TCONS_00002427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002427
Unique NameTCONS_00002427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1201

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002427 ID=TCONS_00002427|Name=TCONS_00002427|organism=Clytia hemisphaerica|type=transcript|length=1201bp
TGGGTGATCAAAAGCTATTAATGAAATGTGCGTGGAATGGAACGACTGCG
TCGACGACTAGTCAATGCTTTTACTTAAAAGGATtcgagaaagaaagaaa
tttgtaAGAGTGTAAAAGTAAGCATGTAAAAAGGCTTGACTCTACAAGCC
AAATTTAAGTGTTCACTAGTTTCCTTCAAATTTTACAGAACTAGTTTTCC
TGGTTTACACCCACTTTTTGTCGAAATTTCCTTCCTTCGTTTTCGAGAAT
TTAAAGTAATAATTGCATTTCgcggtagacacccaaaaacgcgaaaatta
gttccgtgAAAATTTAGCTCCCTTAACAATTGACGAAGGACTGTCAAGAT
CCATCTCGACATTTTCTTTAGAATGTGACAGTCAACATTTCAAGCCAACA
CAAGGAAATGAAAAATGCACACAATGTGGCTTGAACTCACGTTCTAGTAC
TAATCGAGCTACATGTAATTGTCTGCATAAATACAAACGAGAAGTTAGTG
AAGCCAACAATCCTTTAGCTGTCTGTTACAAAATCCCAGATATTTCCTCA
GCTATTGTCTTTCTAAACATAACCAGTAGCTCAGTAGAAATCACTTGGTC
ACACCTATCACaagtcaacaaaacaaatatttaCATTGTCGATTGCAATG
ATTGTCCCTCTGGTGTTTTACCTAAAAGCACCACCAACAAATTTATTACC
ATCAATGGTCTTGGTTCGTTTGCTGATTATGAAATTAGTGTGACTTTCTC
GAGTGAAGTTTCAAGGATGATcggtgaaaatcaaacttcgGAATTTCAAT
CGTTCCAGACATTGCCTGGAGTTCCCGGTAAAGTTCGAAATTTAATGCAA
AAGAGCTTAGACAATGGTAAAGTTGAATTGAGTTGGGATCCACCTTTTGC
AAAAGGAAACAATATCATCACCTACTTATTGACATATGGAGGATCCACAA
AGAAAACAACACTTACAACGCACATACTTGATCCTGATGTTGAAGAACAA
ACATTTTCAGTAGaaATTGCAGCACAAGTATCAGTGGGTGGACAACTTTT
GACTGGTGAATCAAgcacttttaaagaaaaaattcacgTCAAAGGAGGAG
CTGCTTTAGATATGGCAATTGGTGTTGGTGTTGGCGTTGTTTTATTGGTT
ATCATTATTGGTATCGTTGCGTTTTACATTTATCGCAAGAAAAATCTTAA
A
Run BLAST on NCBI

transcript from alignment at sc0000020:231945..233601+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002427 ID=TCONS_00002427|Name=TCONS_00002427|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at sc0000020:231945..233601+ (Clytia hemisphaerica)
TGGGTGATCAAAAGCTATTAATGAAATGTGCGTGGAATGGAACGACTGCG TCGACGACTAGTCAATGCTTTTACTTAAAAGGATtcgagaaagaaagaaa tttgtaAGAGTGTAAAAGTAAGCATGTAAAAAGGCTTGACTCTACAAGCC AAATTTAAGTGTTCACTAGTTTCCTTCAAATTTTACAGAACTAGTTTTCC TGGTTTACACCCACTTTTTGTCGAAATTTCCTTCCTTCGTTTTCGAGAAT TTAAAGTAATAATTGCATTTCgcggtagacacccaaaaacgcgaaaatta gttccgtgAAAATTTAGCTCCCTTAACAATTGACGAAGGACTGTCAAGAT CCATCTCGACATTTTCTTTAGAATGTGACAGTCAACATTTCAAGCCAACA CAAGGAAATGAAAAATGCACACAATGTGGCTTGAACTCACGTTCTAGTAC TAATCGAGCTACATGTAATTGTCTGCATAAATACAAACGAGAAGTTAGTG AAGCCAACAATCCTTTAGCTGTCTGTTACAGTAAGTTTACGTCAATCTTT ATCGTGCAAGACCTCCTAAaaccatttttagaaaattcacATGATCATTC ATAATAAATCAATTTTACCTTTCTCTAGAAATCCCAGATATTTCCTCAGC TATTGTCTTTCTAAACATAACCAGTAGCTCAGTAGAAATCACTTGGTCAC ACCTATCACaagtcaacaaaacaaatatttaCATTGTCGATTGCAATGAT TGTCCCTCTGGTGTTTTACCTAAAAGCACCACCAACAAATTTATTACCAT CAATGGTCTTGGTTCGTTTGCTGATTATGAAATTAGTGTGACTTTCTCGA GTGAAGTTTCAAGGATGATcggtgaaaatcaaacttcgGAATTTCAATCG TTCCAGACATTGCCTGGAGGTAAGAAACATTCacaatcaaaagaattttc ctAGGAAATGTTCAAAACCTTTTTAGGGATATTGTTTTAACACtataaaa