TCONS_00002361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002361
Unique NameTCONS_00002361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002361 ID=TCONS_00002361|Name=TCONS_00002361|organism=Clytia hemisphaerica|type=transcript|length=494bp
TGTTAAGACGTCTTAAAAATGGCTCATTGTCAACaaataagtttattttt
cttggcAATGATTTGTTTAAAGATGATAGTCCTGGTTGCAGAGACCAGCA
ACATCACAGCCTCTGAACCCACCAAGTTACCTACCAACAATGAAAGCCAC
AATGATTCAAACGAGACAGTAGAATATATAATGGATGCTATATTTTGGGA
GCAAAAACCTTTCCTTTTTTTCAACAAAGAAAAGGGAGAATTTGATGGAA
TTATACCCAATATGTTTTCTCAAGCAAATGAATTTTGTATTCCACCAGAG
AAGAACCGCAAAATAATCAATTATACAATGCGATTACCTAGTCGCAAAGC
TTTTTTCGATTTAGTTCACGCTGAAAATACAACTTATGGAGAGGGTCTAT
TAGCAGGTTTTAAATCTGAAAGAGCAATGTGGTTTCCAGTACTTGCCTAC
GCTGACCGTAATCAAGATAAACTACGAAAGAATCTAAAATTAAG
Run BLAST on NCBI

protein sequence of TCONS_00002361-protein

>TCONS_00002361-protein ID=TCONS_00002361-protein|Name=TCONS_00002361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MAHCQQISLFFLAMICLKMIVLVAETSNITASEPTKLPTNNESHNDSNET
VEYIMDAIFWEQKPFLFFNKEKGEFDGIIPNMFSQANEFCIPPEKNRKII
NYTMRLPSRKAFFDLVHAENTTYGEGLLAGFKSERAMWFPVLAYADRNQD
KLRKNLKL
Run BLAST on NCBI

transcript from alignment at sc0000019:60415..60908

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002361 ID=TCONS_00002361|Name=TCONS_00002361|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0000019:60415..60908 (Clytia hemisphaerica)
CTTAATTTTAGATTCTTTCGTAGTTTATCTTGATTACGGTCAGCGTAGGC
AAGTACTGGAAACCACATTGCTCTTTCAGATTTAAAACCTGCTAATAGAC
CCTCTCCATAAGTTGTATTTTCAGCGTGAACTAAATCGAAAAAAGCTTTG
CGACTAGGTAATCGCATTGTATAATTGATTATTTTGCGGTTCTTCTCTGG
TGGAATACAAAATTCATTTGCTTGAGAAAACATATTGGGTATAATTCCAT
CAAATTCTCCCTTTTCTTTGTTGAAAAAAAGGAAAGGTTTTTGCTCCCAA
AATATAGCATCCATTATATATTCTACTGTCTCGTTTGAATCATTGTGGCT
TTCATTGTTGGTAGGTAACTTGGTGGGTTCAGAGGCTGTGATGTTGCTGG
TCTCTGCAACCAGGACTATCATCTTTAAACAAATCATTgccaagaaaaat
aaacttatttGTTGACAATGAGCCATTTTTAAGACGTCTTAACA

Coding sequence (CDS) from alignment at sc0000019:60415..60908

>TCONS_00002361 ID=TCONS_00002361|Name=TCONS_00002361|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000019:60415..60908 (Clytia hemisphaerica)
TAATTTTAGATTCTTTCGTAGTTTATCTTGATTACGGTCAGCGTAGGCAA
GTACTGGAAACCACATTGCTCTTTCAGATTTAAAACCTGCTAATAGACCC
TCTCCATAAGTTGTATTTTCAGCGTGAACTAAATCGAAAAAAGCTTTGCG
ACTAGGTAATCGCATTGTATAATTGATTATTTTGCGGTTCTTCTCTGGTG
GAATACAAAATTCATTTGCTTGAGAAAACATATTGGGTATAATTCCATCA
AATTCTCCCTTTTCTTTGTTGAAAAAAAGGAAAGGTTTTTGCTCCCAAAA
TATAGCATCCATTATATATTCTACTGTCTCGTTTGAATCATTGTGGCTTT
CATTGTTGGTAGGTAACTTGGTGGGTTCAGAGGCTGTGATGTTGCTGGTC
TCTGCAACCAGGACTATCATCTTTAAACAAATCATTgccaagaaaaataa
acttatttGTTGACAATGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001248XLOC_001248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002361-proteinTCONS_00002361-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002361-exon-sc0000019-1491911889:60415..60908TCONS_00002361-exon-sc0000019-1491911889:60415..60908Clytia hemisphaericaexon
TCONS_00002361-exon-sc0000019-1510915933:60415..60908TCONS_00002361-exon-sc0000019-1510915933:60415..60908Clytia hemisphaericaexon
TCONS_00002361-exon-sc0000019-1575043694:60415..60908TCONS_00002361-exon-sc0000019-1575043694:60415..60908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:60415..60908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.14983	0	0	0	0	0	0	0	0	0.373797	0.383129	0	0	1.68501	1.23283	0.42819	0.259525	0	0.238563	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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