TCONS_00002466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002466
Unique NameTCONS_00002466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002466 ID=TCONS_00002466|Name=TCONS_00002466|organism=Clytia hemisphaerica|type=transcript|length=2259bp
GAATTTTCACCTTGCTCAGTCACGTGTTCATATGGAACACGTGTTCGATT
ACGCACGTGTACTGAACCAGTTCCCGCCAATAATGGTGCTGATTGTACGG
GACCGAGAGTGGAAGATGAAGAATGCTATATGGGGCCTTGCAAAGTTTAC
ACCACGCCATTTCCAACCACCCGCCACCATACAGCAACGTCCTCAAGCTA
CTACTCAAACGCCTCTATTATACCCACATTACCGCCAGCAAGCAATACAC
AGAAAGTTATGGTCACGACACCTGCATATTATTCACCGACAAATTCAACA
CTATTAACTTCAATTTCATTCACAAATGCAACTAATTTCCAATCGACACC
TCAAAACATCACTAATACATCATCAATAGTTtcatcaaccaatcagaatc
cATCAAGTCCATCAGTAGCCAATCAGGGCTCATTATTGAATCAAGCAACG
TCCAATCAGAATCTGTCGCTACCGGCAACTGCATCTCACAACTCAAAACA
ACCAGTAGAATTTCCACCAGCTGATGACAATAAACCAACAACATCCTCGT
CAAAAACAGAAGCAAGACTGACCACCAGTAATAAAACTAGCACTGACTCT
TTAGCGTCTAACAACCAACCAACAATGAACAGTTTAGCAAATGTGACATC
AAACAAGTCCACACCAAGTGGTTTTGTAGATAGCAAGAATAATTTGTTAC
CAACACTGACTGTTGAAAAGGTTTTACACCCGTCATTAAGAGCAAACATG
ACGAACAATGATGCCAAGAAAGTTTCTGGAGCATCGACAAGATCTCCAAC
AGAGAGCAGTGAAGgaAGCTGCAGTGAGGCTTCGTTGCTTAAACTTCCGT
TAAACGACACTCAATTCACGGCGTCGTCCGTCTATTCTCACGACACGGAC
GACGATTATGTCAAAAGGGAATATGCACCGCCAAACGCCCGTCTTAATAA
TGAAATCAACGGAGGTGGTTGGTGTGCAGAGCATAAATACAGTACACAAG
ATGATAAAGATCAATTCATACAAATCGACCTCGGGAAACAGATGTCTGTG
GATGGTGTAGCAACCCAGGGTAGTCATTTATTAGAGAATTGGGTCAAAAA
ATATAATttgagATACAGCGATGATGGCAAGAGTTGGCAATACTACTCAA
AGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCAGCGAAGTGTG
ATTTCTCCACCAATCACAGGCCgttattttcaattaaatccAATCGAATG
GAACCAAGGTGTTGAACCTGATAAACATGATATATGTATGAGGATTGCAT
TATTCAAGTGTAAAGAAACCCCATCTTCAGAAGCTGCTACATCACCTACC
GTTAAACGGAGCTTTATACAACCACGACCACATCATCGTAGCATCAATAA
CAAGCGTGGTGTTGTCATACGAGAACAAGCATGGTGGACACACTACCCAG
AAGAAAAAGCTAAATTAACTTTATTGAACGTTAATAAAATTGTTGGTCCT
AGTGAAGCCAGGATTCGAAGACAGGATGAGGATGTCTTAACAGTTTTCCC
AGGACATAAGAAAGGAcataaaagaattttttcaaagattcgtAAAATTG
CACATAATATTATGAAAAAGATTAGAGCCAAAAGCAAGAAGCAAAGAATG
AAATAAGAGACTGGATCTTATTTGGTTTTGCTATACAAGAAGTATTCTTC
TACATTTCAATCTACAGTGTATTTTGTCAATGGTTGCGGATCACTGCCAT
AAGAAGAGTGCCTGGCATTTCTTCTAACAGATGCTGTTCTTTTATGAAAC
AATTATTTATTTGAGCTTCAAAAACATTTACAATGCTTTTACAATGTACA
TGATTTGAGTGTTATGGTCATTacaaaaagatatcaaacttCAAATTCGA
GAACGTTTCTTTTGAAACTTCGATTGATTCTGTTAGCAATTAAAGCCAAA
GTCCGCGTGCTATGACCTATTTTAATCATTTCGAAGAACTTCAACGTGAA
GATTTGATAATATTTGATCTGAATTTCACTTCCTTATACAAACATTTCAC
ATTCTCAGCTTGACAATCCATTCATTAAAGAAATCGGAATCGGCGGAGCT
CGTCTCTGGTgacaaaaaaactgaatttttaaGTGAATACCTACCCCTTG
ACCTATCCCTACTATATTTTTGCCATATATTTATGCCATATTTTTAAgct
tgatttttcttgattttttagcTTTATATAATTTAATTAGAAGAACTCAT
CAAAGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000020:812521..818600+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002466 ID=TCONS_00002466|Name=TCONS_00002466|organism=Clytia hemisphaerica|type=transcript|length=6080bp|location=Sequence derived from alignment at sc0000020:812521..818600+ (Clytia hemisphaerica)
GAATTTTCACCTTGCTCAGTCACGTGTTCATATGGAACACGTGTTCGATT ACGCACGTGTACTGAACCAGTTCCCGCCAATAATGGTGCTGATTGTACGG GACCGAGAGTGGAAGATGAAGAATGCTATATGGGGCCTTGCAAAGGTGAG GGATTCTAAATAAGCTTGAGTGTCTACCAATTTCATCATCTCGAAAATTC ATGATATCTTTCTCAATAACGTGTTTGATTCCGTTACCCAAAGGTCTTAT TTAGGCCTGGCAAACGACGAATTTCGCCGGTCCAAGGCACAAAAACATTA CAATTCACAGTTCGAAAAGTTTGGTTCgccgcctcaagtacatatttacg ATAATCAAAACACTGCGCTTGCTAAGAattcgttaatttttcattcgcca gcctaccaaaaacaaagcaaaacccctGGTACCTCAATCAATGGGTTCTT TAAAGTCTTCTTAGTTAAAATTTTAAGTAATTTCTTCAGGTCTTTTTTAT ACTGAGATTTCTTGACTCATATTTAACAATTTGGCTGTGCTTGTGTTTTT AAAAATCGGTCTTTATAGAgagcgaaaaagtgaaaaaatctaatttttat ttGTTGCTTTCATTGGTTTTTTATCGAATTCACGTGATAGATTTCTCTTT TGATCTAAATTTTAGTCGGACAATCTGCTCCTTCAATAGTTTACACCACG CCATTTCCAACCACCCGCCACCATACAGCAACGTCCTCAAGCTACTACTC AAACGCCTCTATTATACCCACATTACCGCCAGCAAGCAATACACAGAAAG TTATGGTCACGACACCTGCATATTATTCACCGACAAATTCAACACTATTA ACTTCAATTTCATTCACAAATGCAACTAATTTCCAATCGACACCTCAAAA CATCACTAATACATCATCAATAGTTtcatcaaccaatcagaatccATCAA GTCCATCAGTAGCCAATCAGGGCTCATTATTGAATCAAGCAACGTCCAAT CAGAATCTGTCGCTACCGGCAACTGCATCTCACAACTCAAAACAACCAGT AGAATTTCCACCAGCTGATGACAATAAACCAACAACATCCTCGTCAAAAA CAGAAGCAAGACTGACCACCAGTAATAAAACTAGCACTGACTCTTTAGGT AAGAATATGAAACAGACATTGATGCTTTTTGAGGAAACTATTATTTTCCA TTACAAGTAAAGCAAGCAAGTTTGCCACCGTAGTCGAAGGCAGCCTGAAG AGTTACTTTTCTCTGACTGTCTACCCGAAAGTACGGGAAGGCGGCAGCTC TTTTTCCAGAAATTCTCCACTTACTCTCATTCTTTTCTTTAGTTACTGAG TATTAAGCAGAAAGGCATCAAATACTAATACTTTTTTGTACTAAGTAcaa agtctttggtatgacccggtcGGAGATTGAACTAACTTGCGCACTGTAGC TAGAAACTCTACGGCCGCATACCCTCGTCTGTAAAAGACTTGCTACAATA TGTTTAATTTTCTAGCCAATAATATCCCTCTTTTATTTTAGAGCCACCTG ATAAAAATCAAGAATCTTTCCATTACTTCCCTCAACAATAGCCTTTTCAG CAGAAAAAAACTGATTGCAAATGTTCTACGGCTTTCGGCTCATTTCTTAA AGATAAAGATTTGTCTTAGACTCTAGCATAGTTTAGCCCTTTCAATGAGC GATATTTTGAGCTCTCCAGATAATCCGAAAAATTTAGCTTTCTCTTTAAG TGTTTGAGTTGCAGAAGAAAGGGGCCCTAGGGGTATCCAATTTAAAACAG TTATATGTTCAGTCTACAATATAGTAGagtcttcttaactcgaacatcta tgactcgaatatctccttaactgGAACAAGTTTTACAGTCCCTGccgtta acaatgccttataaacatCTCACTTCATAACTTGAAACTTACTTtgactc gaacaaatttgtgttctccGCGTAGGTTCGAGCAATGGAGACTCTACTTT AATGATCTTTTGAGTGCTCACCTCTATGTAGAGGGGACTGTTTCAAGCTT AATCAATCCtaaattcatatttttctcTACAACAGCGTCTAACAACCAAC CAACAATGAACAGTTTAGCAAATGTGACATCAAACAAGTCCACACCAAGT GGTTTTGTAGATAGCAAGAATAATTTGTTACCAACACTGACTGTTGAAAA GGTTTTACACCCGTCATTAAGAGCAAACATGACGAACAATGATGGTTAGT ATTTTATTGTTTCTCTCTCTaaaatcatggtcgtaatatttgagaaaaaa gggacattcccacaaaatcttatagccacaatcgatttggaagcgctctg gcttaggttggaagggttaGAGTATTAACTCTGAGTTTCAACATGAGACT