TCONS_00002372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002372
Unique NameTCONS_00002372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002372 ID=TCONS_00002372|Name=TCONS_00002372|organism=Clytia hemisphaerica|type=transcript|length=258bp
NTtcaaaatgttatcaatctaTTTGTAATTTTCGTTTAAGGAATACCAAA
TTCATCAACTTGATAAAACACATCCACGATTCCATGTTTGATAAGTTGTC
GGTGTTGAATGTTGATAAGCGTCAATCTCCAATGACCGGCGTTTATTTTG
GTAATCGATCGTCTTTTAGTATATTCTATTGTATTCCTTGGTGGTTGATC
GTCTGAGCCATTGATTGATCATCTGTTTGAAGTTCAGGAAGAAGCGCTCG
TCCGATTG
Run BLAST on NCBI

transcript from alignment at sc0000019:317482..317739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002372 ID=TCONS_00002372|Name=TCONS_00002372|organism=Clytia hemisphaerica|type=transcript|length=258bp|location=Sequence derived from alignment at sc0000019:317482..317739 (Clytia hemisphaerica)
CAATCGGACGAGCGCTTCTTCCTGAACTTCAAACAGATGATCAATCAATG
GCTCAGACGATCAACCACCAAGGAATACAATAGAATATACTAAAAGACGA
TCGATTACCAAAATAAACGCCGGTCATTGGAGATTGACGCTTATCAACAT
TCAACACCGACAACTTATCAAACATGGAATCGTGGATGTGTTTTATCAAG
TTGATGAATTTGGTATTCCTTAAACGAAAATTACAAAtagattgataaca
ttttgaAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001259XLOC_001259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002372-exon-sc0000019-1491911889:317482..317739TCONS_00002372-exon-sc0000019-1491911889:317482..317739Clytia hemisphaericaexon
TCONS_00002372-exon-sc0000019-1510915933:317482..317739TCONS_00002372-exon-sc0000019-1510915933:317482..317739Clytia hemisphaericaexon
TCONS_00002372-exon-sc0000019-1575043694:317482..317739TCONS_00002372-exon-sc0000019-1575043694:317482..317739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:317482..317739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.29613	0	0	8.57319	0	0	0	0	6.65057	2.17516	5.21568	0.863089	17.4895	22.2874	12.0719	11.4809	4.51878	6.69797	7.09618	4.6326	0	0	2.50497	1.47039	0	1.211	25.4716	6.06475	0.00916217	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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