TCONS_00002474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002474
Unique NameTCONS_00002474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002474 ID=TCONS_00002474|Name=TCONS_00002474|organism=Clytia hemisphaerica|type=transcript|length=2416bp
aaaaaatgacaagaaactacaattttttcctctttttaagcagttttaac
cgaatttaggggtggatcttcaaaagtcaaaagtttTGGAGATATATGTG
CAAAGAATTTTGGCTCGGGAATGATTTGATCCATGAGAAAACAACGTCCG
AAAATCACGATATTTTGATCCGAGCACGATTAACTACTGGACAAATTGTA
GTATCAAGGTATGAGAGATTCACAGTTGCTAACGAATCACAATCATATCA
AATGTATTTTGGTAAACTTATCAGTGGAATACACTCATTTGCAAACCTAA
CCCTACTGATAAGGAATCTAAATGGAAGTAGTTTCCATACCCCTGACAGA
GAAAGTAGAACAGGTTGTGCAGAGAGACATGGTTCTTTTTGGCATAACTC
ATGCGCTGATTTTCACCCCAATAAATATTGGAGACCACGTTGGAATGAGT
TTAGAATTGGACATCCGACGGGGGTGATAAAAGAAATTCAACTTTTAATT
AGGCCTTCCAGTATGCCTTGAGATAGGAGGGAGCAAttgacgtgtttttt
ataagaaccctGATCAGGCTTTCATATCGTGTCTTAATCCACGAATGGCA
TCTTATTTATTCATATCTATATTAACCCTTAAATGTAGTTTTTTTTGTGT
ACTTTATATTATGATTTTTGGTATTCTGGAAGAATGCATAACTGCTTTAA
CGGATTTATTTTGATGAATAtctgaaaaaacgacgatttgaCGATTGTTC
TTATCCGAACAACCATATTTTTTCTGAATCGCAATTTTCGATCACCTAAA
GGCGGTTTTAACTGTGTAAATATACAAGTTAAATCTCGATTTGAATCAAT
TAAATATTTAACTCAATAAAGTATGCCCAATTATTTTATCTCCCTAATAT
ATCTTTGTAGGGAAATGGTGTTATTGATCTTCACGCGTCAAAGAGTAGAC
CATTTCACCTTTAGGGTCTCGGATATTGTTGATCGTACATTTAATCGAGT
TAAAAACTTAGTATCCTCAATCATTTTATCTCCCTAATATTTCTGTGTAG
GGAAATGGTGTCATTGGTCTTCACGTGTCGAAGAGTACATCTACCCGATG
GATCACAATCCCGAATATTCCTCCATCTTGGTTCCCAATGTATTGAACGA
ACTTTTTAATCGATACCATTGCTAAACAGGGAAAGGCTGCTCTTTTGATT
GGTGAACAGGGGACAGCGAAGACaattatgatacaaagttacaTGAAACA
TTATGACCCTGAAGTTCATCTTACCAAAAGATTCAACTTCTCTTCTGCTT
CTACTCCAATGCATTTCCAGCGTACGATTGAAAGTTACGTGGACAAACGT
ATGGGAAGTACGTACGGTCCGGTGGCCGGTAAACAGATGTCCGTATTCAT
TGATGATATCAACATGCCGGTCATTAATGAGTGGGGTGATCAGGTGTCAT
TCGTTGTGGTCATTTTTGCAAAGAGCGTGGTTTCACGGACGAAGTTAGAA
CTCTGGCAAATGATTTGGTTGCTTGCACAAGAAGGTTGTGGCAATATACT
AAGGTCAAAATGTTGCCAACGCcggcaaaatttcattacgTCTTTAACTT
ACGTGATTTATCACGTATTTGGCAAGGGATGCTTAACGCTGTCAGTGACG
TCATCACAGAAACGTCCACGCTTTTGTCTCAATGGCAACACGAATGCACA
CGCGTTATTTGTGACCGCTTCGTGAATGAGATGGATAAGAGCTGGTTCAG
GAAAGTTGCTGTACAGATATGTGATGAGGAGATTGGGGCTAGTCATGATT
TGTCATGCTTGGAAGAGGAAGCTTACTTTGTTGATTTCTTGAGagATGCG
CCAGAGCCCACAGGAGATGAACCAGATGATGCTGATTTCGAAGCTCCCAA
GATTTATGAGCCCGTTACTATCTTGGAACCATTTTCGAAACATATGACTC
GAAGTATTATAGACGAAATCAATTTACCGGattgaaagTATGGACAGCTT
ACGCGAGAGATTGTCACACTTCATGCATCAATATAATGAAAGCGTTCGTG
GTTCTGGTCTTGATCTGGTTTTCTTTGAAGATGCTATCACCAGCTTGCTG
