TCONS_00002442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002442
Unique NameTCONS_00002442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002442 ID=TCONS_00002442|Name=TCONS_00002442|organism=Clytia hemisphaerica|type=transcript|length=852bp
GAATGACCAATATACAGCGATAGGTCCCTTTTGAATTAAAGGATCCCAGG
ACTTAGGCCACTTTTGAATTAGGGTAGCAAAATGTATTCTTAAACTTTTT
CAATTGAAAagagtattttaatttttgtttttctgaaaTGGAGGTTTTTT
ACTCTTCTTCTTAGTTTATATTTCTCACCATTCACTTCTGTCAGCTTCTG
TTACTAAGTTACAAATTGTTGGTTATTTGTTGTCCATTTTTTTTCCTCAC
GGTTATTTACCTAGGTCTGGTTCAGTTTTTTTCCAgtctgaaaatgaaga
aagataCACCCAGAAGACAAACCAGAGCCTCTTCAAGGCTAAAAGAAAAA
CACGTAGAAACAATAGAAGaagaGAGCTTTGTAGAAGACCAACAAAACAC
AACTTTggtaaagaaatcaaaatcaaagaaagattCAGTCGAAGATTTCC
CAAAAGctATAGATAAAGTTGGAGGTACCCAACAAGAAGCACAAATAGAG
GCGTCACCTACGAAAAAGAGGAAGAccaaaaaagacaaagaaaaatcact
TGAGATAACAGAGATTGATGAAACACAAGAAGATGCAGctATAGATAAAG
TTGGAGGTACCCAACAAGAAGCACAAATAGAGGCGTCACCTACGAAAAAG
AGGAAGAccaaaaaagacaaagaaaaatcactTGAGATAACAGAGATTGA
TGAAACACAAGAAGATGCAGctATAGATAAAGTTGGAGGTACCCAACAAG
AAGCACAAATAGAGGCGTCACCTACGAAAAAGAGGAAGAccaaaaaagac
aaagaaaaatcactTGAGATAACAGAGATTGATGAAACACAAGAAGATGC
AG
Run BLAST on NCBI

transcript from alignment at sc0000020:481600..484951+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002442 ID=TCONS_00002442|Name=TCONS_00002442|organism=Clytia hemisphaerica|type=transcript|length=3352bp|location=Sequence derived from alignment at sc0000020:481600..484951+ (Clytia hemisphaerica)
GAATGACCAATATACAGCGATAGGTCCCTTTTGAATTAAAGGATCCCAGG
ACTTAGGCCACTTTTGAATTAGGGTAGCAAAATGTATTCTTAAACTTTTT
CAATTGAAAagagtattttaatttttgtttttctgaaaTGGAGGTTTTTT
ACTCTTCTTCTTAGTTTATATTTCTCACCATTCACTTCTGTCAGCTTCTG
TTACTAAGTTACAAATTGTTGGTTATTTGTTGTCCATTTTTTTTCCTCAC
GGTTATTTACCTAGGTCTGGTTCAGTTTTTTTCCAgtctgaaaatgaaga
aagataCACCCAGAAGACAAACCAGAGCCTCTTCAAGGCTAAAAGAAAAA
CACGTAGAAACAATAGAAGGTGAGCCATTGAAAtagatttctttgatttt
ttctccaaaacaCTATATATCTGAACTAATGTTACAAATGCTAATTGGCA
TACCTTATCCGGGAAAAATGTTAGGGaaagtgtcaaaatttttcatGGGT
GTCAGTATTTTACTTGTCTAAAAACCTGAGGTTCCAtcatttgaaaaagc
cttgcTCGGATTATTTATCACTGGTCCCTGGATCACTTTTACCTGATTTC
TTATTATTGTCAATTTCTGGTTTCTCTTgggtaaaaaaatcatttttgat
ccCTTGCATTAAtgcatttaaaaatgattttaaaatgatatttttttgtg
atactttttcttttttagaagaGAGCTTTGTAGAAGACCAACAAAACACA
ACTTTggtaaagaaatcaaaatcaaagaaagattCAGTCGAAGATTTCCC
AAAAGGTAATAAAATAATCGATTGGTTTCAAAACTCTTTTTATGGTTTTT
TAGAATTATTAAATCAGcaaaatcagtttttaactCTCACCAATATTTGA
GAGATATGACTTCATTTGGAGCTTTAAAAAAGAGTTTTTCAAAGTagctc
atttttttctttccataaATATGTTTGAatgtagcctggagatccatgct
atgattacTTCTTTTATATAAAGATGGAGAAATGAATTGCATGGTTTNAT
CCATGCTATGATTACTTCTTTTATATAAAGATGGAGAAATGAATTGCATG
GTTTGGGCTATGAGTTTGAATTTTCCAGCTCCAAAAGGACCAGTTGAAAA
CACAGCTAATCAAATCTTGTTACTATTTACTATTCTTTTAAGTTGCttta
attttagtaagtgaggaaaGCGCTAAATTCCAAGATTTCTTAGATTCGTC
CTCACAGCCTGAACCCATCATGTATACATAAATACAGGACAGGTCTCCTG
TGTCTAGTTTGAATAATACTTCTAAATAAAACAGCACTGAATGTTCTATG
TCAAAATTAACTTGCTTACATTTTCTGACCGTTCAGATGAAAttctgtag
aaaaaaaactttcattttagTTAATAGAATGAAAGAGAAATCCTTTGATT
TCACTATGTGAATCAACACTTGTACTCATTTTTAATCATTCAGCCAATGT
GTTATCTGAATTGTTTtcgtagaaaaaatctttatctcGTCAGATCTCGT
TGTGTatcaaaattaccaaaataaattgaaaaatatcttatcGTAGCCCA
TTATTGCTCTGTGTACTGTATGATTAAATGAAatatatgatctcttttaa
gctATAGATAAAGTTGGAGGTACCCAACAAGAAGCACAAATAGAGGCGTC
ACCTACGAAAAAGAGGAAGAccaaaaaagacaaagaaaaatcactTGAGA
TAACAGAGATTGATGAAACACAAGAAGATGCAGGTAATTTTGATTATTGT
TCTTCATCAGATCTATTGTCTCTTTTTTATTATGCCCCTTTAAAGTGTGA
AAAGACTGGGTTAGTTTACAATGCAGGATTGAAATCAAATGTTTGAAGTT
GTTGCATTTATTTTCGCATTAAAACATAATTTTGACATGGTTCCTTgcca
ataaaaatttgaatgaaagaaAAATCCATTGATTTCACTATGTGAATCAA
CACTTCCACTAATTTTTAATCAATCAGCCAATGTGTTATCTGaattgttt
tcttaaaaaaatctttatctcGTTGTGTATTATAATGaccaaaataaatt