TAATACTTACGacctaaaacttttttttaaattttgctgttgtcaaagtg caaaaaaagggacgacaaaattccaaaaaatatttttttgtataatgata cttttaatgatgtgcaactttagtccaaattttatggtaattttcatgtt tttgagacatgccataacttattTGAGTAGCTCTTAATGAACTAGATGCA GAAACATTGCTTTACTTTATAAAGGTAACCTCTACCAGACCCCTCTTTTT TGTAGACTgatcaaaaaaatattctccTGTCACATCTTTTCCTCGGTTTT TCTTAGCCAAGAAAGTTTCTGGAGCATCGACAAGATCTCCAACAGAGAGC AGTGAAGGTAAGATACattaattcaatttcatttcattgctAGGACTAAT TACTTGATAGTGCCTTAACATCAAACGAATCgaatttgttttatattttt aggaAGCTGCAGTGAGGCTTCGTTGCTTAAACTTCCGTTAAACGACACTC AATTCACGGCGTCGTCCGTCTATTCTCACGACACGGACGACGATTATGTC AAAAGGGAATATGCACCGCCAAACGCCCGTCTTAATAATGAAATCAACGG AGGTAAGACTTTTACTATTATTGTGTTTAAAACTCTAAAAGGGGTTAAAT TTGANTGGAGGTAAGACTTTTACTATTATTGTGTTTAAAACTCTAAAAGG GGTTAAATTTGAAATCCTTTAATGGGGGAAAGATGCAACATTTTCCCATC CAAAATGCGTGACCCGTGTGTGATTTTCACACAAACgtcggattgaaagt aaaacccaCCGCCAGATCTCGACAATATGCcactcgaaaaaaaaaagaaa atactatTATATTCAATCCGTCTTTGAAAAGGTGGCCgaaatcttaaggc ttcactttttcttgtatgagaaaggttgaagattcttcTCTTGCCCCCGC TGcaaaatttgaacatttttattcataaTTGGAGGTTTTCACTAAGTTAC CTAATAGTTAATGCTAGACAAATTTATACGGTGGTTCGATTCGAGTTCTT CTTTTCGAAGTGTTTCAAGTTTCTCGCGATAACTTTATTAAAAGATAATA ACAGTGCCTATTTCGATGACATTTCAGTCTGGTAAAAAAGTTTAGGTATA AGTCCTACTGAGGATTATTTTTTGACCGATCCAATGTTGGAAATAGAAAT ATATATAATCTACTCGAGCTTAACATGGGGATATTTGCTCTCCATCTTCG ATTCTTTGGATATTCATGTGATTGAGACATGCGTGATAAAATTCTTACAG TCCGTCTCCACAGCGTAGTTTCTGAGAAATCCAAGCTATTAATCACGGTT CAAATCAGCACAATGGCTGTTacaaaaattcttataaaaatcaattttcg tagGTGGTTGGTGTGCAGAGCATAAATACAGTACACAAGATGATAAAGAT CAATTCATACAAATCGACCTCGGGAAACAGATGTCTGTGGATGGTGTAGC AACCCAGGGTAGTCATTTATTAGAGAATTGGGTCAAAAAATATAATttga gATACAGCGATGATGGCAAGAGTTGGCAATACTACTCAAAGGTAAAGTTA CAATActtctttgtttatttacagtaatctgaaaaatttgcaaatagcCA ACTATTTTCTATTAATACCAGTAGGATACCGTCAGACCATCTTCGCatgt gacggttccgtttcgctccgaaacgaggTTAAGTCATTTTATTGGTAAAA TTCAAGTGTTACATCACTTCttaccaatagaatggcttcattccgtttcg gagcgaaacggaaccgtcacgtgcgaacatggccTCAGAgatgaaatttg ttttcaatttctgaGGATataagattttgttttttttgaatcGTAGCACG GACAATGTGACTTTTCCACCCATTGGTGACAAGCGTTCAGACATCGTAAT GAgcgaaaataattttagttttttctacttccggagaaattttggccctt ttcattcaaaaagtcaaGGGGCTGAAACACGGATTAACAATTAAAAGAGT AAGCTTAATGCAAATTAGCAATGTTATTAAttattgagaatttttttgtc gtttttattTAGAATCCACTCAATGGTAATAACGATCAAAACAGTATCCA GCGAAGTGTGATTTCTCCACCAATCACAGGCCgttattttcaattaaatc cAATCGAATGGAACCAAGGTGTTGAACCTGATAAACATGATATATGTATG AGGATTGCATTATTCAAGTGTAAAGGTACGGtttttctataaattttatT GAGGTTGAAGTTTCGTCATCCGAAATTCGGAACTTAGGAAAGGTTGAAGA ATCGCCTCTGGCTTTTGGCTTGAAGttcaatgcaatttttctaATTATTT GATTATGTCCTATATATAAGTCATCGGTGAATCAAGCCATCAAAGGTTTA GACAAAAAGCCAAACACATAAAACTATGGAACCTGTAAAGTGTGTGACAA ATTTAAACGTCTAAAAAAACTTAACATTTACCGAATAAAAGCTATGTATG ATTTTGCTTTGGAATTTATCCAGCTGCTAAATAAAAGGCTAGTTCATCAT CAACCGCCATCGACATGAATTGAATTCTTTGCAATCTTTTCGATCCCTAG