TCONS_00002468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002468
Unique NameTCONS_00002468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002468 ID=TCONS_00002468|Name=TCONS_00002468|organism=Clytia hemisphaerica|type=transcript|length=262bp
tttgagagtatcttaagtaaaatttaatAATGTAACCCCATGACCAGATG
CCAGATTCGCTTtacgaaatcaaaacattgaaaaccAGTTTTCAATTTTG
TGGTTTCTTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCT
GCAGTCTAGTGTAAGAAAAATGGAAAGGAGAAACATAATTCAACCACAAA
ATCATGATGTGTCGTGATGCTGTATCATAACATAAACTGCACGAAACCAT
TTCTCGTCAAGT
Run BLAST on NCBI

transcript from alignment at sc0000020:855525..856043+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002468 ID=TCONS_00002468|Name=TCONS_00002468|organism=Clytia hemisphaerica|type=transcript|length=519bp|location=Sequence derived from alignment at sc0000020:855525..856043+ (Clytia hemisphaerica)
tttgagagtatcttaagtaaaatttaatAATGTAACCCCATGACCAGATG
CCAGATTCGCTTtacgaaatcaaaacattgaaaaccAGTTTTCAATTTTG
TGGTTTCTTTGAGTGTTAAAGTTGGAGTGGTGGAAGTGATAAGCTGATCT
GCAGTCTAGTGTAAGAAAAATGGAAAGGAGAAACATAATTCAACCACAAA
ATCATGATGTGTAAGTATTACTTCACCCATTTATATCAACAAATGAGTCT
AGTTAGTGCTATTTCTATATATCCTAAACTAAGGGTCAATCAGACAACAC
tcatttaaggattttttttgtatctttttgtttctttaatttgCCTTTGC
GATTTGTCATGTCATTCACCCAGATCAGGGGTAtattttctacttttatt
tacttttttgtaaatgctgttcatttgttgtcaaaatgtttgactCTTTT
GTCTTTCTACACTACAGGTCGTGATGCTGTATCATAACATAAACTGCACG
AAACCATTTCTCGTCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001320XLOC_001320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002468-exon-sc0000020-1491911889:855525..855734TCONS_00002468-exon-sc0000020-1491911889:855525..855734Clytia hemisphaericaexon
TCONS_00002468-exon-sc0000020-1510915933:855525..855734TCONS_00002468-exon-sc0000020-1510915933:855525..855734Clytia hemisphaericaexon
TCONS_00002468-exon-sc0000020-1575043694:855525..855734TCONS_00002468-exon-sc0000020-1575043694:855525..855734Clytia hemisphaericaexon
TCONS_00002468-exon-sc0000020-1491911889:855992..856043TCONS_00002468-exon-sc0000020-1491911889:855992..856043Clytia hemisphaericaexon
TCONS_00002468-exon-sc0000020-1510915933:855992..856043TCONS_00002468-exon-sc0000020-1510915933:855992..856043Clytia hemisphaericaexon
TCONS_00002468-exon-sc0000020-1575043694:855992..856043TCONS_00002468-exon-sc0000020-1575043694:855992..856043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:855525..856043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636988	0	0	0	8.80147	5.48748	2.11482	4.3333	0.678767	2.54513	4.39953	2.10067	1.35988	4.47249	2.53192	0.767214	4.92464	4.97994	0	0	4.17727	2.36888	4.17946	1.99201	3.80897	6.08051	2.62031	0	2.19667	0.720329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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