AAGATTTCTCGTATCCTAGCAACGCCACGTGGCAATGCATTGTTGGTAGG
CGTTGGAGGATCTGGTAAACAGAGTTTGACAAGACTCGCTTCTTTTATTG
CTGGTTATAAAACATTCCAAATCACTATCACAAGGTCCGTGAGTTTCCGG
AAGTCTTTACTTCCGATCTTTAAAATATTTCTGAGGAGCTTTTTTCTCGA
TTATCGGTGCACGGTGCAGAGTTCTagatcactgacctttatatatccct
gaaccaagctatatccgccatctttgatcgaaatttcttttgaattggta
cctgtaaagaagccat
Run BLAST on NCBI

transcript from alignment at sc0000020:882986..896347+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002474 ID=TCONS_00002474|Name=TCONS_00002474|organism=Clytia hemisphaerica|type=transcript|length=13362bp|location=Sequence derived from alignment at sc0000020:882986..896347+ (Clytia hemisphaerica)
aaaaaatgacaagaaactacaattttttcctctttttaagcagttttaac cgaatttaggggtggatcttcaaaagtcaaaagtttTGGAGATATATGTG CAAAGAATTTTGGCTCGGGAATGATTTGATCCATGAGAAAACAACGTCCG AAAATCACGATATTTTGATCCGAGCACGATTAACTACTGGACAAATTGTA GTATCAAGGTATGAGAGATTCACAGTTGCTAACGAATCACAATCATATCA AATGTATTTTGGTAAACTTATCAGTGGAATACACTCATTTGCAAACCTAA CCCTACTGATAAGGAATCTAAATGGAAGTAGTTTCCATACCCCTGACAGA GAAAGTAGAACAGGTTGTGCAGAGAGACATGGTTCTTTTTGGCATAACTC ATGCGCTGATTTTCACCCCAATAAATATTGGAGACCACGTTGGAATGAGT TTAGAATTGGACATCCGACGGGGGTGATAAAAGAAATTCAACTTTTAATT AGGCCTTCCAGTATGCCTTGAGATAGGAGGGAGCAAttgacgtgtttttt ataagaaccctGATCAGGCTTTCATATCGTGTCTTAATCCACGAATGGCA TCTTATTTATTCATATCTATATTAACCCTTAAATGTAGTTTTTTTTGTGT ACTTTATATTATGATTTTTGGTATTCTGGAAGAATGCATAACTGCTTTAA CGGATTTATTTTGATGAATAtctgaaaaaacgacgatttgaCGATTGTTC TTATCCGAACAACCATATTTTTTCTGAATCGCAATTTTCGATCACCTAAA GGCGGTTTTAACTGTGTAAATATACAAGTTAAATCTCGATTTGAATCAAT TAAATATTTAACTCAATAAAGTATGCCCAATTATTTTATCTCCCTAATAT ATCTTTGTAGGGAAATGGTGTTATTGATCTTCACGCGTCAAAGAGTAGAC CATTTCACCTTTAGGGTCTCGGATATTGTTGATCGTACATTTAATCGAGT TAAAAACTTAGTATCCTCAATCATTTTATCTCCCTAATATTTCTGTGTAG GGAAATGGTGTCATTGGTCTTCACGTGTCGAAGAGTACATCTACCCGATG GATCACAATCCCGAATATTCCTCCATCTTGGTTCCCAATGTATTGAACGA ACTTTTTAATCGATACCATTGCTAAACAGGGAAAGGTATGTACTTTCAAC GCTCATAActcgtccatataacgttgcatgttttttttaataagcaagtg tctgtccctattCCAGGCTCGCATCATGCTCAGCATTCTATTTtcctcaa acaatagagccctTGTTTAGGTATCAAAAACTGaacctgcatatgcttat agaacgttatgcttataaaagaaagacatgTAGATGAACTTTGAAACAGC TCTGGAACTCCCTTGAGTAGTCTCTGGTTTATAATTTCTCGAGATTCTAA GAAAATGTAGTTTCGGTTCGGAATAGTATGAAAGAATCCTATCTGTCGca gttaaattttaaaatattctgtTTGGTAACAAAGCTGATAGGGTTTTGTA TTTGACATATGATAAAGAATATGAGAATATCTGAGAGAATATTTTCACCA CCGAAATCAAGATTTCTTCACTTTCTCTCTTGTACGTCAGGCAGCTCTTT GATCGTAACTATAGTATTAAAATTCTAATCAGTCTACTATATAACTATTA TCCACAGCCAACTGATAATTTAGACCAATAAAGAATAAAAGCAAGTCCGA