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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002477 ID=TCONS_00002477|Name=TCONS_00002477|organism=Clytia hemisphaerica|type=transcript|length=2274bpRun BLAST on NCBI protein sequence of TCONS_00002477-protein >TCONS_00002477-protein ID=TCONS_00002477-protein|Name=TCONS_00002477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp MSQAGFLQALQEFPKDTINEEMVELMEPYFKAKRVCGNVAGLCSWTKAMARun BLAST on NCBI transcript from alignment at sc0000020:898455..916324+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002477 ID=TCONS_00002477|Name=TCONS_00002477|organism=Clytia hemisphaerica|type=transcript|length=17870bp|location=Sequence derived from alignment at sc0000020:898455..916324+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:898455..916324+ >TCONS_00002477 ID=TCONS_00002477|Name=TCONS_00002477|organism=Clytia hemisphaerica|type=CDS|length=9396bp|location=Sequence derived from alignment at sc0000020:898455..916324+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00002477 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 526.168 bits (1354), Expect = 1.291e-162 Identity = 253/364 (69.51%), Postives = 298/364 (81.87%), Query Frame = 2
Query: 1175 PPWK*SVLV*ITQFMSQAGFLQALQEFPKDTINEEMVELMEPYFK--------AKRVCGNVAGLCSWTKAMAKFFSVNKEVLPLKANLSIQEAKLELAMSDLQTAQQQLDEKQKELDAAQAEYESAMREKQILVDDAETCKRKMVAASALINGLGGEKERWTEQSKEFAQQTERLVGDVLLGTAFLSYSGPFNQEFRKSLEKNWQKELHQRQIPFTFKLNVTSLLVDTATLAEWNLQGLPNDELSSQNGIIVSKAARYPLLIDPQSQGKIWIKNKEKDHGLQVTSLNHKYFRTDLEDALSLGRPLLIEDVGEELDPVLD-ILEKNFIKLGSSFKVKLGDKEVDVMNGFTMYITTKLPNPSYTPE 2239
P W+ S+ + M+ FLQ LQ+FPKDTINEE++E + PYF+ AKRVCGNVAGLCSWTKAMA FFS+NKEVLPLKANL +QE + LAM DLQ AQ +LD+KQ ELD QAEYE AM EKQ L++DAE C+ KM AS LI+GL GEKERWTEQS+EFA QT+RLVGDVLL TAFLSYSGPFNQEFR L +W+KE+ R+IPF LN++ +L+D T++EWNLQGLPND+LS QNGIIV+KA+RYPLLIDPQ+QGKIWIKNKE + LQ+TSLNHKYFR LED+LSLGRPLLIEDVGEELDP LD +LE+NFIK GS+FKVK+GDKEVDV++GF +YITTKLPNP+YTPE
Sbjct: 3348 PSWQESL-----KLMTAGNFLQNLQQFPKDTINEEVIEFLSPYFEMPDYNIETAKRVCGNVAGLCSWTKAMASFFSINKEVLPLKANLVVQENRHLLAMQDLQKAQAELDDKQAELDVVQAEYEQAMTEKQTLLEDAERCRHKMQTASTLISGLAGEKERWTEQSQEFAAQTKRLVGDVLLATAFLSYSGPFNQEFRDLLLNDWRKEMKARKIPFGKNLNLSEMLIDAPTISEWNLQGLPNDDLSIQNGIIVTKASRYPLLIDPQTQGKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPALDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPE 3706 HSP 2 Score: 159.458 bits (402), Expect = 7.349e-40 Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 3
Query: 660 FRRQTHVTPKSYLSFMNSYKQVYVAQKTEIDGLAHRMNIGLDKLMEASRSXXXXXXXXXXXXXXXXXXSVKAEAVLKEVTQRAHAAEKVKSQVQEVKDRA----DVIGEDKAVXXXXXXXXXXXXXXXXXXXQTIKAADIATVRRLGKPPPLIMRIMDCVLILSRKGLDPVTPDPDRPGNKASWSESL 1211
FRR THVTPKSYLSF+ YK +Y + E+ LA+RMN GL+KL EAS SVA LSKEL KEKEL VA+ KA+ VLKEVT +A AAEKVK++VQ+VKDRA D I +DKA+AE KLEAAKPALEEAEAALQTI+ +DIATVR LG+PP LIMRIMDCVL+L ++ + V D ++ SW ESL
Sbjct: 3167 FRRSTHVTPKSYLSFIQGYKFIYGEKHVEVRTLANRMNTGLEKLKEASESVAALSKELEAKEKELQVANDKADMVLKEVTMKAQAAEKVKAEVQKVKDRAQAIVDSISKDKAIAEEKLEAAKPALEEAEAALQTIRPSDIATVRTLGRPPHLIMRIMDCVLLLFQRKVSAVKIDLEKSCTMPSWQESL 3354 HSP 3 Score: 93.9745 bits (232), Expect = 2.311e-19 Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = -2
Query: 354 ISRSYNLTNVMENLKYLYRVAGEQGKGITFVFTDQEVKDEGFLEYLNNVLSSGEV 518
++RSYN +N+ME+LK LYR AG+QGKGITF+FTD E+KDE FLEY+NNVLSSGEV
Sbjct: 2982 LTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEV 3036 The following BLAST results are available for this feature:
BLAST of TCONS_00002477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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