AAACCCCATCTTCAGAAGCTGCTACATCACCTACCGTTAANGCCATAGAC ATGAATTGAATTCTTTGCAATCTTTTCGATCCCTAGAAACCCCATCTTCA GAAGCTGCTACATCACCTACCGTTAAACGGAGCTTTATACAACCACGACC ACATCATCGTAGCATCAATAACAAGCGTGGTGTTGTCATACGAGAACAAG CATGGTGGACACACTACCCAGAAGAAAAAGCTAAATTAACTTTATTGAAC GTTAATAAAATTGTTGGTCCTAGTGAAGCCAGGATTCGAAGACAGGATGA GGATGTCTTAACAGTTTTCCCAGGACATAAGAAAGGAcataaaagaattt tttcaaagattcgtAAAATTGCACATAATATTATGAAAAAGATTAGAGCC AAAAGCAAGAAGCAAAGAATGAAATAAGAGACTGGATCTTATTTGGTTTT GCTATACAAGAAGTATTCTTCTACATTTCAATCTACAGTGTATTTTGTCA ATGGTTGCGGATCACTGCCATAAGAAGAGTGCCTGGCATTTCTTCTAACA GATGCTGTTCTTTTATGAAACAATTATTTATTTGAGCTTCAAAAACATTT ACAATGCTTTTACAATGTACATGATTTGAGTGTTATGGTCATTacaaaaa gatatcaaacttCAAATTCGAGAACGTTTCTTTTGAAACTTCGATTGATT CTGTTAGCAATTAAAGCCAAAGTCCGCGTGCTATGACCTATTTTAATCAT TTCGAAGAACTTCAACGTGAAGATTTGATAATATTTGATCTGAATTTCAC TTCCTTATACAAACATTTCACATTCTCAGCTTGACAATCCATTCATTAAA GAAATCGGAATCGGCGGAGCTCGTCTCTGGTgacaaaaaaactgaatttt taaGTGAATACCTACCCCTTGACCTATCCCTACTATATTTTTGCCATATA TTTATGCCATATTTTTAAgcttgatttttcttgattttttagcTTTATAT AATTTAATTAGAAGAACTCATCAAAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001319XLOC_001319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002466-exon-sc0000020-1491911889:812521..812665TCONS_00002466-exon-sc0000020-1491911889:812521..812665Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:812521..812665TCONS_00002466-exon-sc0000020-1510915933:812521..812665Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:812521..812665TCONS_00002466-exon-sc0000020-1575043694:812521..812665Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:813210..813668TCONS_00002466-exon-sc0000020-1491911889:813210..813668Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:813210..813668TCONS_00002466-exon-sc0000020-1510915933:813210..813668Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:813210..813668TCONS_00002466-exon-sc0000020-1575043694:813210..813668Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:814606..814764TCONS_00002466-exon-sc0000020-1491911889:814606..814764Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:814606..814764TCONS_00002466-exon-sc0000020-1510915933:814606..814764Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:814606..814764TCONS_00002466-exon-sc0000020-1575043694:814606..814764Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:815227..815277TCONS_00002466-exon-sc0000020-1491911889:815227..815277Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:815227..815277TCONS_00002466-exon-sc0000020-1510915933:815227..815277Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:815227..815277TCONS_00002466-exon-sc0000020-1575043694:815227..815277Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