GAAAATTTATCAAGTCaagatattcaaaacaaaagaataaaatttcttGT CTTGATGAATGTTCTCGGACTTTTATGTATTAGTTATCGgacaaatgtct gataactggtttatcggtgacccaaaaatgCACATTatgcacttttgtag caaagtgacgttatattgctgctaccgctacaatgcagtaacatcttttc gtcaatttatatatatttttacacaataaattgaagttgagataagaatt gtttgatacttaaagtttcacgcaacttttcgtcacgatcttcagtcaaa aattctatACAAAAAATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNCTTTGGATTGGTTGGCTTATACGAAAGTTCGACGTTGTAGC CGCTTTCTTTCAACGCTTTCTCGTACGGTTTTTTGGCTTCGGTGAAGATA TGTTCGTTGGATGAGTGATTTGACAGTCGTTGTTCGATCGTTTTGGGTAT TTGCCTGATCACGTTTGGAGGGTGGTTTGATTGAGTATTTATATATTGAA GTTTGTTGTCTGGTTTCAGGTAAGGCTTGAATGAACCATCTTCAAGGTTA AGAGTAATATCTAAATAATTGACGATTGTCTTATTGCACTCAATAACGAT CTCTAAACCATCCCCGTACTCTCGGAATTTCGACTGCAAGTCCTTTTTGA CTCGTTCCAACTTGCTCCCCGTCTTGCATTTTACAACTGAAAGTCCGTCA TCACGATAAAGACCAAAGTTCTTTATGTCGTACGTTTCGCTTAACTTATG CTGAAGGTAAATGCCGACGAGCTCGCACACTTCCGCACCGTCGAACGCGC CCATTGTGACATCGAACAGACTACCTTTCTTTTTCATCCAGGCGGAACCG TCGCTAAAGCATAAAGATTTTCGAGCATGCTGAATTATTTTTACGTCTTC AGTTGAGATGCGTGTGATTGGTTTAGCGAATTTGATAGCGTCGGATAGTA GCTTTTTAGTTATTGAGGGATAGAAGTCCTTGATGTCAAAAACTACGAAC CTGTGCTGCTTTTTGTTCGGTATGGCTTTGAACCATTCGATAACTTCACT GGTGTTCTTCCATTGGTTGATTTCCAGGTGGGCTTTGAGATCGTTGTTCA CTCTGTCAAGGATCGATTTTGCGATACGGCCGATCTCGTTTTTGGCAGGA TTCAGTAAACGCACCTTTGGATTGTTTTGGAAGTTCTCCTTATGGTCTTT TAGGGTTATGAAAGCCTCATCTTCGCCGTTTGTCAGCATTCTGCCGAAGA CTTTCATGTCTTTAACGATTGATTTTCCGGCTGAATTGATTTTATGATGG ATGTTTTTGTTGACCTTTTTGTATGTCGATGTGACGGCGTTTGTCAACAG CTTGTCGTGTTCTTCTTTGGAAAGCTTATAGAGATTTGTCGTTTTATCAG CAAACGTTAGCGTTGTTTTCGTGTTTTTGATCGTTTTGATGTCGTTTCTC AGAGTTTTTTGAAACTTGTTCTGGTTTCCCCTGAATTTGATAGATTTCAC CATATCAAATAGGTCGTTTTCGAATGGGACCATTTCTTTTATCAAGGTTG GACAATTCAACGTTTTCATGCCGTACGTCTCTGGTCTTGGTTCATCGTTT GGTTGTTCGAGGAAATGTGCTCGCCATCTCATTCTTTTGATCACCATTTC GACTTTATCGATCAACTGGAGACGATAACTGTGCTGGGATGGTGTTGGTA TATTCTTGTAGGAGTAATCGAATTGTAGTTTCTCCATAACTTCGTATGTT GAATTTGATAGAGTGCTCAACTTTCGGAGCGTTCATATATTtttacaaga tatattgtacttttttaaccaatcagattgcagatactttttggatcgcc gataatcTTTTATATAATTATTAGACACATGAaggttttcatgttttttt tgttaagTTGCGTAATCTCCTTAGACtttgttatagtctaagacgaatca ctatctaagaaaaaagcccaaagccgaagaaaatttacaaacgggttttt ttgtcGAAAAAAGTTTACAGCCGGTATAGTTTGCCAgtcttcttcgaaac tctcccgccgatttttccCCGTataccgcctttactatcactgtaacgga cgataaagCGTCTAAACCTCCTCTATATTTTCAGGCTGCTCTTTTGATTG GTGAACAGGGGACAGCGAAGACaattatgatacaaagttacaTGAAACAT TATGACCCTGAAGTTCATCTTACCAAAAGATTCAACTTCTCTTCTGCTTC TACTCCAATGCATTTCCAGGTATGAaaaccttatcggggaaaaaatatTG TAGTTTTAATTagtcgggggaaaatttcgtcagggaaaaatttcgtcacc