TCONS_00002380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002380
Unique NameTCONS_00002380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002380 ID=TCONS_00002380|Name=TCONS_00002380|organism=Clytia hemisphaerica|type=transcript|length=390bp
CATGTCTCAACGTGTCTCAACCGGGAACTGATTGATACACTTCCCTGCTC
TATCTAAACTAAACCTATCTATAAACTCTGGGAAACTGGCCTAGTTTGCA
AGATAAGGCTTCGTTGTTTTAATGCAAATATATCACTAGAACTAAGTTAG
AGTATGAGTTTAAAGTTTATTATAGCTACCTACCACCTGTTGTATGTTCA
AGCAGAATGTTCCATGTCAAATTTCTCCAGAGAGAATTTTTCACacgttt
tttcactttttattatcttttttttctatCATCTTCTTCTGCTCTACATA
CTCCAATTTGATCCAAGTGCAGCTGcttagtttttttaaagaagatcTTT
TCAAAGACGCGTTAATAAAAAcatctaaatattttatcaa
Run BLAST on NCBI

transcript from alignment at sc0000019:433533..433922

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002380 ID=TCONS_00002380|Name=TCONS_00002380|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000019:433533..433922 (Clytia hemisphaerica)
ttgataaaatatttagatgTTTTTATTAACGCGTCTTTGAAAAgatcttc
tttaaaaaaactaagCAGCTGCACTTGGATCAAATTGGAGTATGTAGAGC
AGAAGAAGATGatagaaaaaaaagataataaaaagtgaaaaaacgtGTGA
AAAATTCTCTCTGGAGAAATTTGACATGGAACATTCTGCTTGAACATACA
ACAGGTGGTAGGTAGCTATAATAAACTTTAAACTCATACTCTAACTTAGT
TCTAGTGATATATTTGCATTAAAACAACGAAGCCTTATCTTGCAAACTAG
GCCAGTTTCCCAGAGTTTATAGATAGGTTTAGTTTAGATAGAGCAGGGAA
GTGTATCAATCAGTTCCCGGTTGAGACACGTTGAGACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001267XLOC_001267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002380-exon-sc0000019-1491911889:433533..433922TCONS_00002380-exon-sc0000019-1491911889:433533..433922Clytia hemisphaericaexon
TCONS_00002380-exon-sc0000019-1510915933:433533..433922TCONS_00002380-exon-sc0000019-1510915933:433533..433922Clytia hemisphaericaexon
TCONS_00002380-exon-sc0000019-1575043694:433533..433922TCONS_00002380-exon-sc0000019-1575043694:433533..433922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:433533..433922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.392019	0.382281	0.443864	1.30276	2.90763	0.417754	1.00801	0.235921	0.495521	1.02297	0.99292	1.69704	0.651799	0.13538	0.333902	0.597214	1.61858	0.904905	0.416725	0.218036	0.379026	0.277314	0.449482	0	0	0.375638	0.537536	0.286837	0.217555	0.221655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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