TCONS_00002423 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002423
Unique Name	TCONS_00002423
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1910

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000020:181978..187880+

transcript sequence

>TCONS_00002423 ID=TCONS_00002423|Name=TCONS_00002423|organism=Clytia hemisphaerica|type=transcript|length=1910bp
GCCGGGTgttgtggcgtgcatctgtaatccaGCTACTTGGAGGCTAAACT
CTCGAACGGCTTGAGTTCGAGACCACTTCCGTGCAGTTGTCTATGTCGAT
CAggcgtccacactaagctcagtgtcaacatggttatcatgcaGGAATGc
gagatacaccaggttcgataatgaagaacgtaccggcccagggcggaaac
gcagcaggcaaaagttctcgcagtgagcagtagtgggatagcgcttgtga
aTAGGTGGTGTACGGTAGCCCGCACAAGACAGTCGAACGAAGCTTTTTAT
TAATATCGTTTTCTTCATTCTTTTTCTTAGAGTTGGTTTGATTGAATGGG
TCGATAATACACAGCCTTATAAAACGCTCCTGATGGGTGCGATGACCGAT
AGAGAGCAGAAGGCTTACAACAGTTCAGATGGGCCGATGGTGAAGCATAG
AAAATTCACAGATGTGAAATATAAAACGTACAGTGAACTTACCAACAGAG
CAAGTCGTTCGGAAGTGATCAAAGTCATCTCCGATCTACAAAATATGGCT
AGCAATGACCTTCTCAGACGTGCTTTCAGTAGAATGGCATCTTCGAATGA
AGCTTATTTTGTGCTACGAAGTCGCTTTGTCCAATCACATTCCTACATGT
GTATCGCTCAATACATCTTGGGGATTGGGGATCGTCATTTAGACAACACT
TTGATTGACATGACAACTGGAGCTTGTGTGGGAATCGATTTTGGACACGC
ATTCGGATCGGCCACTCAGCTGTTGGGAGTTCCAGAGTTAGTTCCATTCC
GATTAACTCATCAAATGTTGACTTTCTTAAGTCCCATCAAAGACGCTTCG
CCTTATAAACAATACATGATGTCCGCCCTTCACGCCCTGCGGAAACAATC
CGCCCTCTTATTGAATACGATGGATGTTTTTATACAAGAGCCACTACTCG
ACTGGCAGaaatatgCTTTGAAGCTAGAAGCTAGAATGAAATCATCCAAT
GAAAAAGGTAAAACGAACGTTTGGGATCCGAGGTTCAAAGTCAATGTTTG
TAAAATGAAATTGTCTGGAATCAATCCTGCTTATATTatgagCCAAGATT
TGGAATATGGTGTGTTTCTGAATAATAAATCGTTGAATCGAAAAGTACAG
GCTGTAGCTGAAGGTGATCCTCATCAAAACTATCGCGCCGCCATGTTGAA
AGCAACGAAAGACCCTTCTACGCATGTTCTAAATGTCGAGGAGCAAGTAG
ATTGTTTGGTTGACTTGGCAACAGATAAGAACGTGATTGGTCGTATATTT
TCTGGATGGAGCCCTTGGATTTGATTGGTCCGTTTATTTAAGATGTCATC
TTCTGAACAATTTGTTATCCAAAGTCTAAACATACTAAACTTCAATAATC
GTCAAATCTGCATTTCGTTTGGCAATCTTTAACTACGTTGTTTTTCTCGA
ATCTAGCCGTTGTATCTTAAATGAAAATAGCAGGCGACTGCCTTTTCGAA
TGTAAGGCGGAAAAGACACTTATATTGGACAAGTGACATTTTGGAGAGCT
TCGATGCTAGGATGATTCTTTGGGGAAGAAACAGCCAACTTCAAGTTTTA
CGTAAGGCTGATTAAAGGTTCTACGCTTTTTTTAGGAAATCGCTTATTTT
GTTAacttaaaaagtgaaaagtttcTGTTAGTTTTTGTTTTCTCAAAATA
CCTGCATAACTTCGCAAATATttcaattgttgttttttttcaaatacagt
AACAATTTTATAATGCCACGAGGTTTAATTTTGATACAATCTAAAGCTAG
TAAGAAGGTACAACCAAGTTGCTAACGCTCAAGCCCTCAAATTAGCCTTT
TTTACACTATCTTTGAAGAAAATGCTTTTAGATGATCTAACCCTTGACCA
AATGAGCATA

