TCONS_00002400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002400
Unique NameTCONS_00002400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002400 ID=TCONS_00002400|Name=TCONS_00002400|organism=Clytia hemisphaerica|type=transcript|length=743bp
NNCGGCATGTGTAATACAGAGGCCCCGTAAGTACAAAGGCTAACATAGGC
CCTAGGAAGAGAATCTAGGCGTCACAATCATGTGACCAACCGCCAAATAA
AGGAACGGCCAAAGAGCGACCCCAATGCCACACCTACAGGGAGGGAAGAA
CAGTACTAGACGAACTAGTGTGTGGGATGCCGAAAGAAAACAAACTAATT
AATAAGTTGAGTAAATACTAATATTACGGATGTATATAGAAAATACTTGA
GTATAAAGAGCGATTCTGATATGATAACTATAtgctaaaataagaacata
agtaTACCATTGAAATATactatatgaaaaaaaaacaaaaaaaaaacagg
ctaCCGCAGAATGTGAGTACCTAGATATAGTCGTATGCTAAATGATGCAC
GAGGAGTAGGCCCGAATGAAAAAGGACGTCGAGTAGTAAGTGACTAGTAA
GTGCTAGAAGTGCCGACGCAGTAGAGCACAGTAGAGATGTAAATAGGGCA
TAATTGTACGCTTGAATCCGACGAGGTAGATGCAAATAATATAATAAATA
CTAGAAAGGCTATTGTTGCTGAGGTGCATCTGGATTCCACAGTCCATGCC
CAAGGGTTTTAGTTCGACACAATAATTGTCCTGTTTGCCTGATGGTTTTA
TCTGGGATACGAATGTAAGTCTCAAAACAAGTGCTGTTCCATCTACCAAG
TTGCTTAATTAGCCAGCTTGGTAGTCCTGCTGCTGCTGCTGTT
Run BLAST on NCBI

transcript from alignment at sc0000019:804639..805381

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002400 ID=TCONS_00002400|Name=TCONS_00002400|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000019:804639..805381 (Clytia hemisphaerica)
AACAGCAGCAGCAGCAGGACTACCAAGCTGGCTAATTAAGCAACTTGGTA GATGGAACAGCACTTGTTTTGAGACTTACATTCGTATCCCAGATAAAACC ATCAGGCAAACAGGACAATTATTGTGTCGAACTAAAACCCTTGGGCATGG ACTGTGGAATCCAGATGCACCTCAGCAACAATAGCCTTTCTAGTATTTAT TATATTATTTGCATCTACCTCGTCGGATTCAAGCGTACAATTATGCCCTA TTTACATCTCTACTGTGCTCTACTGCGTCGGCACTTCTAGCACTTACTAG TCACTTACTACTCGACGTCCTTTTTCATTCGGGCCTACTCCTCGTGCATC ATTTAGCATACGACTATATCTAGGTACTCACATTCTGCGGtagcctgttt tttttttgtttttttttcatatagtATATTTCAATGGTAtacttatgttc ttattttagcaTATAGTTATCATATCAGAATCGCTCTTTATACTCAAGTA TTTTCTATATACATCCGTAATATTAGTATTTACTCAACTTATTAATTAGT TTGTTTTCTTTCGGCATCCCACACACTAGTTCGTCTAGTACTGTTCTTCC CTCCCTGTAGGTGTGGCATTGGGGTCGCTCTTTGGCCGTTCCTTTATTTG GCGGTTGGTCACATGATTGTGACGCCTAGATTCTCTTCCTAGGGCCTATG TTAGCCTTTGTACTTACGGGGCCTCTGTATTACACATGCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001287XLOC_001287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002400-exon-sc0000019-1491911889:804639..805381TCONS_00002400-exon-sc0000019-1491911889:804639..805381Clytia hemisphaericaexon
TCONS_00002400-exon-sc0000019-1510915933:804639..805381TCONS_00002400-exon-sc0000019-1510915933:804639..805381Clytia hemisphaericaexon
TCONS_00002400-exon-sc0000019-1575043694:804639..805381TCONS_00002400-exon-sc0000019-1575043694:804639..805381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:804639..805381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.25545 3.43372 1.80538 1.5455 25.4941 22.2481 22.9497 28.9187 16.2607 18.1134 19.9213 16.2808 21.7936 21.8509 12.3093 13.0895 20.054 19.5161 20.8133 26.3628 24.1647 27.0561 9.44153 13.5984 18.9741 21.7939 51.293 48.8549 16.1362 13.5007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top