TCONS_00002469 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002469
Unique NameTCONS_00002469
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002469 ID=TCONS_00002469|Name=TCONS_00002469|organism=Clytia hemisphaerica|type=transcript|length=1710bp
TCTCAGTCCAGAGGTGATGAAAGATGAAAGTATTGATCAAGTTTTCCAAG
ATGTCCAAGAGGGGTTTTACTCACTGGTATACGCTTGTCCAGAAAGCCTT
TTACAGAACAAAAGATGGAGAAAACTAATTTCAAGTGATGAGTTTCGTAG
TCATTGTATTGGTATAGTTATTGACGAAGCCCATGTTGTTGTTTCTTGGT
TAGTATGTGGTCTTTCATTTCTTAGTTTAACCTGCTTAAATCAATTTAGT
GTCCAGCTTTTTTACCACAGTTGAAGGTAAATTCTTTGAAAACCACTAAT
AATTCCAACTTATTCTAATGATAATCTCAAAACTAGCAATTTTGCTTCAA
TATTATTTAGAGACTTGCTATTATTTAAAGCTATGAAAGCTTTAAAACTT
CTTAATATGAAATTTGAATATACTACAGGGGTTTAAGCACTGAAAAGAAG
AAGCCATTCAGAAAATGGTATGGAGCAATTCATGAATTTCAAGCACTCCT
TGGTAAAGATGTGCGCTATATCCTTGTAACAGCAACAGCAACCAAGGaaa
cagaaaacaaaatttttttgttgcttgGACTAAACCACAGTGACTTTTAC
ATTATTTACAAGCAcccaaacaaaaacaacatttaCTATAGTGCCATTGA
GGTAGCAAAAGGACAAATTATTGAATGTTTTGGAAATCTGATCAGAGAGC
TGGAAGAAAAAAAGACAGACACAGAGAGGACAATTATCTATGTTCAAACC
AAACACCAGGCAACAACAATTTTCAACAGCATGTGCTTTGAACTGGGGGA
TAATCTTTATCACGAAACAGTACGACCACAGAATAGATTGATTGAGATGT
TCCATTCAGTAACCCCGTCTAGTGTTAAAAAACATGTTGTGAAAGAGATG
AGGAAAGCCAAGAGTCATCTGAGATGTGTAATTTGCACTTCTGCATTTGG
AATGGGTATTGATGCTCAAGAGGTGCTTTCATTTTGGTCCATCCCTCACC
ATGGAAGGGTTTATTCAAGAAAGTGGCAGAATCGGTCGCAATGGAAAACA
GAGTACCAGTATTTTACTCTACAACAGCATTCTACAGGGTCACTGCTCTC
TAGAAATGAAAGATTTCATTGGTACTAAATCATGTCGAAGAGAGAAATGC
ATGTCAAAGTTCCAGGGATCCTATTCACCTCCAACAAGAATGTGTCTTTG
TTGCGATTTGTGCTTTTTGAAATGTAGTTGTGGTGACTGCTTTAAGCCAA
GATTGAAAGCTCCCACAAAGGAATATTCATGCACACTTCGACCGGTCTCA
CAGGATGAAAGAAGTCAAGTACGTGGTCTCTTAGAGGATTATTCtgaaca
aaattttcagaagGTCAGGCAGGCAGTTAAACAGGTCTCTCTACCAATAA
TGTATTTTGAATTCAGACATTTCCACATTAATCAAATAATGGAAAATATC
AGAAAGATTTTTACAATCAAAGATGTTTATGGTAAAATTGAGATCTGGAG
AAGATGTCATGCTGTGgcaattttgaacatttttcaagAGGTTTTTGGGG
ACGTTGAAATGGTGGATAATGAAGAAAGCAAGCAATCGCATGAAATTTCA
GTGGAGGTTGATCCCAACTGGTTTTCCATCATAAATGACACTAGTTTTCA
AAACCAGATATCAGAATCCATGTTTTCTAAACTTACAGTGACCATGGAAG
ATGAATGTCT
Run BLAST on NCBI

protein sequence of TCONS_00002469-protein

>TCONS_00002469-protein ID=TCONS_00002469-protein|Name=TCONS_00002469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MLKRCFHFGPSLTMEGFIQESGRIGRNGKQSTSILLYNSILQGHCSLEMK
DFIGTKSCRREKCMSKFQGSYSPPTRMCLCCDLCFLKCSCGDCFKPRLKA
PTKEYSCTLRPVSQDERSQVRGLLEDYSEQNFQKVRQAVKQVSLPIMYFE
FRHFHINQIMENIRKIFTIKDVYGKIEIWRRCHAVAILNIFQEVFGDVEM
VDNEESKQSHEISVEVDPNWFSIINDTSFQNQISESMFSKLTVTMEDEC
Run BLAST on NCBI

transcript from alignment at sc0000020:856863..859765+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002469 ID=TCONS_00002469|Name=TCONS_00002469|organism=Clytia hemisphaerica|type=transcript|length=2903bp|location=Sequence derived from alignment at sc0000020:856863..859765+ (Clytia hemisphaerica)