tagaggcattttcgtcacttttccccgaccaaatttacaattCAGTCAGT TCCACCCGACTAAATTGTTCAAATTAAATCGtctccttcactagctcgaa aaagatcttgtaattcgacgtttaaagcactagtTTCTGTAATTCAGGGT gtaaaaatttggatttgatATTTGGTTGGAGTgtgaaattttgagtaaaa ttttcGCTCGGGAACAAAAAAAtggggtaaaagttttggtcgggtgataa aatgtcggggagttatttcgtcaccccctcaaaattttcgtcactttccc ccgacatttttttccccgataaggtagtttcTCTTTCAATTGTCAAGTAC CGGGGTGTGCAACAAATaggtttctctctttgaaactaactttCTCGAAA TCGAAATATTTTAATAGAACCATTCcttttccattggaaagaagaaagat aaacttaaattttgattggtcTTTCGTTAAATTTGATCAACTAGATTTAA AATTATGcccaattgaataaaaaaagttactttcggagAGTACTCGAATA tgttgaaaatgaaagaaaaattttgtggcgcacccggtatattatCGACA GCCGAGGTTTGTCTGtgtttttctaaagatttttcTCCGCTTTTTGCGTT TTTATTACTATATATGGTGGCGTGTCTAATTAACGTTCTTTTCTCCGTCA TTTTTTTACGTTTTAGCGTACGATTGAAAGTTACGTGGACAAACGTATGG GAAGTACGTACGGTCCGGTGGCCGGTAAACAGATGTCCGTATTCATTGAT GATATCAACATGCCGGTCATTAATGAGTGGGGTGATCAGGTGAGGTTGTT TCATTGTTATTGTTTTATGCAGATCTTTACACAGAAGAACATCTATTTag cggacactctaaaaggcgggcCTGTCTCCACGATGGTGGAGATACTCCAC TGTGATAATATCCGTACGTGTCTAGAGCCTTTCTCTGCAGCGTTTTGCAT TTCGCTAGCGGATTAAGCTTGCCGTATATTTCTTTCCAGTGGTTATGCTT ATTTTTAACAGTTCATCATGAAAATTCTCATAAAAAGCATGTACTAAAGG ATATTctcagggctcgaaataacgatatttaggtggtcggacacattgtc cgatcaaaaattgatttgggtcggacatgtcctaagGCTTTTAANTAATA CaagcttctgatagaatttCACATTGATCAcaaagaagctaaacaaatgc caattaatggtcagaagcccatgatttttacttgaagcatgcttttgtgt aaataaagaagttactaattctatgtaaattgtaatttcttttggaaatt tcacaacgcctctgacaaattttttgaaggcaCTGAAAGTAATTaggtcg gacatgatgtccgactagaatcgatttgggtcggacatttcagcaattgg gtcggacaatgtccgatgtccgaccgttatttcgagccctgtatTCTACA TAAGTATTCTTGTGTTTCAGTGTCATATCAGGCACATGTTTTACATCAGa cccctattgttatattgtgttcgattttgtgctgaataaacaaaaaatag tttttctttcctttttgaaCCTTtattgctccacatccatgtcaattcaa tgtggaaaagcttgttggacctaccccggtggaggtcctataaattaacc tttgtccgtccgtccgttagttaccagcttttctcgagattggctcatta gttttttctgattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Naatttttcagctcaaaaaaagcatctttatcaataagaatcactattaa taaacatacatcaatgttcttagccaaattactcaattttttggagatgt ttttgtttttggttcgaaaggtttttttataagaaacaaacgactaattt taatagatcgtcactatttgtgttctgaatgattgtttaatggtcacgtc acgtagacatgggatcatcccccccaggaagatggggggggaattagatt ttggtgccaggggggaagtgaaaatttcaagcttgatggggggagaaagg cgaatagggggtatattcagtcctctacctagtggggggagtaataggat aaatacagaccttcctggtgtgtttgagcattcaggcttatgagcctgtc tttcCTTTCTTgggattttgagagtcttttttttgctatagcttgcgaat tgaggcgagtctggatcatcacttcgcaacccttatacgatacggctagg gggatttcccaattggggggagcacgaattttaaagacaggtggggggga