TCONS_00002470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002470
Unique NameTCONS_00002470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length804

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002470 ID=TCONS_00002470|Name=TCONS_00002470|organism=Clytia hemisphaerica|type=transcript|length=804bp
aacatcttaagaacatgcccaggaaaaaaatgacaagaaactacaatttt
ttcctctttttaagcagttttaaccgaatttaggggtggatcttcaaaag
tcaaaagtttTGGAGATATATGTGCAAAGAATTTTGGCTCGGGAATGATT
TGATCCATGAGAAAACAACGTCCGAAAATCACGATATTTTGATCCGAGCA
CGATTAACTACTGGACAAATTGTAGTATCAAGGGAAATGGTGTCATTGGT
CTTCACGTGTCGAAGAGTACATCTACCCGATGGATCACAATCCCGAATAT
TCCTCCATCTTGGTTCCCAATGTATTGAACGAACTTTTTAATCGATACCA
TTGCTAAACAGGGAAAGGCTGCTCTTTTGATTGGTGAACAGGGGACAGCG
AAGACaattatgatacaaagttacaTGAAACATTATGACCCTGAAGTTCA
TCTTACCAAAAGATTCAACTTCTCTTCTGCTTCTACTCCAATGCATTTCC
AGCGTACGATTGAAAGTTACGTGGACAAACGTATGGGAAGTACGTACGGT
CCGGTGGCCGGTAAACAGATGTCCGTATTCATTGATGATATCAACATGCC
GGTCATTAATGAGTGGGGTGATCAGATAACAAACGAAATCGTGCGTCAAC
TAATGAGCGATGGTGGTTTTTACAACCTTGATAAACCTGGTGACTTCACC
ACAATTGTTGATATTCAATTCCTTGCCGCCATGATCCACCCGGGCGGTGG
GCGTAAAGATATTCCAGAACGCTTAAAAAGACAGTTCTCTATTTTCAATT
GCAC
Run BLAST on NCBI

transcript from alignment at sc0000020:882962..892597+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002470 ID=TCONS_00002470|Name=TCONS_00002470|organism=Clytia hemisphaerica|type=transcript|length=9636bp|location=Sequence derived from alignment at sc0000020:882962..892597+ (Clytia hemisphaerica)
aacatcttaagaacatgcccaggaaaaaaatgacaagaaactacaatttt
ttcctctttttaagcagttttaaccgaatttaggggtggatcttcaaaag
tcaaaagtttTGGAGATATATGTGCAAAGAATTTTGGCTCGGGAATGATT
TGATCCATGAGAAAACAACGTCCGAAAATCACGATATTTTGATCCGAGCA
CGATTAACTACTGGACAAATTGTAGTATCAAGGTATGAGAGATTCACAGT
TGCTAACGAATCACAATCATATCAAATGTATTTTGGTAAACTTATCAGTG
GAATACACTCATTTGCAAACCTAACCCTACTGATAAGGAATCTAAATGGA
AGTAGTTTCCATACCCCTGACAGAGAAAGTAGAACAGGTTGTGCAGAGAG
ACATGGTTCTTTTTGGCATAACTCATGCGCTGATTTTCACCCCAATAAAT
ATTGGAGACCACGTTGGAATGAGTTTAGAATTGGACATCCGACGGGGGTG
ATAAAAGAAATTCAACTTTTAATTAGGCCTTCCAGTATGCCTTGAGATAG
GAGGGAGCAAttgacgtgttttttataagaaccctGATCAGGCTTTCATA
TCGTGTCTTAATCCACGAATGGCATCTTATTTATTCATATCTATATTAAC
CCTTAAATGTAGTTTTTTTTGTGTACTTTATATTATGATTTTTGGTATTC
TGGAAGAATGCATAACTGCTTTAACGGATTTATTTTGATGAATAtctgaa
aaaacgacgatttgaCGATTGTTCTTATCCGAACAACCATATTTTTTCTG
AATCGCAATTTTCGATCACCTAAAGGCGGTTTTAACTGTGTAAATATACA
AGTTAAATCTCGATTTGAATCAATTAAATATTTAACTCAATAAAGTATGC
CCAATTATTTTATCTCCCTAATATATCTTTGTAGGGAAATGGTGTTATTG
ATCTTCACGCGTCAAAGAGTAGACCATTTCACCTTTAGGGTCTCGGATAT
TGTTGATCGTACATTTAATCGAGTTAAAAACTTAGTATCCTCAATCATTT
TATCTCCCTAATATTTCTGTGTAGGGAAATGGTGTCATTGGTCTTCACGT
GTCGAAGAGTACATCTACCCGATGGATCACAATCCCGAATATTCCTCCAT
CTTGGTTCCCAATGTATTGAACGAACTTTTTAATCGATACCATTGCTAAA
CAGGGAAAGGTATGTACTTTCAACGCTCATAActcgtccatataacgttg
catgttttttttaataagcaagtgtctgtccctattCCAGGCTCGCATCA
TGCTCAGCATTCTATTTtcctcaaacaatagagccctTGTTTAGGTATCA
AAAACTGaacctgcatatgcttatagaacgttatgcttataaaagaaaga
catgTAGATGAACTTTGAAACAGCTCTGGAACTCCCTTGAGTAGTCTCTG
GTTTATAATTTCTCGAGATTCTAAGAAAATGTAGTTTCGGTTCGGAATAG
