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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002427 ID=TCONS_00002427|Name=TCONS_00002427|organism=Clytia hemisphaerica|type=transcript|length=1201bp
TGGGTGATCAAAAGCTATTAATGAAATGTGCGTGGAATGGAACGACTGCG
TCGACGACTAGTCAATGCTTTTACTTAAAAGGATtcgagaaagaaagaaa
tttgtaAGAGTGTAAAAGTAAGCATGTAAAAAGGCTTGACTCTACAAGCC
AAATTTAAGTGTTCACTAGTTTCCTTCAAATTTTACAGAACTAGTTTTCC
TGGTTTACACCCACTTTTTGTCGAAATTTCCTTCCTTCGTTTTCGAGAAT
TTAAAGTAATAATTGCATTTCgcggtagacacccaaaaacgcgaaaatta
gttccgtgAAAATTTAGCTCCCTTAACAATTGACGAAGGACTGTCAAGAT
CCATCTCGACATTTTCTTTAGAATGTGACAGTCAACATTTCAAGCCAACA
CAAGGAAATGAAAAATGCACACAATGTGGCTTGAACTCACGTTCTAGTAC
TAATCGAGCTACATGTAATTGTCTGCATAAATACAAACGAGAAGTTAGTG
AAGCCAACAATCCTTTAGCTGTCTGTTACAAAATCCCAGATATTTCCTCA
GCTATTGTCTTTCTAAACATAACCAGTAGCTCAGTAGAAATCACTTGGTC
ACACCTATCACaagtcaacaaaacaaatatttaCATTGTCGATTGCAATG
ATTGTCCCTCTGGTGTTTTACCTAAAAGCACCACCAACAAATTTATTACC
ATCAATGGTCTTGGTTCGTTTGCTGATTATGAAATTAGTGTGACTTTCTC
GAGTGAAGTTTCAAGGATGATcggtgaaaatcaaacttcgGAATTTCAAT
CGTTCCAGACATTGCCTGGAGTTCCCGGTAAAGTTCGAAATTTAATGCAA
AAGAGCTTAGACAATGGTAAAGTTGAATTGAGTTGGGATCCACCTTTTGC
AAAAGGAAACAATATCATCACCTACTTATTGACATATGGAGGATCCACAA
AGAAAACAACACTTACAACGCACATACTTGATCCTGATGTTGAAGAACAA
ACATTTTCAGTAGaaATTGCAGCACAAGTATCAGTGGGTGGACAACTTTT
GACTGGTGAATCAAgcacttttaaagaaaaaattcacgTCAAAGGAGGAG
CTGCTTTAGATATGGCAATTGGTGTTGGTGTTGGCGTTGTTTTATTGGTT
ATCATTATTGGTATCGTTGCGTTTTACATTTATCGCAAGAAAAATCTTAA
A Run BLAST on NCBI transcript from alignment at sc0000020:231945..233601+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002427 ID=TCONS_00002427|Name=TCONS_00002427|organism=Clytia hemisphaerica|type=transcript|length=1657bp|location=Sequence derived from alignment at sc0000020:231945..233601+ (Clytia hemisphaerica)
TGGGTGATCAAAAGCTATTAATGAAATGTGCGTGGAATGGAACGACTGCG
TCGACGACTAGTCAATGCTTTTACTTAAAAGGATtcgagaaagaaagaaa
tttgtaAGAGTGTAAAAGTAAGCATGTAAAAAGGCTTGACTCTACAAGCC
AAATTTAAGTGTTCACTAGTTTCCTTCAAATTTTACAGAACTAGTTTTCC
TGGTTTACACCCACTTTTTGTCGAAATTTCCTTCCTTCGTTTTCGAGAAT
TTAAAGTAATAATTGCATTTCgcggtagacacccaaaaacgcgaaaatta
gttccgtgAAAATTTAGCTCCCTTAACAATTGACGAAGGACTGTCAAGAT
CCATCTCGACATTTTCTTTAGAATGTGACAGTCAACATTTCAAGCCAACA
CAAGGAAATGAAAAATGCACACAATGTGGCTTGAACTCACGTTCTAGTAC
TAATCGAGCTACATGTAATTGTCTGCATAAATACAAACGAGAAGTTAGTG
AAGCCAACAATCCTTTAGCTGTCTGTTACAGTAAGTTTACGTCAATCTTT
ATCGTGCAAGACCTCCTAAaaccatttttagaaaattcacATGATCATTC
ATAATAAATCAATTTTACCTTTCTCTAGAAATCCCAGATATTTCCTCAGC
TATTGTCTTTCTAAACATAACCAGTAGCTCAGTAGAAATCACTTGGTCAC
ACCTATCACaagtcaacaaaacaaatatttaCATTGTCGATTGCAATGAT
TGTCCCTCTGGTGTTTTACCTAAAAGCACCACCAACAAATTTATTACCAT
CAATGGTCTTGGTTCGTTTGCTGATTATGAAATTAGTGTGACTTTCTCGA
GTGAAGTTTCAAGGATGATcggtgaaaatcaaacttcgGAATTTCAATCG
