TCONS_00002338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002338
Unique NameTCONS_00002338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002338 ID=TCONS_00002338|Name=TCONS_00002338|organism=Clytia hemisphaerica|type=transcript|length=3546bp
GTCACAAGAAGAGAGATAGTCTGGAAGCGctaagcaatctgattggccgA
TGTTATTGTTTACGAACATACTAGTGCCCAGGGCATCGGACcttcaaaaa
TGAATTTTACATCTAACAAAATTTAGGCTCATGCCTGGAGAAAATTGTGC
CATCGTTGGTTGTGGGATCTGTCGGAATCAAAATAAGTATGGATTATTCA
AAATCCCACCACTTACAAAGCCTGAATGGCGTCAaaactttttggcttaa
attttGAAAGGCCGAATTGTCGATGAGAAATTCAGTAAGAAGATTGAATC
AAGCAAAGTTTGGGTTTGTGAGAAACACTACGAACCTGATGCTCTTTATC
ACTatgCAACACGAAAAGTACCAAAGGAGGATGCAATTCCAACATTGAAC
CTCCCTGGCATGTCAAACAAAACTTACGTTCCCCGCCCAATTAATTCCAT
TGTCAAAAGAGAACAAAACCACCAACCTGCAAATATCCCATCCACATCTA
TCAAAACTTTTTCCATTTACACATATCGTCAATTCTTGCAGAATGCATCA
ATGAGCATCAACAATAATTGGCAATATTCATTATTAGATCAGTTCTCAAC
TTTTCGTCTTTTTGATTCACGCTTTCAAGTTCCAAAATTTGATTTAGTCG
TTGACTGTCATTTAAAGGTAACATTAAGAGTTTTTGGATGGTTCAGCACC
TGCCCTTTTTCTATAATGTCTATGCCAATCAACACAATCTTAACAAAGCT
TGAAACCATGAATTTATGTGTGGGAATCAGTAATTTGGAATTGGTTAACA
ACGATGCAATCAGGCATCACACAATTTCAAAGCTACAAACAGTGAAACAA
TCAGACCTTCCTGatgcttttgaaaatcttgTTGAAAGACACTTTTACAG
AAGCCCATTTTGCTCATTATTAGTTGGACACCAACTTAAGATTTGTACGC
ATTGTACTTCTTTGGAGAAGAAGGAAATGAATGCCttgaaaatgaagcaa
aatatgcAAGCAAAACCCATTCCACTTAAAGCTCCTATAACCGCAACATC
AGTAGCTAGGTTGAAAGCGACAATCCTGGAACAAAGGGCCCTAAATAAAG
ATCTAACAAACCAGATCAGCTATTTACAAAATGAACTTGATCGAAAATCT
GTGATTGTTAACAAAGAATTACATCAAGATCTAAAATCTATATTCGATCA
AACTGACCAACGCAGGATTTCTccatttatgaaattgttttggGAAGAAC
AAATGAAGTATTTAAAGCAACACCCAACTCAAGTAAGTTATGTTATTTTT
GCAATAATTGCTATTATATTTCAGATAAAAGTATCCTTTTGGATTATTTA
TTATAGCTATATTCTATCTAGACCTGCATGTTCAAGTTTTTATCAAACAA
GATTAGAATTTTGTCATTTGCATTGCATACAtgaattttgcttaaaaatt
ttttttatgaaattaagCTCCAAAACATTTAACTTTTAAAGGTGAGGTAC
CATCCAATGATTATCAAATATTGTCTAACATTGTATGCCAAGTCACCTTC
AGCctacaaatattttcgttatgaTGAGAAAAATGGAACTGGGGCACTCA
TCCTTCCTTCAGAGAGGACATTGAGAGACTATCGCAATTACATCCGTCCG
AAGACCGGTTTTAATCAGCAAACTATCGAGAGATTGACTAAGTTAACAGA
AAAATTCAGTAATCAAGAGCGTTTTGTTGTTCTATCGTTTGACGAAATGA
AAATCCAGGAAGATTTGGTATGGAATAAGCATACTGGGGAACTTGTTGGT
TATGTTGACCTTGGTGATGAATCTCTCAATGAAGCTACTTTTAAAAACTG
TGATGATCTTGCCACACATGTTTTGGTTTTTCTTGTGAAAAGTGTGATCA
ACCCACTATCATTTTCTTTTGCAACATTTGCAACAAAAGGAGTAACTTCA
TTCCAAATCTTTCCTTTATTTTGGAAGGCTGTATGTTTGCTTGAGATGTC
CTGTAACTTACGTGTTGTTGCAGCAACTTCTGATGGGGCCTCACCAAACA
GAACCTTTTTCAAAATGCACAAAGGCTTTGTTTCTGGAGACATAGTGGTT
TATAGGACACCAAACATTTATGCTGAAGATGAGAAcacctttatttattt
tttctccgATATACCTCATCTTTTGAAAACTCTTAGGAATAATTTATTAC
ACTCAGGATCTGAAGGACACACTAGATTTATGTTTAAAGATGGTGGACAC
ATTTTATGGAAACACATAAAAGATTACTACATGGAGGATTCTTTATCTTG
CTACCGACACCTCAATAAAATCACTCCAGACCATATTTTTCTGACAAGCT
ATTCAAAAATGAATGTTAAATTGGCCGCACAATTGTTGAGTTCTAAGGTA
GCCACGACACTCAAAGAATATGGTGATGATGAAACCCAAGAAACAGCGGT
TTTTTGTGAGTTGGTTGACAAATGGTTTGATTGTGGTAATGTTAGACACC