TATGAAAGAATCCTATCTGTCGcagttaaattttaaaatattctgtTTGG
TAACAAAGCTGATAGGGTTTTGTATTTGACATATGATAAAGAATATGAGA
ATATCTGAGAGAATATTTTCACCACCGAAATCAAGATTTCTTCACTTTCT
CTCTTGTACGTCAGGCAGCTCTTTGATCGTAACTATAGTATTAAAATTCT
AATCAGTCTACTATATAACTATTATCCACAGCCAACTGATAATTTAGACC
AATAAAGAATAAAAGCAAGTCCGAGAAAATTTATCAAGTCaagatattca
aaacaaaagaataaaatttcttGTCTTGATGAATGTTCTCGGACTTTTAT
GTATTAGTTATCGgacaaatgtctgataactggtttatcggtgacccaaa
aatgCACATTatgcacttttgtagcaaagtgacgttatattgctgctacc
gctacaatgcagtaacatcttttcgtcaatttatatatatttttacacaa
taaattgaagttgagataagaattgtttgatacttaaagtttcacgcaac
ttttcgtcacgatcttcagtcaaaaattctatACAAAAAATTCNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGATTGGTTGGCT
TATACGAAAGTTCGACGTTGTAGCCGCTTTCTTTCAACGCTTTCTCGTAC
GGTTTTTTGGCTTCGGTGAAGATATGTTCGTTGGATGAGTGATTTGACAG
TCGTTGTTCGATCGTTTTGGGTATTTGCCTGATCACGTTTGGAGGGTGGT
TTGATTGAGTATTTATATATTGAAGTTTGTTGTCTGGTTTCAGGTAAGGC
TTGAATGAACCATCTTCAAGGTTAAGAGTAATATCTAAATAATTGACGAT
TGTCTTATTGCACTCAATAACGATCTCTAAACCATCCCCGTACTCTCGGA
ATTTCGACTGCAAGTCCTTTTTGACTCGTTCCAACTTGCTCCCCGTCTTG
CATTTTACAACTGAAAGTCCGTCATCACGATAAAGACCAAAGTTCTTTAT
GTCGTACGTTTCGCTTAACTTATGCTGAAGGTAAATGCCGACGAGCTCGC
ACACTTCCGCACCGTCGAACGCGCCCATTGTGACATCGAACAGACTACCT
TTCTTTTTCATCCAGGCGGAACCGTCGCTAAAGCATAAAGATTTTCGAGC
ATGCTGAATTATTTTTACGTCTTCAGTTGAGATGCGTGTGATTGGTTTAG
CGAATTTGATAGCGTCGGATAGTAGCTTTTTAGTTATTGAGGGATAGAAG
TCCTTGATGTCAAAAACTACGAACCTGTGCTGCTTTTTGTTCGGTATGGC
TTTGAACCATTCGATAACTTCACTGGTGTTCTTCCATTGGTTGATTTCCA
GGTGGGCTTTGAGATCGTTGTTCACTCTGTCAAGGATCGATTTTGCGATA
CGGCCGATCTCGTTTTTGGCAGGATTCAGTAAACGCACCTTTGGATTGTT
TTGGAAGTTCTCCTTATGGTCTTTTAGGGTTATGAAAGCCTCATCTTCGC
CGTTTGTCAGCATTCTGCCGAAGACTTTCATGTCTTTAACGATTGATTTT
CCGGCTGAATTGATTTTATGATGGATGTTTTTGTTGACCTTTTTGTATGT
CGATGTGACGGCGTTTGTCAACAGCTTGTCGTGTTCTTCTTTGGAAAGCT
TATAGAGATTTGTCGTTTTATCAGCAAACGTTAGCGTTGTTTTCGTGTTT
TTGATCGTTTTGATGTCGTTTCTCAGAGTTTTTTGAAACTTGTTCTGGTT
TCCCCTGAATTTGATAGATTTCACCATATCAAATAGGTCGTTTTCGAATG
GGACCATTTCTTTTATCAAGGTTGGACAATTCAACGTTTTCATGCCGTAC
GTCTCTGGTCTTGGTTCATCGTTTGGTTGTTCGAGGAAATGTGCTCGCCA
TCTCATTCTTTTGATCACCATTTCGACTTTATCGATCAACTGGAGACGAT
AACTGTGCTGGGATGGTGTTGGTATATTCTTGTAGGAGTAATCGAATTGT
AGTTTCTCCATAACTTCGTATGTTGAATTTGATAGAGTGCTCAACTTTCG
GAGCGTTCATATATTtttacaagatatattgtacttttttaaccaatcag
attgcagatactttttggatcgccgataatcTTTTATATAATTATTAGAC
ACATGAaggttttcatgttttttttgttaagTTGCGTAATCTCCTTAGAC
tttgttatagtctaagacgaatcactatctaagaaaaaagcccaaagccg
aagaaaatttacaaacgggtttttttgtcGAAAAAAGTTTACAGCCGGTA
TAGTTTGCCAgtcttcttcgaaactctcccgccgatttttccCCGTatac
cgcctttactatcactgtaacggacgataaagCGTCTAAACCTCCTCTAT
ATTTTCAGGCTGCTCTTTTGATTGGTGAACAGGGGACAGCGAAGACaatt
atgatacaaagttacaTGAAACATTATGACCCTGAAGTTCATCTTACCAA
AAGATTCAACTTCTCTTCTGCTTCTACTCCAATGCATTTCCAGGTATGAa
aaccttatcggggaaaaaatatTGTAGTTTTAATTagtcgggggaaaatt
tcgtcagggaaaaatttcgtcacctagaggcattttcgtcacttttcccc
gaccaaatttacaattCAGTCAGTTCCACCCGACTAAATTGTTCAAATTA
AATCGtctccttcactagctcgaaaaagatcttgtaattcgacgtttaaa
gcactagtTTCTGTAATTCAGGGTgtaaaaatttggatttgatATTTGGT
TGGAGTgtgaaattttgagtaaaattttcGCTCGGGAACAAAAAAAtggg
gtaaaagttttggtcgggtgataaaatgtcggggagttatttcgtcaccc