aaggccagatgggggattttagctcatattaggggggaccaaaaagctgg aggacgccatggtagatatcaattataaacgtgttaaatgcataatccag gtaggtccatcaaagtatcacttgttgatTTAAAATTAATGAGTAAGCAT CAACTTAgtttaaaacaaaacctttaattataGATAACAAACGAAATCGT GCGTCAACTAATGAGCGATGGTGGTTTTTACAACCTTGATAAACCTGGTG ACTTCACCACAATTGTTGATATTCAATTCCTTGCCGCCATGATCCACCCG GGCGGTGGGCGTAAAGATATTCCAGAACGCTTAAAAAGACAGTTCTCTAT TTTCAATTGCACTCTGCCCTCTAACAATTCAATCGACAAGATCTTTGGTA CCTACCTTTAAATGCGCGGTCGGTTTCTAAGGGGACTGGTGATGAATTAA TAATACGTTGGGTTTAAGattagtgagtttatgtattcgagataaatcga gggggtggtataaagcaaagttgacatgtctccaaaatcactgtccactt tgctcgacgacggtaaaaacaccaaaataccgtcgtctgtttaggggagc aaaggcgatataaaGCCGTACATCagctatcgactttgttttgtatcatt tcacttaccgtcgccctcgatatcctccgatacataaactcggtagtatt aatgcaacgacttcagatGTCTTGGCGTCATTCCTTGCTAGTAAACTCGG ACCCAGTCTTTGCACGCTTTAAAGGTTGATAGGTATATTAAACAAGAAGC CTCTCAGTTAGTTTTGTAAATTTCAAATCTCTAATACCCTCTAATTTTGC TATCCTCACAGGTTTTCAAATTACTTGTAAAACATCTGCTTATTCTTCAT TCCAAACTAGATCCTCGTAGGGAAAATaatttccaatgcaatatcattcT ACTTAAGAAGTCATATTGCTTCCTGTCctctaccttaagtggataaattt tggcgtggatttaatttggcgatttgCCAAAACACGAtctttggcgggaa tttaatttggcgatagatcaatttcgtaaaatttggcggggatttaattt ggcgaattggaaattttgtcacactgaaatgggtgaaaattactcaaaaa tatactaaaaagttgtgatttttcacataattctctttttgttaaatttc gcggggatttaatttggcgaattggaaattttgtcacactgaaatgggtg aaaattactcaaaaatatactaaaaagttgtgatttttcacataattctc tttttgttaaatttcgcggggatttaatttggcgaattgccgaatttgga agttttggcgaggatttaatccccgccaaaatttatccacttaatgTAAT CCATCTTTGAAACAAAAGTGAGCTGCCCTTTTGAGGACGGTTCGaaacga tttggaataacccgtaGTTACACGTACTGTTCTATcacattttaataatt tttgtaataattttttcatttaccaGGTGTCATTCGTTGTGGTCATTTTT GCAAAGAGCGTGGTTTCACGGACGAAGTTAGAACTCTGGCAAATGATTTG GTTGCTTGCACAAGAAGGTTGTGGCAATATACTAAGGTTTGTTTGGTTCT ACTTTATAATGCCTGTCTTCAAAGAGACTGACGTATTTTCAAACCTAACT TTCGACAAACGCTACAAATTTTAACTGAtcataaaacaaataaaacacaA TTGGTTGGTTTTCCTCGTGTAGTGCTCAATCGTGATCCTTGTAAAACGAA AAATAATGTCTTGATCAATTACCCTTTAAAATATCGACCCGATGactgaa tttttaataaatcttttttccTTGTATAATTTTGATCTCCAGTTGACGCT CtccaattcgattttcaaagggaATTGAATTTTTGGAGTGAAtagaatag tagagcgtcgtttatgagagttttttgttgacAGTAACTTTCAATatcaa ataagggagcctatcaaatagtagaacgtcgattAAGAAAGCTTCAACCG TCAACTGAGTTTTTTTACTTACCGTAAGTCAACTCTAGGTCCAATGGTTG ATTCCACAATTGCGGAACTTAACAAAACATGAGAAACTTCTATAGCTTGC CCTACAGAATCTATCCGTTTTTATGGTTTTGTGGTTTTGTGATAATAATC TCTTCCCGCATTATTTTCCGTCTTTCTTTAGGTCAAAATGTTGCCAACGC cggcaaaatttcattacgTCTTTAACTTACGTGATTTATCACGTATTTGG CAAGGGATGCTTAACGCTGTCAGTGACGTCATCACAGAAACGTCCACGCT