Run BLAST on NCBI

transcript from alignment at sc0000020:181978..187880+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002423 ID=TCONS_00002423|Name=TCONS_00002423|organism=Clytia hemisphaerica|type=transcript|length=5903bp|location=Sequence derived from alignment at sc0000020:181978..187880+ (Clytia hemisphaerica)
GCCGGGTgttgtggcgtgcatctgtaatccaGCTACTTGGAGGCTAAACT
CTCGAACGGCTTGAGTTCGAGACCACTTCCGTGCAGTTGTCTATGTCGAT
CAggcgtccacactaagctcagtgtcaacatggttatcatgcaGGAATGc
gagatacaccaggttcgataatgaagaacgtaccggcccagggcggaaac
gcagcaggcaaaagttctcgcagtgagcagtagtgggatagcgcttgtga
aTAGGTGGTGTACGGTAGCCCGCACAAGACAGTCGAACGAAGCTTTTTAT
TAATATCGTTTTCTTCATTCTTTTTCTTAGAGTTGGTTTGATTGAATGGG
TCGATAATACACAGCCTTATAAAACGCTCCTGATGGGTGCGATGACCGAT
AGAGAGCAGAAGGCTTACAACAGTTCAGAGTAAGTGATACGAATTGTGAC
CATGGAATGCCCGAATGAGGGAAGGGCAACAAAATATGGTCAGGTGGATA
CAGGATTGGCCACACTATCGATCACGCTGGCTTTTTATTTCCAATATATA
GCCCTCCATTTGATattctgtacacagacccaatATCTAATTTCAGAATT
CATTGCCGAAACTATAAACGTGATACCTATCatatactcttgtctcccga
atagacggggggtggggtccgaataagcagggggtaggaaaatcttctaa
attctaataagcggtgGGTggaataaaaggggggggggGAATTTGAATAC
AGAATTCTTTTTAACTGATATCGATTTCAACAACAAAAAAGGAACTTTAG
CAAATGAACACGTAAAATAAGAACCAATACCAACAATAAGGAAAATTTTG
ACAAGTTTAAGGTCTATATACACTGTAATAGAATATTGAATTATTCGAAT
TTAATTAGCGGGGGGGGGTCTTATTAAGAGAGGatgggatggattttttt
ctcttaacaattagcggggggacgtctattcgggagacaagagtaatgcc
tatactactgtattacacgcataatataaacgactccagtctactaaGCA
CCTGGTTGTTGTAATGTTGGTTTTATCTTTGTTTCTTTCAGTGGGCCGAT
GGTGAAGCATAGAAAATTCACAGATGTGAAATATAAAACGTACAGTGAAC
TTACCAACAGAGCAAGTCGTTCGGAAGTGATCAAAGTCATCTCCGATCTA
CAAAATATGGCTAGCAATGACCTTCTCAGGTAAGAAACATTCAACGTCTT
TCGACAAGTGTGTAGCTAAGAAAAACGTCGCCTAGGAGAAATGTGGGTAA
AGTGTTCTGAAGAGTGAAGTAAGGGCAAATATACGCTATTTGTAGGAGTA
AAAGACGGGCTGTTGTGTTGTATGATTTATActacaaactttcattttca
tttgtcctcTGGAAACtatttcttgtaaaaaaaataatttaggtTGCTTA
GGTAACCTTTTAACAAGGGAACTGTGTCAATAAGCTAATCAGATTTCAAT
TTATAATAGGTATGTTACAATTTCCCTCTTTCTCAACCttcgatagctca
gttggtagagcggaggactgtagaggTATGAATGCTGACATCCTTAGGTC
GCTGGTTCAAATCCGGCTCGAAGGACtagttttttaacttttatataTAA
TTATATCATGGTAACTCCACGCGTAAAACGTAAAACACACCGTCTCTCCA
CTCATTTTTAATTTCCActttgataaatttgaaaaatacaagccTTTCAA
GTGTACTGACGCAAATTCGACTATTCACCTTACTGCATGAGCTTCGAAAG
TTtgaagtgacgtcaaaaaatcgaatgtgtGGAGCCTGGAAATTTGGGAT
AGACGTTACGGCGTAAAAAAAAGCCGTGGTGTCAAGTATAGACCCGGGGG
