TCONS_00002407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002407
Unique NameTCONS_00002407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002407 ID=TCONS_00002407|Name=TCONS_00002407|organism=Clytia hemisphaerica|type=transcript|length=774bp
AGATGAACGCGTATATGCATGTAAACAAACATGGCGGATGAGGTCATGGA
GGTTGTTAACTGGAAAGTTAATGAAAGGCTTGAAACAGATCTAAAGACTC
TGGTAAAGCAAAACCGCttcgtcgaaaaaaaaaccctAATTACCCATGGA
GTCTTTCTACCCTAGATCGATGAATGAGACACTTTAATCTGTGGTATTTA
GACAAAATGACACCAATCGAGGCTGTTAAAGTGTAAAGATGCTGTAGTAG
CCAAAGAACTTGAGGGACCTGGTAAACTCTTAGGCTACCGAGCCCTGAAC
AATAAATTGAGACAAACACCTTTAACCTTTCGTATGCAATTACTAAAATT
TGCTGAGGGAGGATTTCGTAATGCATTTAAAGCGTACACAACAGAGAATG
ATGCAACAAAAATGTGGGTCATTAAGAATTTCAAGGCAACAGCTTGGGAA
GTATGTGGGCCACGCTATGAAATGACCCTTGAGCAGCACACTCGAAAACA
AGAGCAGATGCTTACTGCAGCTAAAGCTATCACAGTGAAATGTGTTACAA
GGCCTGGTTTTCGTGAAAATTGATTCACATATCAGACTATTTTTTTTAGT
ATTCTTGATGGTGAGCCAGTTACAGTGGAGCCTTTTGNACTAAAGCTATT
ACAGTGAAATGTGTTACAAGGCCTGGTTTTCGTGAAAATTGATTCACATA
TCAGACTATTTTTTTAGTATTCTTGATGGTGAGCCAGTTACAGTGGAGCC
TTTTGTTGACGGAGCCTTCATCAA
Run BLAST on NCBI

transcript from alignment at sc0000019:977607..978380

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002407 ID=TCONS_00002407|Name=TCONS_00002407|organism=Clytia hemisphaerica|type=transcript|length=774bp|location=Sequence derived from alignment at sc0000019:977607..978380 (Clytia hemisphaerica)
TTGATGAAGGCTCCGTCAACAAAAGGCTCCACTGTAACTGGCTCACCATC
AAGAATACTAAAAAAATAGTCTGATATGTGAATCAATTTTCACGAAAACC
AGGCCTTGTAACACATTTCACTGTAATAGCTTTAGTNCAAAAGGCTCCAC
TGTAACTGGCTCACCATCAAGAATACTAAAAAAAATAGTCTGATATGTGA
ATCAATTTTCACGAAAACCAGGCCTTGTAACACATTTCACTGTGATAGCT
TTAGCTGCAGTAAGCATCTGCTCTTGTTTTCGAGTGTGCTGCTCAAGGGT
CATTTCATAGCGTGGCCCACATACTTCCCAAGCTGTTGCCTTGAAATTCT
TAATGACCCACATTTTTGTTGCATCATTCTCTGTTGTGTACGCTTTAAAT
GCATTACGAAATCCTCCCTCAGCAAATTTTAGTAATTGCATACGAAAGGT
TAAAGGTGTTTGTCTCAATTTATTGTTCAGGGCTCGGTAGCCTAAGAGTT
TACCAGGTCCCTCAAGTTCTTTGGCTACTACAGCATCTTTACACTTTAAC
AGCCTCGATTGGTGTCATTTTGTCTAAATACCACAGATTAAAGTGTCTCA
TTCATCGATCTAGGGTAGAAAGACTCCATGGGTAATTagggttttttttt
cgacgaaGCGGTTTTGCTTTACCAGAGTCTTTAGATCTGTTTCAAGCCTT
TCATTAACTTTCCAGTTAACAACCTCCATGACCTCATCCGCCATGTTTGT
TTACATGCATATACGCGTTCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001294XLOC_001294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002407-exon-sc0000019-1491911889:977607..978380TCONS_00002407-exon-sc0000019-1491911889:977607..978380Clytia hemisphaericaexon
TCONS_00002407-exon-sc0000019-1510915933:977607..978380TCONS_00002407-exon-sc0000019-1510915933:977607..978380Clytia hemisphaericaexon
TCONS_00002407-exon-sc0000019-1575043694:977607..978380TCONS_00002407-exon-sc0000019-1575043694:977607..978380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:977607..978380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.555757	0.426355	0.136595	0.165535	2.64847	1.56087	1.55692	2.15826	1.14485	2.10135	0.652816	1.28256	0.768159	0.286518	0.248068	0.0178171	0	0.555006	0.56476	0.345111	0	1.02934	0	0.892701	1.44849	1.04014	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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