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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002390 ID=TCONS_00002390|Name=TCONS_00002390|organism=Clytia hemisphaerica|type=transcript|length=877bp
GGAAGATTACTGCTGAACTACAACCATTGTGTTCATTGTTGGTTGAAGCT
TTTGCATCATACCACAATAATGACCCCACATTATCACCTTCACAAGCCTT
CGCTAAAAGGATGAAAGACACATTCAATGGTCAGAAAAAGAAACTATATT
CATTGACGACGAACAAGTTTTTTGACAATAACAATCCTAACAAAGATAAT
TTGAAAAAGGATATTGAATTTAatagtctggatatccaggtaTTGTTGAA
GCTATTgattgaaactgattttctttttgaaagaaacaAAGGGACATGTG
GTGTGCACCATACTGCTAAATGTTGTGACTCTTGTAAACATCAAGGGAAC
TACAGATGCTCATCGTGTAAATGCGACAAGGCAGACTGCGGTAAACTATG
CTGCAAATTATGTGGGAAATGCGTCAAATGCAGCCGtgataaatttgaaa
tattcaaaGACTTTTATTTGAGTGGCAAGAATTGTGATATTATTACAATG
GAAAATTCGAGTCTTTGTTATATGGCTAATCTAAAAGCAAGCCTTCAAAT
TATGTTGAAATggcgaaatttagtccacgtAACTACCAAAGAATGTGAAC
TCTTTGTTTGCAATCGCAGCAAATCTCTTGGTAATGATTTTAAAGACATC
AATGGTGGACAAGATGAGCTGTCTAAGATTATACATATGGCAATCAAAAC
AGTCATTAAACTTTTATCCGACCCAAATTATTTTGACGGGAAAGTTGACT
TTCGCAAAAAggtgaaagaaattgaaaacgaatttgatgaaatttttgat
agGTATTCGAAATTAATCCCTATCGAAGAATCAAAcagcaaaatgactca
aaaaCTTGCACAATTTATGGATTTCAT Run BLAST on NCBI protein sequence of TCONS_00002390-protein >TCONS_00002390-protein ID=TCONS_00002390-protein|Name=TCONS_00002390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
KITAELQPLCSLLVEAFASYHNNDPTLSPSQAFAKRMKDTFNGQKKKLYS
LTTNKFFDNNNPNKDNLKKDIEFNSLDIQVLLKLLIETDFLFERNKGTCG
VHHTAKCCDSCKHQGNYRCSSCKCDKADCGKLCCKLCGKCVKCSRDKFEI
FKDFYLSGKNCDIITMENSSLCYMANLKASLQIMLKWRNLVHVTTKECEL
FVCNRSKSLGNDFKDINGGQDELSKIIHMAIKTVIKLLSDPNYFDGKVDF
RKKVKEIENEFDEIFDRYSKLIPIEESNSKMTQKLAQFMDF Run BLAST on NCBI transcript from alignment at sc0000019:568657..569533 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002390 ID=TCONS_00002390|Name=TCONS_00002390|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at sc0000019:568657..569533 (Clytia hemisphaerica)
ATGAAATCCATAAATTGTGCAAGtttttgagtcattttgctgTTTGATTC
TTCGATAGGGATTAATTTCGAATACctatcaaaaatttcatcaaattcgt
tttcaatttctttcaccTTTTTGCGAAAGTCAACTTTCCCGTCAAAATAA
TTTGGGTCGGATAAAAGTTTAATGACTGTTTTGATTGCCATATGTATAAT
CTTAGACAGCTCATCTTGTCCACCATTGATGTCTTTAAAATCATTACCAA
GAGATTTGCTGCGATTGCAAACAAAGAGTTCACATTCTTTGGTAGTTacg
tggactaaatttcgccATTTCAACATAATTTGAAGGCTTGCTTTTAGATT
AGCCATATAACAAAGACTCGAATTTTCCATTGTAATAATATCACAATTCT
TGCCACTCAAATAAAAGTCtttgaatatttcaaatttatcaCGGCTGCAT
TTGACGCATTTCCCACATAATTTGCAGCATAGTTTACCGCAGTCTGCCTT
GTCGCATTTACACGATGAGCATCTGTAGTTCCCTTGATGTTTACAAGAGT
CACAACATTTAGCAGTATGGTGCACACCACATGTCCCTTtgtttctttca
aaaagaaaatcagtttcaatcAATAGCTTCAACAAtacctggatatccag
actatTAAATTCAATATCCTTTTTCAAATTATCTTTGTTAGGATTGTTAT
TGTCAAAAAACTTGTTCGTCGTCAATGAATATAGTTTCTTTTTCTGACCA
TTGAATGTGTCTTTCATCCTTTTAGCGAAGGCTTGTGAAGGTGATAATGT
GGGGTCATTATTGTGGTATGATGCAAAAGCTTCAACCAACAATGAACACA
ATGGTTGTAGTTCAGCAGTAATCTTCC Coding sequence (CDS) from alignment at sc0000019:568657..569533 >TCONS_00002390 ID=TCONS_00002390|Name=TCONS_00002390|organism=Clytia hemisphaerica|type=CDS|length=873bp|location=Sequence derived from alignment at sc0000019:568657..569533 (Clytia hemisphaerica)
GAAATCCATAAATTGTGCAAGtttttgagtcattttgctgTTTGATTCTT
CGATAGGGATTAATTTCGAATACctatcaaaaatttcatcaaattcgttt
tcaatttctttcaccTTTTTGCGAAAGTCAACTTTCCCGTCAAAATAATT
TGGGTCGGATAAAAGTTTAATGACTGTTTTGATTGCCATATGTATAATCT
TAGACAGCTCATCTTGTCCACCATTGATGTCTTTAAAATCATTACCAAGA
GATTTGCTGCGATTGCAAACAAAGAGTTCACATTCTTTGGTAGTTacgtg
gactaaatttcgccATTTCAACATAATTTGAAGGCTTGCTTTTAGATTAG
CCATATAACAAAGACTCGAATTTTCCATTGTAATAATATCACAATTCTTG
CCACTCAAATAAAAGTCtttgaatatttcaaatttatcaCGGCTGCATTT
GACGCATTTCCCACATAATTTGCAGCATAGTTTACCGCAGTCTGCCTTGT
CGCATTTACACGATGAGCATCTGTAGTTCCCTTGATGTTTACAAGAGTCA
CAACATTTAGCAGTATGGTGCACACCACATGTCCCTTtgtttctttcaaa
aagaaaatcagtttcaatcAATAGCTTCAACAAtacctggatatccagac
tatTAAATTCAATATCCTTTTTCAAATTATCTTTGTTAGGATTGTTATTG
TCAAAAAACTTGTTCGTCGTCAATGAATATAGTTTCTTTTTCTGACCATT
GAATGTGTCTTTCATCCTTTTAGCGAAGGCTTGTGAAGGTGATAATGTGG
GGTCATTATTGTGGTATGATGCAAAAGCTTCAACCAACAATGAACACAAT
GGTTGTAGTTCAGCAGTAATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002390-exon-sc0000019-1491911889:568657..569533 | TCONS_00002390-exon-sc0000019-1491911889:568657..569533 | Clytia hemisphaerica | exon |
| TCONS_00002390-exon-sc0000019-1510915933:568657..569533 | TCONS_00002390-exon-sc0000019-1510915933:568657..569533 | Clytia hemisphaerica | exon |
| TCONS_00002390-exon-sc0000019-1575043694:568657..569533 | TCONS_00002390-exon-sc0000019-1575043694:568657..569533 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:568657..569533 . |
Blast
The following BLAST results are available for this feature:
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