GTACTTATGCTAAttgagggtacggtatgtgcccccttaagggtaccttt
tttggattttcaaagaCCCGCCAagagtcggaaaaatcagaaaatccaat
ttcagtcccactaatggtcggaaaaataggaaaatttctattttctaccc
cctgaaagatcgaaatttgatcAGAATTGGTCAAATTTATCCCGCTAATG
GTCGTaatattcccaaaattttcctttgttttctcctttttagtcccggc
aagggtccaaagttcgaaattCGGGTGGCACCCTCCCCTTCGTCCCTCCC
CCGGGAATATAGACTACTGAAAGTGAAACAAGTATAATTACTATATAATC
GAAAGCCCTTCTTTTTAATTTGTGGGGAAGGAATTGGACACTTAATACCT
CCTTCCTCCTTCGTCCTTTACAGACATGACTGATTGTTTAGGAACCCGCA
GGTATTGTAATCACAAAGTTACAGATTCGAGCATAAACAAAGGCGAAATT
TTTATGTTGCCTTAATTAAATTTTGCCCCGGATTTCCAAACACTTGTACG
TTTTATAAAaagttcttcttctttcttcataCAGACGTGCTTTCAGTAGA
ATGGCATCTTCGAATGAAGCTTATTTTGTGCTACGAAGTCGCTTTGTCCA
ATCACATTCCTACATGTGTATCGCTCAATACATCTTGGGGATTGGGGATC
GTCATTTAGACAACACTTTGATTGACATGACAACTGGAGCTTGTGTGGGA
ATCGATTTTGGACACGCATTCGGATCGGCCACTCAGGTGTGTTTTTATCG
TTTTAATAGGCtctatgaaattttcaaaaccccAAACACTATCCAAATCA
ACTCTTAAGTCATGTCTAATGATGAAACACACCCATAAAGGCTCATAAGA
AATGTTGGAAAAAGGCCTCGTTAACATATTCGCTGCCAactacgagtata
ctcgtaGCAGAGGCGTCAAAATACTGGTAGTACTTCAAAGGGCGTAACTT
TTGGGAAACTTTTGATTGCATTTTTGGAATCCACATGCTTGTGGCGTACC
CGGTATTAAAAATACGTGTACGTAAAACTCCGCGTCGATTGGTATACAAT
TTGAaggtattttaagaaaaactagGACACAGGACCCTCTTAAAGTGAAA
CTTTCGATAAAATAATCCAGATAACGAAttttcgatttctgaaaaaGGCT
CGGCAGTGAACGTGTTATTCATTTCCactttattttatgttttatagcCT
CCAAAAGGGATGTTTTACTATGATCTTCTTGTATTTAAAGGATTAAATCC
TGGATTTTTTAAAAGTGTAGTATGGTTTGACCATATGTCAGGATTCTTTC
GTCCTATAACCGATTCGTGCTCTTCGTGTTTACGGAGATCTGCGATCAGA
CTAAGTGtctgaattagtaaaagtagtaTGCCTAGTATAGTAAAGTAAAA
GTAGTGACTTTATTTCTTGATTTATGAATTATATTTCAGCTGTTGGGAGT
TCCAGAGTTAGTTCCATTCCGATTAACTCATCAAATGTTGACTTTCTTAA
GTCCCATCAAAGACGCTTCGCCTTATAAACAATACATGATGTCCGCCCTT
CACGCCCTGCGGAAACAATCCGCCCTCTTATTGAATACGATGGATGTTTT
TATACAAGAGCCACTACTCGACTGGCAGGTATGTATGGGGTTTTCAATAT
GTTCCTTGCATCTATGCTATCTATTGCCCtttctcaaaaagttttcagat
tATAATTTTCATACATACCTAACTCACTTGCCAATACAATTTGACCATat
tctttttagaaatatgCTTTGAAGCTAGAAGCTAGAATGAAATCATCCAA
TGAAAAAGGTATGATTCCACTTATTCCTTCCCTATACAATCAAACTATAA
AAAATGGAAATATATCGTATATTATGTACAGGTTTTGTTTGTATTTGATC
TTTTCTTATTGACCTCCAAGCGCCCTTACCCCTTAACTGTGTGaaccttt
tgaatatttttgttcaaaaagtgcaaagctctgggactgaaagggcTAAC
AAATTGTTTGGTCTCTTGGCTAATTCATCTTACATTTCGGGACGTTATTG
TTGCTAGATGAGCTCTGGTTTAGACGGCCTTTTTTTACCCTGCCAGACAA
TTAGACAGAATTAGACAGAATATTgcgctgtctaaagtcaatgtatTGGT
CACTTTTGACATTAATGCAATgacttttttcaatctttttcaagcaaaga