TCTCAGTCCAGAGGTGATGAAAGATGAAAGTATTGATCAAGTTTTCCAAG
GTAGGTATTATTCAATCAACATGACTTTCAGCATTTCGCGATTGATGGCG
ATCATGTACCGAAGGCTCCtcctttcgatagctatctacccgaaggtagg
ggagggcgccactctttctccctggatttctccacttacccttgatcctt
ctcttagttgctgagcatcaaaNTCaaacagagaggcatcaagtaccatt
ttgggaatctttggtatgacccggctgggggttgagcccacaaccttgcg
aaccgtagccggatgctctacaactgtactacggtcgctgtATTTATATA
TCCAATAATGATGCGACCATTTTGAATGGTATGCAAAATAGGAACAATTG
CTAACATGACATGCTATTTTATTAGATTGGCTACCTCTTGCTAACAATAA
TTGCCTGACGTTCTAATATTAGCCATAAAAATGTCAATGTTTGAGATGAT
TGTAAATCTACCAAAACACACAAAATCTTTTGtggatttgatatttttct
ggaATCACCATATTTTCACTCTTTTTTGTAACCTATAGACTAGTAATTGA
CAATAACTCTTCAAATCTAGATGTCCAAGAGGGGTTTTACTCACTGGTAT
ACGCTTGTCCAGAAAGCCTTTTACAGAACAAAAGATGGAGAAAACTAATT
TCAAGTGATGAGTTTCGTAGTCATTGTATTGGTATAGTTATTGACGAAGC
CCATGTTGTTGTTTCTTGGTTAGTATGTGGTCTTTCATTTCTTAGTTTAA
CCTGCTTAAATCAATTTAGTGTCCAGCTTTTTTACCACAGTTGAAGGTAA
ATTCTTTGAAAACCACTAATAATTCCAACTTATTCTAATGATAATCTCAA
AACTAGCAATTTTGCTTCAATATTATTTAGAGACTTGCTATTATTTAAAG
CTATGAAAGCTTTAAAACTTCTTAATATGAAATTTGAATATACTACAGGG
GTTTAAGCACTGAAAAGAAGAAGCCATTCAGAAAATGGTATGGAGCAATT
CATGAATTTCAAGCACTCCTTGGTAAAGATGTGCGCTATATCCTTGTAAC
AGCAACAGCAACCAAGGaaacagaaaacaaaatttttttgttgcttgGAC
TAAACCACAGTGACTTTTACATTATTTACAAGCAcccaaacaaaaacaac
atttaCTATAGTGCCATTGAGGTAGCAAAAGGACAAATTATTGAATGTTT
TGGAAATCTGATCAGAGAGCTGGAAGAAAAAAAGACAGACACAGAGAGGA
CAATTATCTATGTTCAAACCAAACACCAGGCAACAACAATTTTCAACAGC
ATGTGCTTTGAACTGGGGGATAATCTTTATCACGAAACAGTACGACCACA
GAATAGATTGATTGAGATGTTCCATTCAGTAACCCCGTCTAGTGTTAAAA
AACATGTTGTGAAAGAGATGAGGAAAGCCAAGAGTCATCTGAGATGTGTA
ATTTGCACTTCTGCATTTGGAATGGGTATTGATGCTCAAGAGGTCAATAG
GTGCTTTCATTTTGGTCCATCCCTCACCATGGAAGGGTTTATTCAAGNTT
CAAACCAAACACCAGGCAACAACAATTTTCAACAGCATGTGTTTTGAACT
GGGGGATAATCTTTATCACGAAACAGTACGACCACAGAATAGATTGATTG
AAATGTTCCATTCAGTAACCCCGTCTAGTGTTAAAAAACATGTTGTGAAA
GAGATGAGGAAAGCCAAGAGTCATCTGAGATGTGTAATTTGCACTTCTGC
ATTTGGAATGGGTATTGATGCTCAAGAGGTGAATAGGTGCTTTCATTTTG
GTCCATCCCTCACCATGGAAGGGTTTATTCAAGAAAGTGGCAGAATCGGT
CGCAATGGAAAACAGAGTACCAGTATTTTACTCTACAACAGCATTCTACA
GGGTAATTTTCCATTGAATATATATTTCAAAAGATCATAGCTTAAGGAAA
CAATTTTTGCAGGGACTAAATTTCTGCAGCGACTAAATTTTTAGGTGtct
taattttaaattttttgcagAATCTAATTTTGTGGATTTTCAGTGTTTCA
GAAAATTACTGCCGTTCTGTAAATTGTTAGCCAAATTGCTtttcttattt
gaaaaatttagcagTCCTAAATTTTGTGGATAGAATCACGGTTGTTCTCC
TTGCTGTAAGATAGGAAGGCTTAATTTCTAAAAAGCTAAGAACTCACAGT
ATTTTAAATCAAATGTAACTTCAAATTTAAGGTCACTGCTCTCTAGAAAT
GAAAGATTTCATTGGTACTAAATCATGTCGAAGAGAGAAATGCATGTCAA
AGTTCCAGGGATCCTATTCACCTCCAACAAGAATGTGTCTTTGTTGCGAT
TTGTGCTTTTTGAAATGTAGTTGTGGTGACTGCTTTAAGCCAAGATTGAA