TTTGTCTCAATGGCAACACGAATGCACACGCGTTATTTGTGACCGCTTCG TGAATGAGATGGATAAGAGCTGGTTCAGGAAAGTTGCTGTACAGATATGT GATGAGGAGATTGGGGCTAGTCATGATTTGTCATGCTTGGAAGAGGAAGC TTACTTTGTTGATTTCTTGAGGTGAGTTAAGATCTGGACATTTCGTGCTA TGGAAATAAACCCTCCTTATTTCATCTAGCGGAGTGTTTGTGATTGTAAA TAGCTAAAAATCTCCCATTAAAGCTTAAAACAACTTTAAAGCTTGACAAA GTCTATCAAGGATAGTTACCAATAGGAAAGTTAACGTTAAATTTGAAAAG ATTCTCCTAATACATCTGATATCAGATTTCCATGATGGTAACCCCTCAAA GCATCCAATCTGATGTCTGACTTTCCATAGCCTTCTGATGGCTATATTGT CTTAGTTGGTTTGTTGGCAATACAGTGAGAAAGAGTtgtgccctccccta cctttgggtagatagctatcgaaaaaaGAGCCTTCTGGATTGCTCTTCCA CTCTTAAAAGCTTTTATCTTTCATTTCAAtcttatgtttcatttttcaga gATGCGCCAGAGCCCACAGGAGATGAACCAGATGATGCTGATTTCGAAGC TCCCAAGATTTATGAGCCCGTTACTATCTTGGAACCATTTTCGAAACATA TGACTCGAAGTATTATAGACGAAATCAATTTACCGGGTGATTGATAAAAA TCTCGGTTACTGATCCCTTTAGATGAACCAAAGCCTAAGTCTAATGCATT CACAGTTTTGTAAACATtccctttttcttttattgataaaaatctcGGTT ACTGACTCCTTAAGACCAACCAAAGTCTAGTCTAGTCTAATGCATTCACG GTTTCATAAACATctccttttctcttttttttttaaagattgaaagTATG GACAGCTTACGCGAGAGATTGTCACACTTCATGCATCAATATAATGAAAG CGTTCGTGGTTCTGGTCTTGATCTGGTTTTCTTTGAAGATGCTATCACCA GCTTGCTGAAGGTAAAGTTTGtcaagaaaattttaagtttaagcAACTTT AGGTTTCTGCTACCCAATATCAAAAGTGGAACACAACCCTAGCATGCGTT TAAAGaaactatttttttgttttgaaatagataaaaactttcaagaaaat gcatagtaagggtcgattttgcgcctaaatttggctaaattttctcttCA CTGTAATGTTCTAATTTTGAGACCCTAATTTTTTCCCGCCCAtacggtcg ttttcagatcggtTTTGGCCAGTAGTGTCAAATTTAAAATAGACataagt tgtataaaattttccGCTACtagcaaaaaccggggtctttccgtagaaaa tattacgtcatgaatatcatgaatcttattttcttttttctttctacaGA TTTCTCGTATCCTAGCAACGCCACGTGGCAATGCATTGTTGGTAGGCGTT GGAGGATCTGGTAAACAGAGTTTGACAAGACTCGCTTCTTTTATTGCTGG TTATAAAACATTCCAAATCACTATCACAAGGTCCGTGAGTTTCCGGAAGT CTTTACTTCCGATCTTTAAAATATTTCTGAGGAGCTTTTTTCTCGATTAT CGGTGCACGGTGCAGAGTTCTagatcactgacctttatatatccctgaac caagctatatccgccatctttgatcgaaatttcttttgaattggtacctg taaagaagccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001322XLOC_001322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002474-exon-sc0000020-1491911889:882986..884170TCONS_00002474-exon-sc0000020-1491911889:882986..884170Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:882986..884170TCONS_00002474-exon-sc0000020-1510915933:882986..884170Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:882986..884170TCONS_00002474-exon-sc0000020-1575043694:882986..884170Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:887720..887854TCONS_00002474-exon-sc0000020-1491911889:887720..887854Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