tccGGAACTTCTGGAttggaaatgaagccacttatttcttATCCAGATTA
ACGTGACCCGTGtgttttttaacaaattttctaAATGCCGGGCAAACTTG
AGGCTTCAGTTTTTCTTGCTCgaaaaaggttgaagattcctctagCCCCT
TCGGAGCTTAAATTCCAATGGATTTTAGCTGCCAAATAGTCCGTCAACTT
TTAGGCTAAACAATAGTGTACTGCGCAAAGATAGTAATGACTTTGCACAA
ATCTATTCGTCTGTACGCCTTGCAATCCCCTCCTCCTTTGCGTTAATCGC
TATTGAACGTTAAGACTTACAATATCAAAAGAGAAGTAATAGCTTTCACG
GTCTTCCACAATCATTTTGAAATGAACTATgagattgaaaaaatttgagt
taaaataattatgacgtatgcgacGCGGAGCGCTATCAGAATAGTCAGAG
CAGAAAGTCTAAACTAGATATGTTAATACGCCCTGGTGAATACTGTAATG
GAAGCACTATcgctttttttttcttgaaagtcaATCGGTAACGTTTTTTT
CACAACACATCTTCTTATTTAATATTACTTGCTCCAAAACAGGTAAAACG
AACGTTTGGGATCCGAGGTTCAAAGTCAATGTTTGTAAAATGAAATTGTC
TGGAATCAATCCTGCTTATATTatgaggtaaaaaaacttttgaatagTCT
TGCATTTTTTAACAATCTGTTTTGAACTTTCTTGATTGCAGGATTGTGTC
GGTCGAACCAATTACCTTGGTCGAAATGGTCGAATCATCTTATGCCTTAT
CATAGACGAGCTTTGGTGCTTTTCAAAAGCCTCAAGCTCCTAAATACCTA
AAATTCCTTTTTGCTACTCTATCATTCTCAACTTCCACAATTCGACATGT
CACCCTACCTTAATGATTTCAACCTTACATTTCAGCCAAGATTTGGAATA
TGGTGTGTTTCTGAATAATAAATCGTTGAATCGAAAAGTACAGGCTGTAG
CTGAAGGTGATCCTCATCAAAACTATCGCGCCGCCATGTTGAAAGCAACG
AAAGACCCTTCTACGCATGTTCTAAATGTCGAGGAGCAAGTAGATTGTTT
GGTTGACTTGGCAACAGATAAGAACGTGATTGGTCGTATATTTTCTGGAT
GGAGCCCTTGGATTTGATTGGTCCGTTTATTTAAGATGTCATCTTCTGAA
CAATTTGTTATCCAAAGTCTAAACATACTAAACTTCAATAATCGTCAAAT
CTGCATTTCGTTTGGCAATCTTTAACTACGTTGTTTTTCTCGAATCTAGC
CGTTGTATCTTAAATGAAAATAGCAGGCGACTGCCTTTTCGAATGTAAGG
CGGAAAAGACACTTATATTGGACAAGTGACATTTTGGAGAGCTTCGATGC
TAGGATGATTCTTTGGGGAAGAAACAGCCAACTTCAAGTTTTACGTAAGG
CTGATTAAAGGTTCTACGCTTTTTTTAGGAAATCGCTTATTTTGTTAact
taaaaagtgaaaagtttcTGTTAGTTTTTGTTTTCTCAAAATACCTGCAT
AACTTCGCAAATATttcaattgttgttttttttcaaatacagtAACAATT
TTATAATGCCACGAGGTTTAATTTTGATACAATCTAAAGCTAGTAAGAAG
GTACAACCAAGTTGCTAACGCTCAAGCCCTCAAATTAGCCTTTTTTACAC
TATCTTTGAAGAAAATGCTTTTAGATGATCTAACCCTTGACCAAATGAGC
ATA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001303	XLOC_001303	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000020	supercontig	sc0000020:181978..187880 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.05585	5.84455	6.97117	7.40866	7.79464	17.8928	23.9539	9.21216	10.0773	19.0727	22.2045	13.0277	9.80164	18.8061	17.7377	9.25542	25.3762	13.0753	46.2625	6.37827	7.09176	8.29192	10.327	6.87239	5.53308	5.4492	25.3722	23.0244	12.5748	9.46436

