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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002478 ID=TCONS_00002478|Name=TCONS_00002478|organism=Clytia hemisphaerica|type=transcript|length=2293bpRun BLAST on NCBI transcript from alignment at sc0000020:898455..916324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002478 ID=TCONS_00002478|Name=TCONS_00002478|organism=Clytia hemisphaerica|type=transcript|length=17870bp|location=Sequence derived from alignment at sc0000020:898455..916324+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002478 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 526.168 bits (1354), Expect = 1.560e-162 Identity = 253/364 (69.51%), Postives = 298/364 (81.87%), Query Frame = 3
Query: 1194 PPWK*SVLV*ITQFMSQAGFLQALQEFPKDTINEEMVELMEPYFK--------AKRVCGNVAGLCSWTKAMAKFFSVNKEVLPLKANLSIQEAKLELAMSDLQTAQQQLDEKQKELDAAQAEYESAMREKQILVDDAETCKRKMVAASALINGLGGEKERWTEQSKEFAQQTERLVGDVLLGTAFLSYSGPFNQEFRKSLEKNWQKELHQRQIPFTFKLNVTSLLVDTATLAEWNLQGLPNDELSSQNGIIVSKAARYPLLIDPQSQGKIWIKNKEKDHGLQVTSLNHKYFRTDLEDALSLGRPLLIEDVGEELDPVLD-ILEKNFIKLGSSFKVKLGDKEVDVMNGFTMYITTKLPNPSYTPE 2258
P W+ S+ + M+ FLQ LQ+FPKDTINEE++E + PYF+ AKRVCGNVAGLCSWTKAMA FFS+NKEVLPLKANL +QE + LAM DLQ AQ +LD+KQ ELD QAEYE AM EKQ L++DAE C+ KM AS LI+GL GEKERWTEQS+EFA QT+RLVGDVLL TAFLSYSGPFNQEFR L +W+KE+ R+IPF LN++ +L+D T++EWNLQGLPND+LS QNGIIV+KA+RYPLLIDPQ+QGKIWIKNKE + LQ+TSLNHKYFR LED+LSLGRPLLIEDVGEELDP LD +LE+NFIK GS+FKVK+GDKEVDV++GF +YITTKLPNP+YTPE
Sbjct: 3348 PSWQESL-----KLMTAGNFLQNLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCGNVAGLCSWTKAMASFFSINKEVLPLKANLVVQENRHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQTLLEDAERCRHKMQTASTLISGLAGEKERWTEQSQEFAAQTKRLVGDVLLATAFLSYSGPFNQEFRDLLLNDWRKEMKARKIPFGKNLNLSEMLIDAPTISEWNLQGLPNDDLSIQNGIIVTKASRYPLLIDPQTQGKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPALDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPE 3706 HSP 2 Score: 168.703 bits (426), Expect = 6.435e-54 Identity = 124/193 (64.25%), Postives = 149/193 (77.20%), Query Frame = 1
Query: 664 DYFEKFRRQTHVTPKSYLSFMNSYKQVYVAQKTEIDGLAHRMNIGLDKLMEASRSXXXXXXXXXXXXXXXXXXSVKAEAVLKEVTQRAHAAEKVKSQVQEVKDRA----DVIGEDKAVXXXXXXXXXXXXXXXXXXXQTIKAADIATVRRLGKPPPLIMRIMDCVLILSRKGLDPVTPDPDRPGNKASWSESL 1230
DYF++FRR THVTPKSYLSF+ YK +Y + E+ LA+RMN GL+KL EAS SVA LSKEL KEKEL VA+ KA+ VLKEVT +A AAEKVK++VQ+VKDRA D I +DKA+AE KLEAAKPALEEAEAALQTI+ +DIATVR LG+PP LIMRIMDCVL+L ++ + V D ++ SW ESL
Sbjct: 3162 DYFQRFRRSTHVTPKSYLSFIQGYKFIYGEKHVEVRTLANRMNTGLEKLKEASESVAALSKELEAKEKELQVANDKADMVLKEVTMKAQAAEKVKAEVQKVKDRAQAIVDSISKDKAIAEEKLEAAKPALEEAEAALQTIRPSDIATVRTLGRPPHLIMRIMDCVLLLFQRKVSAVKIDLEKSCTMPSWQESL 3354 HSP 3 Score: 62.3882 bits (150), Expect = 6.435e-54 Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 2
Query: 527 LSGLISGCTINWFQRWPKEALIQVAMHYLSNFEIKCTEETKNELAK 664
LISGCTI+WF RWPK+AL+ V+ H+L++++I C+ E K E+ +
Sbjct: 3102 FPALISGCTIDWFSRWPKDALVAVSEHFLTSYDIDCSLEIKKEVVQ 3147 HSP 4 Score: 93.9745 bits (232), Expect = 2.351e-19 Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = -3
Query: 354 ISRSYNLTNVMENLKYLYRVAGEQGKGITFVFTDQEVKDEGFLEYLNNVLSSGEV 518
++RSYN +N+ME+LK LYR AG+QGKGITF+FTD E+KDE FLEY+NNVLSSGEV
Sbjct: 2982 LTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEV 3036 The following BLAST results are available for this feature:
BLAST of TCONS_00002478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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