cctcaaaattttcgtcactttcccccgacatttttttccccgataaggta
gtttcTCTTTCAATTGTCAAGTACCGGGGTGTGCAACAAATaggtttctc
tctttgaaactaactttCTCGAAATCGAAATATTTTAATAGAACCATTCc
ttttccattggaaagaagaaagataaacttaaattttgattggtcTTTCG
TTAAATTTGATCAACTAGATTTAAAATTATGcccaattgaataaaaaaag
ttactttcggagAGTACTCGAATAtgttgaaaatgaaagaaaaattttgt
ggcgcacccggtatattatCGACAGCCGAGGTTTGTCTGtgtttttctaa
agatttttcTCCGCTTTTTGCGTTTTTATTACTATATATGGTGGCGTGTC
TAATTAACGTTCTTTTCTCCGTCATTTTTTTACGTTTTAGCGTACGATTG
AAAGTTACGTGGACAAACGTATGGGAAGTACGTACGGTCCGGTGGCCGGT
AAACAGATGTCCGTATTCATTGATGATATCAACATGCCGGTCATTAATGA
GTGGGGTGATCAGGTGAGGTTGTTTCATTGTTATTGTTTTATGCAGATCT
TTACACAGAAGAACATCTATTTagcggacactctaaaaggcgggcCTGTC
TCCACGATGGTGGAGATACTCCACTGTGATAATATCCGTACGTGTCTAGA
GCCTTTCTCTGCAGCGTTTTGCATTTCGCTAGCGGATTAAGCTTGCCGTA
TATTTCTTTCCAGTGGTTATGCTTATTTTTAACAGTTCATCATGAAAATT
CTCATAAAAAGCATGTACTAAAGGATATTctcagggctcgaaataacgat
atttaggtggtcggacacattgtccgatcaaaaattgatttgggtcggac
atgtcctaagGCTTTTAANTAATACaagcttctgatagaatttCACATTG
ATCAcaaagaagctaaacaaatgccaattaatggtcagaagcccatgatt
tttacttgaagcatgcttttgtgtaaataaagaagttactaattctatgt
aaattgtaatttcttttggaaatttcacaacgcctctgacaaattttttg
aaggcaCTGAAAGTAATTaggtcggacatgatgtccgactagaatcgatt
tgggtcggacatttcagcaattgggtcggacaatgtccgatgtccgaccg
ttatttcgagccctgtatTCTACATAAGTATTCTTGTGTTTCAGTGTCAT
ATCAGGCACATGTTTTACATCAGacccctattgttatattgtgttcgatt
ttgtgctgaataaacaaaaaatagtttttctttcctttttgaaCCTTtat
tgctccacatccatgtcaattcaatgtggaaaagcttgttggacctaccc
cggtggaggtcctataaattaacctttgtccgtccgtccgttagttacca
gcttttctcgagattggctcattagttttttctgattNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNaatttttcagctcaaaaaaagcatc
tttatcaataagaatcactattaataaacatacatcaatgttcttagcca
aattactcaattttttggagatgtttttgtttttggttcgaaaggttttt
ttataagaaacaaacgactaattttaatagatcgtcactatttgtgttct
gaatgattgtttaatggtcacgtcacgtagacatgggatcatccccccca
ggaagatggggggggaattagattttggtgccaggggggaagtgaaaatt
tcaagcttgatggggggagaaaggcgaatagggggtatattcagtcctct
acctagtggggggagtaataggataaatacagaccttcctggtgtgtttg
agcattcaggcttatgagcctgtctttcCTTTCTTgggattttgagagtc
ttttttttgctatagcttgcgaattgaggcgagtctggatcatcacttcg
caacccttatacgatacggctagggggatttcccaattggggggagcacg
aattttaaagacaggtgggggggaaaggccagatgggggattttagctca
tattaggggggaccaaaaagctggaggacgccatggtagatatcaattat
aaacgtgttaaatgcataatccaggtaggtccatcaaagtatcacttgtt
gatTTAAAATTAATGAGTAAGCATCAACTTAgtttaaaacaaaaccttta
attataGATAACAAACGAAATCGTGCGTCAACTAATGAGCGATGGTGGTT
TTTACAACCTTGATAAACCTGGTGACTTCACCACAATTGTTGATATTCAA
TTCCTTGCCGCCATGATCCACCCGGGCGGTGGGCGTAAAGATATTCCAGA
ACGCTTAAAAAGACAGTTCTCTATTTTCAATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001322XLOC_001322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002470-exon-sc0000020-1491911889:882962..883193TCONS_00002470-exon-sc0000020-1491911889:882962..883193Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1510915933:882962..883193TCONS_00002470-exon-sc0000020-1510915933:882962..883193Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1575043694:882962..883193TCONS_00002470-exon-sc0000020-1575043694:882962..883193Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