:887720..887854TCONS_00002474-exon-sc0000020-1510915933:887720..887854Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:887720..887854TCONS_00002474-exon-sc0000020-1575043694:887720..887854Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:888652..888774TCONS_00002474-exon-sc0000020-1491911889:888652..888774Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:888652..888774TCONS_00002474-exon-sc0000020-1510915933:888652..888774Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:888652..888774TCONS_00002474-exon-sc0000020-1575043694:888652..888774Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:893762..893871TCONS_00002474-exon-sc0000020-1491911889:893762..893871Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:893762..893871TCONS_00002474-exon-sc0000020-1510915933:893762..893871Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:893762..893871TCONS_00002474-exon-sc0000020-1575043694:893762..893871Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:894467..894756TCONS_00002474-exon-sc0000020-1491911889:894467..894756Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:894467..894756TCONS_00002474-exon-sc0000020-1510915933:894467..894756Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:894467..894756TCONS_00002474-exon-sc0000020-1575043694:894467..894756Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:895185..895321TCONS_00002474-exon-sc0000020-1491911889:895185..895321Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:895185..895321TCONS_00002474-exon-sc0000020-1510915933:895185..895321Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:895185..895321TCONS_00002474-exon-sc0000020-1575043694:895185..895321Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:895524..895646TCONS_00002474-exon-sc0000020-1491911889:895524..895646Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:895524..895646TCONS_00002474-exon-sc0000020-1510915933:895524..895646Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:895524..895646TCONS_00002474-exon-sc0000020-1575043694:895524..895646Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1491911889:896035..896347TCONS_00002474-exon-sc0000020-1491911889:896035..896347Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1510915933:896035..896347TCONS_00002474-exon-sc0000020-1510915933:896035..896347Clytia hemisphaericaexon
