaaaaagtgGGAATATAGTGTCTTtagtcatttttgaa aattttgcatttttcagcctatttaaaaaattttttcgcgtgtatttaat ttcgcgattttgtaattttgaaaaattcaaacagtaaaaatttcgcgaaa attgacctAAAAACTCGctaaattaagtacccgcgaaaattcgtAACACG CAAAAATATATACTAAAAAGGTACTAAAAATAAAGTGTGTTCACATATGA TTGGCAATGGAAGCAAAAAAAGCCTgtaagaatgcctgtaacttttgata gtcaaatacaattgtgaatattttttgttttgttttagagaatcaagaGA ATCATTTGAATGTACTTGCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001323XLOC_001323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002479-exon-sc0000020-1491911889:908102..908148TCONS_00002479-exon-sc0000020-1491911889:908102..908148Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1510915933:908102..908148TCONS_00002479-exon-sc0000020-1510915933:908102..908148Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1575043694:908102..908148TCONS_00002479-exon-sc0000020-1575043694:908102..908148Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1491911889:908646..908798TCONS_00002479-exon-sc0000020-1491911889:908646..908798Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1510915933:908646..908798TCONS_00002479-exon-sc0000020-1510915933:908646..908798Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1575043694:908646..908798TCONS_00002479-exon-sc0000020-1575043694:908646..908798Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1491911889:909593..909682TCONS_00002479-exon-sc0000020-1491911889:909593..909682Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1510915933:909593..909682TCONS_00002479-exon-sc0000020-1510915933:909593..909682Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1575043694:909593..909682TCONS_00002479-exon-sc0000020-1575043694:909593..909682Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1491911889:916290..916324TCONS_00002479-exon-sc0000020-1491911889:916290..916324Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1510915933:916290..916324TCONS_00002479-exon-sc0000020-1510915933:916290..916324Clytia hemisphaericaexon
TCONS_00002479-exon-sc0000020-1575043694:916290..916324TCONS_00002479-exon-sc0000020-1575043694:916290..916324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:908102..916324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.479479 0 2.30803 0 1.09649 0 1.81695 0.000287983 0 0 0 1.37424 0 0 0 0.210628 0 0.175755 5.04589 0.474953 0.718735 0.0427544 0 0 0 1.61965 0 0.368436
Blast
BLAST of TCONS_00002479 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-46
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 3
Query:    3 GKIWIKNKEKDHGLQVTSLNHKYFRTDLEDALSLGRPLLIEDVGEELDPVLD-ILEKNFIKLGSSFKVKLGDKEVDVMNGFTMYITTKLPNPSYTPE 290
            GKIWIKNKE  + LQ+TSLNHKYFR  LED+LSLGRPLLIEDVGEELDP LD +LE+NFIK GS+FKVK+GDKEVDV++GF +YITTKLPNP+YTPE
Sbjct: 3610 GKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPALDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPE 3706          
The following BLAST results are available for this feature:
BLAST of TCONS_00002479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH51.403e-4679.38Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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