:815373..815522TCONS_00002466-exon-sc0000020-1491911889:815373..815522Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:815373..815522TCONS_00002466-exon-sc0000020-1510915933:815373..815522Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:815373..815522TCONS_00002466-exon-sc0000020-1575043694:815373..815522Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:816324..816511TCONS_00002466-exon-sc0000020-1491911889:816324..816511Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:816324..816511TCONS_00002466-exon-sc0000020-1510915933:816324..816511Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:816324..816511TCONS_00002466-exon-sc0000020-1575043694:816324..816511Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:817033..817195TCONS_00002466-exon-sc0000020-1491911889:817033..817195Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:817033..817195TCONS_00002466-exon-sc0000020-1510915933:817033..817195Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:817033..817195TCONS_00002466-exon-sc0000020-1575043694:817033..817195Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1491911889:817657..818600TCONS_00002466-exon-sc0000020-1491911889:817657..818600Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1510915933:817657..818600TCONS_00002466-exon-sc0000020-1510915933:817657..818600Clytia hemisphaericaexon
TCONS_00002466-exon-sc0000020-1575043694:817657..818600TCONS_00002466-exon-sc0000020-1575043694:817657..818600Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:812521..818600 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0891817 0 0.0060022 0 0.128341 0 0 0 0 0 0 0.204271 0.0590151 0 0 0 8.87934e-10 0 0 0 0 2.3734e-07 0 0 0 0 0 0.0310308 0 0
Blast
BLAST of TCONS_00002466 vs. Swiss-Prot (Human)
Match: CNTP4 (Contactin-associated protein-like 4 OS=Homo sapiens GN=CNTNAP4 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.219e-17
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  922 YAPPNARLNNEINGGGW--CAEHKYSTQDDKDQFIQIDLGKQMSVDGVATQGSHLLENWVKKYNLRYSDDGKSWQYYSKN----PLNGNNDQNSIQRSVISPPITGRYFQLNPIEWNQGVEPDKHDICMRIALFKC 1311
            + P  ARLN     GGW     +KY       Q++QIDLG++M V  VATQG +   NWV  Y L +SD G +W+ Y +       +GN + +S+    + P I  R+ +  P+EWN      K  I MRI +F C
Sbjct:   54 HGPGFARLNRRDGAGGWSPLVSNKY-------QWLQIDLGERMEVTAVATQGGYGSSNWVTSYLLMFSDSGWNWKQYRQEDSIWGFSGNANADSVVYYRLQPSIKARFLRFIPLEWN-----PKGRIGMRIEVFGC 177          
The following BLAST results are available for this feature:
BLAST of TCONS_00002466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTP41.219e-1736.76Contactin-associated protein-like 4 OS=Homo sapien... [more]
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