TCONS_00002474-exon-sc0000020-1575043694:896035..896347TCONS_00002474-exon-sc0000020-1575043694:896035..896347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:882986..896347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0590667 0.0257262 0.117592 0.0791413 0.0356298 0.045359 0 0.0708139 0.19389 0.0639083 0 0 0 0 0 0 0 0 0 0 0.177642 0.612372 0 0 0 0
Blast
BLAST of TCONS_00002474 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 5.722e-75
Identity = 86/156 (55.13%), Postives = 109/156 (69.87%), Query Frame = 3
Query: 1443 GVIRCGHFCKERGFTDEVRTLANDLVACTRRLWQYTKVKMLPTPAKFHYVFNLRDLSRIWQGMLNAVSDVITETSTLLSQWQHECTRVICDRFVNEMDKSWFRKVAVQICDEEIGASHDLSCLEEEAYFVDFLRDAPEPTGDEPDDADFEAPKIYE 1910
            G+I CG+F   R F  ++  +  +LV+  R LWQ+TKVKMLPTP+KFHY+FNLRDLSRIWQGML   ++      TLLS ++HEC+RVI DRF+   D+ WF     +  +E IG S   SC+  E YFVDFLR+ PEPTGDEP+D+ FE PKIYE
Sbjct: 2608 GIIGCGYFDPCRSFKPQICEMIVNLVSVGRVLWQWTKVKMLPTPSKFHYIFNLRDLSRIWQGMLTIKAEECASIPTLLSLFKHECSRVIADRFITPEDEQWFNAHLTRAVEENIG-SDAASCILPEPYFVDFLREMPEPTGDEPEDSVFEVPKIYE 2762          

HSP 2 Score: 119.783 bits (299), Expect = 5.722e-75
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = 1
Query: 1972 IYRI-ESMDSLRERLSHFMHQYNESVRGSGLDLVFFEDAITSLLKISRILATPRGNALLVGVGGSGKQSLTRLASFIAGYKTFQITITRS 2238
            IY +  S D L E+L  +  Q+NE +RG+ LDLVFF+DA+T L+KISRI+ T  GNALLVGVGGSGKQSL+RLASFIAGY+ FQIT+TRS
Sbjct: 2760 IYELMPSFDFLAEKLQFYQRQFNEIIRGTSLDLVFFKDAMTHLIKISRIIRTSCGNALLVGVGGSGKQSLSRLASFIAGYQIFQITLTRS 2849          

HSP 3 Score: 174.481 bits (441), Expect = 6.945e-52
Identity = 78/105 (74.29%), Postives = 92/105 (87.62%), Query Frame = 1
Query: 1147 TNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKQMSVFIDDINMPVINEWGDQVSFVVV 1461
            TNFLIDTIAKQ KA LL GEQGTAKT+M+++Y+K YDPEV L+K  NFSSA+ PM FQRTIESYVDKR+GSTYGP  G++M+VFIDDINMPVINEWGDQ++  +V
Sbjct: 2438 TNFLIDTIAKQHKAVLLTGEQGTAKTVMVKAYLKKYDPEVQLSKSLNFSSATEPMMFQRTIESYVDKRIGSTYGPPGGRKMTVFIDDINMPVINEWGDQITNEIV 2542          

HSP 4 Score: 50.0618 bits (118), Expect = 6.945e-52
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 3
Query: 1050 GKWCHWSSRVEEYIYPMDHNPEYSSILVPNVLN 1148
            G W HW+ +++ Y YP D  PEYSSILVPNV N
Sbjct: 2403 GDWEHWNKKLQPYYYPTDSIPEYSSILVPNVDN 2435          
The following BLAST results are available for this feature:
BLAST of TCONS_00002474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH85.722e-7555.13Dynein heavy chain 8, axonemal OS=Homo sapiens GN=... [more]
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