TCONS_00002375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002375
Unique NameTCONS_00002375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002375 ID=TCONS_00002375|Name=TCONS_00002375|organism=Clytia hemisphaerica|type=transcript|length=1298bp
ATCGACGTATCATTGTAAACCTCCAAAGATTTCACCCTAatctaattttc
tcaaaaataacttGTATATATAATTAAACAGTCTATAAAATAAAGCTAAA
ATGACCAACATAAAAGGCGAAAATAAAATAGCTAATTCagtaaacaaaat
aattttaccGGTCAAATAATACTCTGCATTATTCACAAAGTTTACATTGA
TCGACCATGCCTTAAAATTATTCACGAACTTTGGTGATACGGACGTTGTG
CTAAAATTTAGTTGCATGAAATTAAGAATTTACCAGTCAATCGAAATTCT
GCATTTATCCAAAAAATCTACATCGATCGACCACGCCCAAGAAATATTCA
CGAACTGAAAAGTGCTTGATGCGGGCGTTGTGTTAAATTTAGCTGAATTC
AGTtaagaaagtttaaaaacaaatgGCTACATGGAATGTAAATAAGATCA
AGAAGAACCGGAAAAATCCAATTTAACAAAATACAAGTCCtccaaaagaa
aaatcaaccaaaaatgTTTAGTTTATCAACGTGTTATAAGAACCTACAAA
AAACCCCTAATCTAATTTTCGCAAAAATAACTTGTATATATAATTAAACA
GTCTATAAAATAAAGCTACAATAACGAAAATGATAGGTGAAAGTAAGATT
ACTAATtcaataaacaaaagaattttaccGGTCAAATAATACTCTGCATT
ATCTACAATGTCAATATTGATTGACCACGCCCAGAATGTGTTTACAAACG
CTAGAGTTATTAATAACGACATTGACATTAATTGTATGAAATTGAGCGAC
TTTTCGACAAAAGGTTTGACTGTGTAATCATGGATACTGAATATAATCAA
CAGAAATCCAGTTGGGTATAATTTCATGATCGGTGACCGGATGAACGTGG
TACTAATGATAAGGATCAATCGACGTGCGACAAACACCGGCTCCCATATG
ATTTTAACTGGCTTCCTTATTACTTGTTCAGACGTTTCATCTTTGTTTAT
ACTCACTCGAAAAGGTTGATTCATGAAGCTTACAATATTACTCTGTTCTA
TGGTCATTTTCTCTGACCATACATTCTGAGATTGACCAAGGTACCAGTTT
CTTGTTTTGTAAAACAGTACTACTGGTGGAAATGTAAGGGTCACCAACAA
TTCATTTGGTGTGATTGCTTTTGATCGAAGCCAACAACAACCAAAATATA
ATACAAAGGAAAAGGGAACAATCCAAAGACAAATCACCACAAAAACCATG
ATCTGCCATTGTTGGTAACACGCCACTTCAGCTTGATTAAAAATCCAA
Run BLAST on NCBI

transcript from alignment at sc0000019:364671..365968

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002375 ID=TCONS_00002375|Name=TCONS_00002375|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at sc0000019:364671..365968 (Clytia hemisphaerica)
TTGGATTTTTAATCAAGCTGAAGTGGCGTGTTACCAACAATGGCAGATCA TGGTTTTTGTGGTGATTTGTCTTTGGATTGTTCCCTTTTCCTTTGTATTA TATTTTGGTTGTTGTTGGCTTCGATCAAAAGCAATCACACCAAATGAATT GTTGGTGACCCTTACATTTCCACCAGTAGTACTGTTTTACAAAACAAGAA ACTGGTACCTTGGTCAATCTCAGAATGTATGGTCAGAGAAAATGACCATA GAACAGAGTAATATTGTAAGCTTCATGAATCAACCTTTTCGAGTGAGTAT AAACAAAGATGAAACGTCTGAACAAGTAATAAGGAAGCCAGTTAAAATCA TATGGGAGCCGGTGTTTGTCGCACGTCGATTGATCCTTATCATTAGTACC ACGTTCATCCGGTCACCGATCATGAAATTATACCCAACTGGATTTCTGTT GATTATATTCAGTATCCATGATTACACAGTCAAACCTTTTGTCGAAAAGT CGCTCAATTTCATACAATTAATGTCAATGTCGTTATTAATAACTCTAGCG TTTGTAAACACATTCTGGGCGTGGTCAATCAATATTGACATTGTAGATAA TGCAGAGTATTATTTGACCggtaaaattcttttgtttattgaATTAGTAA TCTTACTTTCACCTATCATTTTCGTTATTGTAGCTTTATTTTATAGACTG TTTAATTATATATACAAGTTATTTTTGCGAAAATTAGATTAGGGGTTTTT TGTAGGTTCTTATAACACGTTGATAAACTAAAcatttttggttgattttt cttttggaGGACTTGTATTTTGTTAAATTGGATTTTTCCGGTTCTTCTTG ATCTTATTTACATTCCATGTAGCcatttgtttttaaactttcttaACTGA ATTCAGCTAAATTTAACACAACGCCCGCATCAAGCACTTTTCAGTTCGTG AATATTTCTTGGGCGTGGTCGATCGATGTAGATTTTTTGGATAAATGCAG AATTTCGATTGACTGGTAAATTCTTAATTTCATGCAACTAAATTTTAGCA CAACGTCCGTATCACCAAAGTTCGTGAATAATTTTAAGGCATGGTCGATC AATGTAAACTTTGTGAATAATGCAGAGTATTATTTGACCggtaaaattat tttgtttactGAATTAGCTATTTTATTTTCGCCTTTTATGTTGGTCATTT TAGCTTTATTTTATAGACTGTTTAATTATATATACaagttatttttgaga aaattagatTAGGGTGAAATCTTTGGAGGTTTACAATGATACGTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001262XLOC_001262Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002375-exon-sc0000019-1491911889:364671..365968TCONS_00002375-exon-sc0000019-1491911889:364671..365968Clytia hemisphaericaexon
TCONS_00002375-exon-sc0000019-1510915933:364671..365968TCONS_00002375-exon-sc0000019-1510915933:364671..365968Clytia hemisphaericaexon
TCONS_00002375-exon-sc0000019-1575043694:364671..365968TCONS_00002375-exon-sc0000019-1575043694:364671..365968Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:364671..365968 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163421 0.174294 0.279189 0.0743921 0.163671 0.193497 0.142288 0.203853 0.0755412 0.183975 0.168363 0.0499127 0.206689 0.490196 0.234957 0.363659 0.181931 0.149974 0.29797 0.171654 0.669387 0.509444 0.580023 0.481689 0.349664 0.409081 1.57957 0.527333 0.64093 0.3596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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