TTCCAGACATTGCCTGGAGGTAAGAAACATTCacaatcaaaagaattttc
ctAGGAAATGTTCAAAACCTTTTTAGGGATATTGTTTTAACACtataaaa
tgaatttaaaatcagaaaagacaTATAGTACTAAAATTCGCCAAGATAAT
TCTTTTTTCTATCCTACAGTTCCCGGTAAAGTTCGAAATTTAATGCAAAA
GAGCTTAGACAATGGTAAAGTTGAATTGAGTTGGGATCCACCTTTTGCAA
AAGGAAACAATATCATCACCTACTTATTGACATATGGAGGATCCACAAAG
AAAACAACACTTACAACGCACATACTTGATCCTGATGTTGAAGAACAAAC
ATTTTCAGTAGaagtaaaatgaaaaataatttatgacaATTAGGACTAAC
TTGTAGATTCACAATAATGTTGCAGCACTTCTAGTCCTGTATTTAATGGA
AATTTGAAGGCACTAGAGGTTTTTCGCTCTTTTATTCAGTTTCTAGCGTT
TAGGCCTATTTAGAACGGAGCTCACGGTTagttttttcgactttttttca
aattttattccttttttataGATTGCAGCACAAGTATCAGTGGGTGGACA
ACTTTTGACTGGTGAATCAAgcacttttaaagaaaaaattcacgTCAAAG
GAGGAGCTGCTTTAGATATGGCAATTGGTGTTGGTGTTGGCGTTGTTTTA
TTGGTTATCATTATTGGTATCGTTGCGTTTTACATTTATCGCAAGAAAAA
TCTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002427-exon-sc0000020-1491911889:231945..232474 | TCONS_00002427-exon-sc0000020-1491911889:231945..232474 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1510915933:231945..232474 | TCONS_00002427-exon-sc0000020-1510915933:231945..232474 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1575043694:231945..232474 | TCONS_00002427-exon-sc0000020-1575043694:231945..232474 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1491911889:232573..232863 | TCONS_00002427-exon-sc0000020-1491911889:232573..232863 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1510915933:232573..232863 | TCONS_00002427-exon-sc0000020-1510915933:232573..232863 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1575043694:232573..232863 | TCONS_00002427-exon-sc0000020-1575043694:232573..232863 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1491911889:233014..233207 | TCONS_00002427-exon-sc0000020-1491911889:233014..233207 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1510915933:233014..233207 | TCONS_00002427-exon-sc0000020-1510915933:233014..233207 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1575043694:233014..233207 | TCONS_00002427-exon-sc0000020-1575043694:233014..233207 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1491911889:233416..233601 | TCONS_00002427-exon-sc0000020-1491911889:233416..233601 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1510915933:233416..233601 | TCONS_00002427-exon-sc0000020-1510915933:233416..233601 | Clytia hemisphaerica | exon |
| TCONS_00002427-exon-sc0000020-1575043694:233416..233601 | TCONS_00002427-exon-sc0000020-1575043694:233416..233601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:231945..233601 + |
Blast
The following BLAST results are available for this feature:
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