AGCTCCCACAAAGGAATATTCATGCACACTTCGACCGGTCTCACAGGATG
AAAGAAGTCAAGTACGTGGTCTCTTAGAGGATTATTCtgaacaaaatttt
cagaagGTCAGGCAGGCAGTTAAACAGGTCTCTCTACCAATAATGTATTT
TGAATTCAGACATTTCCACATTAATCAAATAATGGAAAATATCAGAAAGA
TTTTTACAATCAAAGATGTTTATGGTAAAATTGAGATCTGGAGAAGATGT
CATGCTGTGgcaattttgaacatttttcaagAGGTTTTTGGGGACGTTGA
AATGGTGGATAATGAAGAAAGCAAGCAATCGCATGAAATTTCAGTGGAGG
TTGATCCCAACTGGTTTTCCATCATAAATGACACTAGTTTTCAAAACCAG
ATATCAGAATCCATGTTTTCTAAACTTACAGTGACCATGGAAGATGAATG
TCT

Coding sequence (CDS) from alignment at sc0000020:856863..859765+

>TCONS_00002469 ID=TCONS_00002469|Name=TCONS_00002469|organism=Clytia hemisphaerica|type=CDS|length=2241bp|location=Sequence derived from alignment at sc0000020:856863..859765+ (Clytia hemisphaerica)
ATGCTCAAGAGGTGCTTTCATTTTGGTCCATCCCTCACCATGGAAGGGTT
TATTCAAGAAAGTGGCAGAATCGGTCGCAATGGAAAACAGAGTACCAGTA
TTTTACTCTACAACAGCATTCTACAGGGTCACTGCTCTCTAGAAATGAAA
GATTTCATTGGTACTAAATCATGTCGAAGAGAGAAATGCATGTCAAAGTT
CCAGGGATCCTATTCACCTCCAACAAGAATGTGTCTTTGTTGCGATTTGT
GCTTTTTGAAATGTAGTTGTGGTGACTGCTTTAAGCCAAGATTGAAAGCT
CCCACAAAGGAATATTCATGCACACTTCGACCGGTCTCACAGGATGAAAG
AAGTCAAGTACGTGGTCTCTTAGAGGATTATTCtgaacaaaattttcaga
agGTCAGGCAGGCAGTTAAACAGGTCTCTCTACCAATAATGTATTTTGAA
TTCAGACATTTCCACATTAATCAAATAATGGAAAATATCAGAAAGATTTT
TACAATCAAAGATGTTTATGGTAAAATTGAGATCTGGAGAAGATGTCATG
CTGTGgcaattttgaacatttttcaagAGGTTTTTGGGGACGTTGAAATG
GTGGATAATGAAGAAAGCAAGCAATCGCATGAAATTTCAGTGGAGGTTGA
TCCCAACTGGTTTTCCATCATAAATGACACTAGTTTTCAAAACCAGATAT
CAGAATCCATGTTTTCTAAACTTACAGTGACCATGGAAGATGAATGTATG
CTCAAGAGGTGCTTTCATTTTGGTCCATCCCTCACCATGGAAGGGTTTAT
TCAAGAAAGTGGCAGAATCGGTCGCAATGGAAAACAGAGTACCAGTATTT
TACTCTACAACAGCATTCTACAGGGTCACTGCTCTCTAGAAATGAAAGAT
TTCATTGGTACTAAATCATGTCGAAGAGAGAAATGCATGTCAAAGTTCCA
GGGATCCTATTCACCTCCAACAAGAATGTGTCTTTGTTGCGATTTGTGCT
TTTTGAAATGTAGTTGTGGTGACTGCTTTAAGCCAAGATTGAAAGCTCCC
ACAAAGGAATATTCATGCACACTTCGACCGGTCTCACAGGATGAAAGAAG
TCAAGTACGTGGTCTCTTAGAGGATTATTCtgaacaaaattttcagaagG
TCAGGCAGGCAGTTAAACAGGTCTCTCTACCAATAATGTATTTTGAATTC
AGACATTTCCACATTAATCAAATAATGGAAAATATCAGAAAGATTTTTAC
AATCAAAGATGTTTATGGTAAAATTGAGATCTGGAGAAGATGTCATGCTG
TGgcaattttgaacatttttcaagAGGTTTTTGGGGACGTTGAAATGGTG
GATAATGAAGAAAGCAAGCAATCGCATGAAATTTCAGTGGAGGTTGATCC
CAACTGGTTTTCCATCATAAATGACACTAGTTTTCAAAACCAGATATCAG
AATCCATGTTTTCTAAACTTACAGTGACCATGGAAGATGAATGTATGCTC
AAGAGGTGCTTTCATTTTGGTCCATCCCTCACCATGGAAGGGTTTATTCA
AGAAAGTGGCAGAATCGGTCGCAATGGAAAACAGAGTACCAGTATTTTAC
TCTACAACAGCATTCTACAGGGTCACTGCTCTCTAGAAATGAAAGATTTC
ATTGGTACTAAATCATGTCGAAGAGAGAAATGCATGTCAAAGTTCCAGGG
ATCCTATTCACCTCCAACAAGAATGTGTCTTTGTTGCGATTTGTGCTTTT
TGAAATGTAGTTGTGGTGACTGCTTTAAGCCAAGATTGAAAGCTCCCACA
AAGGAATATTCATGCACACTTCGACCGGTCTCACAGGATGAAAGAAGTCA
AGTACGTGGTCTCTTAGAGGATTATTCtgaacaaaattttcagaagGTCA