gaaaaatatcttatcGTAGCCCATTATTGCTCTGTGTATCGTAAGATTAA
ATGAAatatatgatctcttttaagctATAGATAAAGTTGGAGGTACCCAA
CAAGAAGCACAAATAGAGGCGTCACCTACGAAAAAGAGGAAGAccaaaaa
agacaaagaaaaatcactTGAGATAACAGAGATTGATGAAACACAAGAAG
ATGCAGGTAATTTTGATTATTGTTCTTCATCAGATCTATTGTCTCTTTTT
TATTATGCCCCTTTAAAGTGTGAAAAGACTGGGTTAGTTTACAATGCAGG
ATTGAAATCAAATGTTTGAAGTTGTTGCATTTATTTTCGCATTAAAACAT
AATTTTGACATGGTTCCTTgccaataaaaatttgaatgaaagaaAAATCC
ATTGATTTCACTATGTGAATCAACACTTCCACTAATTTTTAATCAATCAG
CCAATGTGTTATCTGaattgttttcttaaaaaaatctttatctcGTTGTG
TATTATAATGaccaaaataaattgaaaaatatcttatcGTAGCCCATTAT
TGCTCTGTGTATCGTAAGATTAAATGAAatatatgatctcttttaagctA
TAGATAAAGTTGGAGGTACCCAACAAGAAGCACAAATAGAGGCGTCACCT
ACGAAAAAGAGGAAGAccaaaaaagacaaagaaaaatcactTGAGATAAC
AGAGATTGATGAAACACAAGAAGATGCAGGTAATTTTGATTATTGTTCTT
CATCAGATCTATTGTCTCTTTTTTATTATGCCCCTTTAAAGTGTGAAAAG
ACTGGGTTAGTTTACAATGCAGGATTGAAATCAAATGTTTGAAGTTGTTG
CATTTATTTTCGCATTAAAACATAATTTTGACATGGTTCCTTgccaataa
aaatttgaatgaaagaaAAATCCATTGATTTCACTATGTGAATCAACACT
TCCACTAATTTTTAATCAATCAGCCAATGTGTTATCTGaattgttttctt
aaaaaaatctttatctcGTTGTGTATTATAATGaccaaaataaattgaaa
aatatcttatcGTAGCCCATTATTGCTCTGTGTATCGTAAGATTAAATGA
AatatatgatctcttttaagctATAGATAAAGTTGGAGGTACCCAACAAG
AAGCACAAATAGAGGCGTCACCTACGAAAAAGAGGAAGAccaaaaaagac
aaagaaaaatcactTGAGATAACAGAGATTGATGAAACACAAGAAGATGC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001309XLOC_001309Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002442-exon-sc0000020-1491911889:481600..481968TCONS_00002442-exon-sc0000020-1491911889:481600..481968Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1510915933:481600..481968TCONS_00002442-exon-sc0000020-1510915933:481600..481968Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1575043694:481600..481968TCONS_00002442-exon-sc0000020-1575043694:481600..481968Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1491911889:482318..482404TCONS_00002442-exon-sc0000020-1491911889:482318..482404Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1510915933:482318..482404TCONS_00002442-exon-sc0000020-1510915933:482318..482404Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1575043694:482318..482404TCONS_00002442-exon-sc0000020-1575043694:482318..482404Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1491911889:483774..483905TCONS_00002442-exon-sc0000020-1491911889:483774..483905Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1510915933:483774..483905TCONS_00002442-exon-sc0000020-1510915933:483774..483905Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1575043694:483774..483905TCONS_00002442-exon-sc0000020-1575043694:483774..483905Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1491911889:484297..484428TCONS_00002442-exon-sc0000020-1491911889:484297..484428Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1510915933:484297..484428TCONS_00002442-exon-sc0000020-1510915933:484297..484428Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1575043694:484297..484428TCONS_00002442-exon-sc0000020-1575043694:484297..484428Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1491911889:484820..484951TCONS_00002442-exon-sc0000020-1491911889:484820..484951Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1510915933:484820..484951TCONS_00002442-exon-sc0000020-1510915933:484820..484951Clytia hemisphaericaexon
TCONS_00002442-exon-sc0000020-1575043694:484820..484951TCONS_00002442-exon-sc0000020-1575043694:484820..484951Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:481600..484951 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.61522	2.5008	0	3.07668	1.53804	2.12218	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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