tgaatttaaaatcagaaaagacaTATAGTACTAAAATTCGCCAAGATAAT TCTTTTTTCTATCCTACAGTTCCCGGTAAAGTTCGAAATTTAATGCAAAA GAGCTTAGACAATGGTAAAGTTGAATTGAGTTGGGATCCACCTTTTGCAA AAGGAAACAATATCATCACCTACTTATTGACATATGGAGGATCCACAAAG AAAACAACACTTACAACGCACATACTTGATCCTGATGTTGAAGAACAAAC ATTTTCAGTAGaagtaaaatgaaaaataatttatgacaATTAGGACTAAC TTGTAGATTCACAATAATGTTGCAGCACTTCTAGTCCTGTATTTAATGGA AATTTGAAGGCACTAGAGGTTTTTCGCTCTTTTATTCAGTTTCTAGCGTT TAGGCCTATTTAGAACGGAGCTCACGGTTagttttttcgactttttttca aattttattccttttttataGATTGCAGCACAAGTATCAGTGGGTGGACA ACTTTTGACTGGTGAATCAAgcacttttaaagaaaaaattcacgTCAAAG GAGGAGCTGCTTTAGATATGGCAATTGGTGTTGGTGTTGGCGTTGTTTTA TTGGTTATCATTATTGGTATCGTTGCGTTTTACATTTATCGCAAGAAAAA TCTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001305XLOC_001305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002427-exon-sc0000020-1491911889:231945..232474TCONS_00002427-exon-sc0000020-1491911889:231945..232474Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1510915933:231945..232474TCONS_00002427-exon-sc0000020-1510915933:231945..232474Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1575043694:231945..232474TCONS_00002427-exon-sc0000020-1575043694:231945..232474Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1491911889:232573..232863TCONS_00002427-exon-sc0000020-1491911889:232573..232863Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1510915933:232573..232863TCONS_00002427-exon-sc0000020-1510915933:232573..232863Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1575043694:232573..232863TCONS_00002427-exon-sc0000020-1575043694:232573..232863Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1491911889:233014..233207TCONS_00002427-exon-sc0000020-1491911889:233014..233207Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1510915933:233014..233207TCONS_00002427-exon-sc0000020-1510915933:233014..233207Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1575043694:233014..233207TCONS_00002427-exon-sc0000020-1575043694:233014..233207Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1491911889:233416..233601TCONS_00002427-exon-sc0000020-1491911889:233416..233601Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1510915933:233416..233601TCONS_00002427-exon-sc0000020-1510915933:233416..233601Clytia hemisphaericaexon
TCONS_00002427-exon-sc0000020-1575043694:233416..233601TCONS_00002427-exon-sc0000020-1575043694:233416..233601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:231945..233601 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.796165 0.802008 0.708649 0.691616 11.4049 8.33283 4.0731 5.08575 2.8887 2.9221 1.42249 1.75946 2.35247 0.983579 1.59491 1.43754 1.72755 3.15555 1.55677 3.14762 3.19574 2.2404 2.02384 2.2448 4.13991 3.78572 3.77365 3.01327 2.24787 1.402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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