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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002348 ID=TCONS_00002348|Name=TCONS_00002348|organism=Clytia hemisphaerica|type=transcript|length=5076bpRun BLAST on NCBI transcript from alignment at sc0000019:992954..1027875- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002348 ID=TCONS_00002348|Name=TCONS_00002348|organism=Clytia hemisphaerica|type=transcript|length=34922bp|location=Sequence derived from alignment at sc0000019:992954..1027875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002348 vs. Swiss-Prot (Human)
Match: PK3CB (Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform OS=Homo sapiens GN=PIK3CB PE=1 SV=1) HSP 1 Score: 646.736 bits (1667), Expect = 0.000e+0 Identity = 416/1090 (38.17%), Postives = 602/1090 (55.23%), Query Frame = 1
Query: 106 NSTIDVICLLWNGMFIKLSNIRADLPLEKIKEDLWSQRGKHSK----EPKENYVFVVVSNNHGTEELVDEKLSLFDVKPVKPYLK-VTRKQGNEEXXXXXXXXXMLIG---HNISACNQEEVKEAQKNLSDMCNRISIERGKSSWYRRAIYTYPPDFEEDSKLPRFLEEKFPNKRIHISVSVLKNSSNVFDVEYS--IKPLELIEKALRKRAQTLRVDYKDD---PDQYMLKVLGSESYFLGNIVFENDQECYKEIPLIQYKYIREALYWDRRPSLIVMKREDMDICKLSSTNQDYPPAL----------LPKNRQSKRNKFI-NLWDLSPKTMFKVKIKSALDLNSGKLWE-KVQCGIFHGGDEVCETRSTSRIQGSSP-VWNEFLNFDLPVCDIPRMARLCFCIVG------------------YENKKKGQAV--PLAWVNMPLFNYKGFLHTGSFRIYCWQHSKKSNRTAANLTFNPLGTVMNS--NESGPCLAFELTEHDGKRPVVYPSEEDVYEKAANDITKGTQESDGENILLVKGGKQHKEQIEDIIKRDSLAPMFEQDKELLWRLRAECCLEYPESLPKLLQCVKWNNKEQVAQIHFLLQSWNCRTLEVEIALELLDYKFPDLKVRQRAVEVLNNISDNQLEMYLLHLVQALKYESYLDSPLARYLLKRALNNRRIGHYLFWHLKAEAGNPDYSLQFGLILEIYCRGAVDHIDILTRQNEAINKMKTVTEILK--SCNDPKDRKLRMMRECFQGPAYINAFKDITSPLDPXXXXXXXXIEKCKYMDSKKKPLWLVFENQDEEADDVLIIFKNGDDLRQDMLTLLSLRLMENVWKTSDLDYGVIPYRVLSTGPMLGLIQVVPNAETLGRIQHSKGGV-----FKEDGLFSWLKEYCDNNTRNPNIDTYINNFTKATIGYSVGMYVLGVGDRHNDNIMLKKDTGQFFHIDFGHFLGNVKKKWGYNREKAKFVLTNDIIYCINQLNQERGREG--EDFKQFKKDCIEAFACLRSRGNLFITVFAMLVSCGIPELDHPDDLEYLRQSLAMNKSEKDAVAHFKQVFDEAFKNRRQTSMNFWFHNFR 3204
+ +I V LL G++I+L R + + IK+ LW Q + ++Y+F V+ EEL DE L DV+P P LK VTR E K +LIG H + EV E ++ + + SW TYPP E + +P LE+K ++ ++V +N +VF + S + P+++ E A++KR L + K+D P Y+L+V G Y G + PLIQ++YIR + P I++ + CK+ + A+ LP K+ + I ++W+ F++ + LN+ + + V+ G+FHG + +C+T +S + G + +WNE L FD+ +CD+PRMARLCF + Y+ +K V P+AWVN +F++KG L TG ++ W S NP+GTV + E+ L + E + K+P YP + + EKAA SD N+ +GGK+ +++I+ RD L+ + E + +L+W LR +C +P+SLPKLL +KWN E VAQ+ LLQ W L ALELLD+ +PD VR+ AV L +SD +L YLL LVQ LKYE +LD L+R+LL+RAL NRRIG +LFWHL++E P S+QFG+ILE YCRG+V H+ +L++Q EA+NK+KT+ ++K + + + M C + AY A D+ SPL+P L L +EKCKYMDSK KPLWLV+ N+ D V +IFKNGDDLRQDMLTL LRLM+ +WK + LD ++PY L+TG GLI+VV +ET+ IQ + V F +D L +WLKEY + ++D I FT + GY V YVLG+GDRH+DNIM+KK TGQ FHIDFGH LGN K K+G RE+ F+LT D I+ I Q G+ G E F +F++ C +A+ LR GNLFIT+FA++++ G+PEL D++YL+ SLA+ KSE++A+ FKQ FDEA + T +N+ H R
Sbjct: 27 DGSIPVDFLLPTGIYIQLEVPR-EATISYIKQMLWKQVHNYPMFNLLMDIDSYMFACVNQTAVYEELEDETRRLCDVRPFLPVLKLVTRSCDPGEKLDSKIG--VLIGKGLHEFDSLKDPEVNEFRRKMRKFSEEKILSLVGLSWMDWLKQTYPP--EHEPSIPENLEDKLYGGKLIVAVH-FENCQDVFSFQVSPNMNPIKVNELAIQKR---LTIHGKEDEVSPYDYVLQVSGRVEYVFG------------DHPLIQFQYIRNCVMNRALPHFILV-----ECCKIKKMYEQEMIAIEAAINRNSSNLPLPLPPKKTRIISHVWE--NNNPFQIVLVKGNKLNTEETVKVHVRAGLFHGTELLCKTIVSSEVSGKNDHIWNEPLEFDINICDLPRMARLCFAVYAVLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFKGQLRTGDIILHSWS----SFPDELEEMLNPMGTVQTNPYTENATALHVKFPE-NKKQPYYYPPFDKIIEKAAE-----IASSDSANVS-SRGGKKFLPVLKEILDRDPLSQLCENEMDLIWTLRQDCREIFPQSLPKLLLSIKWNKLEDVAQLQALLQIWP--KLPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKYEPFLDCALSRFLLERALGNRRIGQFLFWHLRSEVHIPAVSVQFGVILEAYCRGSVGHMKVLSKQVEALNKLKTLNSLIKLNAVKLNRAKGKEAMHTCLKQSAYREALSDLQSPLNPCVILSELYVEKCKYMDSKMKPLWLVYNNKVFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEAGLDLRMLPYGCLATGDRSGLIEVVSTSETIADIQLNSSNVAAAAAFNKDALLNWLKEYNSGD----DLDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQ-----GKTGNTEKFGRFRQCCEDAYLILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKVNWMAHTVR 1065 The following BLAST results are available for this feature:
BLAST of TCONS_00002348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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