Blast

[Close]

BLAST of TCONS_00002423 vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 7.348e-71
Identity = 142/341 (41.64%), Postives = 196/341 (57.48%), Query Frame = 2

Query:  329 RVGLIEWVDNTQPYKTLLMGAMTDREQKAYNSSD-GPMVKHRKF-TDVKYK----TYSELTNRASRSEVIKVISDLQNMASNDLLRRAFSRMASSNEAYFVLRSRFVQSHSYMCIAQYILGIGDRHLDNTLIDMTTGACVGIDFGHAFGSATQLLGVPELVPFRLTHQMLTFLSPIKDASPYKQYMMSALHALRKQSALLLNTMDVFIQEPLLDWQKYALKLEARMKSSNEKGKTNV----WDPRFKVNVCKMKLSGINPAYIMSQDLEYGVFLNNKSLNRKVQAVAEGDPHQNYRAAMLKATKDPSTHVLNVEEQVDCLVDLATDKNVIGRIFSGWSPWI 1321
            R+GLIEW++NT   K LL+  M+  E+ AY S    P  +++ + T +  K     Y  +   A+R+E +      ++    DLL+RAF RM++S EA+  LRS F  SH+ +CI+ +ILGIGDRHL+N ++ M TG  +GIDFGHAFGSATQ L VPEL+PFRLT Q +  + P+K+       M+ AL A R    LL NTMDVF++EP  DW+ +  K+    K  +   + NV    W PR K+   K KL+G NPA I   +L  G         R   AVA G    N RA      ++P +  L+ E QV CL+D ATD N++GR + GW PW+
Sbjct: 3799 RLGLIEWLENTVTLKDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKM--LKKGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLG--HEKAPAFRDYVAVARGSKDHNIRA------QEPESG-LSEETQVKCLMDQATDPNILGRTWEGWEPWM 4128

The following BLAST results are available for this feature:

BLAST of TCONS_00002423 vs. Swiss-Prot (Human)

BLAST of TCONS_00002423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRKDC	7.348e-71	41.64	DNA-dependent protein kinase catalytic subunit OS=...	[more]

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TCONS_00002423 (transcript) - C. hemisphaerica