GGCAGGCAGTTAAACAGGTCTCTCTACCAATAATGTATTTTGAATTCAGA
CATTTCCACATTAATCAAATAATGGAAAATATCAGAAAGATTTTTACAAT
CAAAGATGTTTATGGTAAAATTGAGATCTGGAGAAGATGTCATGCTGTGg
caattttgaacatttttcaagAGGTTTTTGGGGACGTTGAAATGGTGGAT
AATGAAGAAAGCAAGCAATCGCATGAAATTTCAGTGGAGGTTGATCCCAA
CTGGTTTTCCATCATAAATGACACTAGTTTTCAAAACCAGATATCAGAAT
CCATGTTTTCTAAACTTACAGTGACCATGGAAGATGAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001321XLOC_001321Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002469-proteinTCONS_00002469-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002469-exon-sc0000020-1491911889:856863..856912TCONS_00002469-exon-sc0000020-1491911889:856863..856912Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1510915933:856863..856912TCONS_00002469-exon-sc0000020-1510915933:856863..856912Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1575043694:856863..856912TCONS_00002469-exon-sc0000020-1575043694:856863..856912Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1491911889:857483..858404TCONS_00002469-exon-sc0000020-1491911889:857483..858404Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1510915933:857483..858404TCONS_00002469-exon-sc0000020-1510915933:857483..858404Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1575043694:857483..858404TCONS_00002469-exon-sc0000020-1575043694:857483..858404Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1491911889:858699..858814TCONS_00002469-exon-sc0000020-1491911889:858699..858814Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1510915933:858699..858814TCONS_00002469-exon-sc0000020-1510915933:858699..858814Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1575043694:858699..858814TCONS_00002469-exon-sc0000020-1575043694:858699..858814Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1491911889:859144..859765TCONS_00002469-exon-sc0000020-1491911889:859144..859765Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1510915933:859144..859765TCONS_00002469-exon-sc0000020-1510915933:859144..859765Clytia hemisphaericaexon
TCONS_00002469-exon-sc0000020-1575043694:859144..859765TCONS_00002469-exon-sc0000020-1575043694:859144..859765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:856863..859765 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.259997	0.184391	0.107048	0.0785472	0.159373	0.201502	0.0911637	0.284488	0.179259	0.271384	0.143679	0.283347	0.361551	0.16325	0.590539	0.388885	0.283896	0.709274	0.427136	0.499552	0.617023	0.367843	0.379409	0.172469	0.152262	0.0905935	0.842653	0.380474	0.445981	0.294013
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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