1491911889:884036..884170TCONS_00002470-exon-sc0000020-1491911889:884036..884170Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1510915933:884036..884170TCONS_00002470-exon-sc0000020-1510915933:884036..884170Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1575043694:884036..884170TCONS_00002470-exon-sc0000020-1575043694:884036..884170Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1491911889:887720..887854TCONS_00002470-exon-sc0000020-1491911889:887720..887854Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1510915933:887720..887854TCONS_00002470-exon-sc0000020-1510915933:887720..887854Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1575043694:887720..887854TCONS_00002470-exon-sc0000020-1575043694:887720..887854Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1491911889:888652..888774TCONS_00002470-exon-sc0000020-1491911889:888652..888774Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1510915933:888652..888774TCONS_00002470-exon-sc0000020-1510915933:888652..888774Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1575043694:888652..888774TCONS_00002470-exon-sc0000020-1575043694:888652..888774Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1491911889:892419..892597TCONS_00002470-exon-sc0000020-1491911889:892419..892597Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1510915933:892419..892597TCONS_00002470-exon-sc0000020-1510915933:892419..892597Clytia hemisphaericaexon
TCONS_00002470-exon-sc0000020-1575043694:892419..892597TCONS_00002470-exon-sc0000020-1575043694:892419..892597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:882962..892597 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.136499	0.0263275	0.193304	0.20011	0	0.233627	0	0	0	0.792168	0	0	0.288049	0	0	0	0	0.1349	0	0	0	0	0	0.147422	0.61189	0	0.144519	0	0
Blast
[Close]
BLAST of TCONS_00002470 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 2.547e-86
Identity = 125/158 (79.11%), Postives = 143/158 (90.51%), Query Frame = 2 
Query:  329 TNFLIDTIAKQGKAALLIGEQGTAKTIMIQSYMKHYDPEVHLTKRFNFSSASTPMHFQRTIESYVDKRMGSTYGPVAGKQMSVFIDDINMPVINEWGDQITNEIVRQLMSDGGFYNLDKPGDFTTIVDIQFLAAMIHPGGGRKDIPERLKRQFSIFNC 802
            T+FLI TIAKQGKA LLIGEQGTAKT++I+ +M  YDPE H+ K  NFSSA+TP+ FQRTIESYVDKRMG+TYGP AGK+M+VFIDD+NMP+INEWGDQ+TNEIVRQLM   GFYNL+KPG+FT+IVDIQFLAAMIHPGGGR DIP+RLKRQFSIFNC
Sbjct: 2572 TDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIVRQLMEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNC 2729

HSP 2 Score: 56.225 bits (134), Expect = 2.547e-86
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  232 GKWCHWSSRVEEYIYPMDHNPEYSSILVPNVLN 330
            G W HW++R +EY+YP D  PEY SILVPNV N
Sbjct: 2537 GTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDN 2569
The following BLAST results are available for this feature:
BLAST of TCONS_00002470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH52.547e-8679.11Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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