CTGATGAACACAAAAGGAATATCAAACCTGATCAGAAGCCTTTTGAATCA
TTAACAGATGCACGTTTTGACTGgctggaaaataaatttttgaaatactt
tcaaGATTGGCTCAAGTGGATAAACACCGCACACCCGGNGAAACCTTTTG
AATCATTAACAGATGCACGTTTTGACTGgctggaaaataaatttttgaaa
tactttcaaGATTGGCTCAAGTGGATAAACACCGCACACCCGAGCATGAA
ACCTGAAATTAAGGGTAGAATGTTTATTAGCTGGCAAACTTACGAAGGAC
TTCAGATTTCCACCATGTCTCTTATCCATTGTACCAAGTATCTTTTGAAG
AATGGAATCAAATATGTTCTGACCAACAAATTCAATCAAGATGATTTGGA
AAATTACTTTGGTTGGCAACGATCGATTGGAAGAAGGAAAGACAATCCAA
GCCACCAACAAGTAAGAATCAATGACAACATTATAAAATCGTCACTACAT
GTTGCACCTAATGGAACAAATTGTGAGAACAGCACAACAACACGATGGTC
AATCAGCGATGAGCCTGTCCCCAAGAAACCCCGTACTTAGTTTAGAACGT
TTTTtacttttatattttgaatttttatattttgtcatacttttatattt
tttacatttttaattgttttacaCATTTTGGTTGCCGTTATTGTTAATAG
CACTGTCAATTAAAGGTTGATAATTTGTTATATTAAAATTTTATGAGAAT
ATTTATTATCCATCttttaaaatatactttttttgaAGCTAGTAAATTTG
TTGGTTTTGTTTGTGTAATATTCTTTTGgttagtttttgtttaaaatgca
tGTTTTTTAGTGCATGATGCATTACCACGCATGTTCAGTTAAGTCTTCAC
ATATATCAGAGATTTAGAGTTTTTGTTCGATTCGCATTACTTGCATTTTA
AATTATGGATCaattttgttattattataatattGAATGTATCACATTAG
AAACTGTTTTGAAGATTATGAATGCACTTGTAATTAtatgaattta
Run BLAST on NCBI

transcript from alignment at sc0000019:924410..928820-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002338 ID=TCONS_00002338|Name=TCONS_00002338|organism=Clytia hemisphaerica|type=transcript|length=4411bp|location=Sequence derived from alignment at sc0000019:924410..928820- (Clytia hemisphaerica)
GTCACAAGAAGAGAGATAGTCTGGAAGCGCTAAGCAATCTGATTGGCCGA
TGTTATTGTTTACGAACATACTAGTGCCCAGGGCATCGGACCTTCAAAAA
GTAAACAAATATGGCTGATTTTTTGCTTGGAGGAGGTTGTCTTTTGCAAA
ATAAATGTGTATTTTTGTTATTAGCTCACCTGTTTTGGAGTTATTAATAA
AAGTTATTGACTTGGGAGGGATCATATATATCCAGAAGAAACTTTTATGT
ATCTTCTTTTTTAGTTTTTTACTTTCCAGATCAAATTTTTAAAGTTGAAA
GGGAGGGTACTCAGCTGATGGTACGTAGGTTGGCATGTATAATTTTATAA
ACATGAAAAGTAAATACAAAATGAAGGAAGAAAACGTATATTTAGGTTGA
TAGTATCTATATGGTTTGTTATTTTCCCTTTCAGTGAATTTTACATCTAA
CAAAATTTAGGCTCATGCCTGGAGAAAATTGTGCCATCGTTGGTTGTGGG
ATCTGTCGGAATCAAAATAAGTATGGATTATTCAAAATCCCACCACTTAC
AAAGCCTGAATGGCGTCAAAACTTTTTGGCTTAAATTTTGAAAGGCCGAA
TTGTCGATGAGAAATTCAGTAAGAAGATTGAATCAAGCAAAGTTTGGGTT
TGTGAGAAACACTACGAACCTGATGCTCTTTATCACTGTAAGTATATAAA
GCATGATTTATTTTTTAATTTTTTGTTTAATTAGCTACTTTTGATGCATG
CTCACCTGAAGTCTTATTTTTGTAAAAGATGGAAATTAATTTTAAAGAAA
TTAGATTAGATTTTAAAATGCATGTTTTACTTCAGGTCTAATTTTTGTAA
GAGATAGAAATAAATTTTCAACATTATTAGGTTAGATATTATATCATAGT
GATTGAGGAGCTACTAATATAAGAGGGCATGTATTTTTTAATTTGAAAAT
TTTTTGATTTTAAATTTTAAGATGCAACACGAAAAGTACCAAAGGAGGAT
GCAATTCCAACATTGAACCTCCCTGGCATGTCAAACAAAACTTACGTTCC
CCGCCCAATTAATTCCATTGTCAAAAGAGAACAAAACCACCAACCTGCAA
ATATCCCATCCACATCTATCAAAACTTTTTCCATTTACACATATCGTCAA
TTCTTGCAGAATGCATCAATGAGCATCAACAATAATTGGCAATATTCATT
ATTAGATCAGTTCTCAACTTTTCGTCTTTTTGATTCACGCTTTCAAGTTC
CAAAATTTGATTTAGTCGTTGACTGTCATTTAAAGGTGAGTTTGTAGGTA
TTCAGTATTCAGTTAAAATGTACATTATATATAGAGGCTTTTTAGAGTAT
TGTACAACTATGAACTATATTGAAGATATATGAAGATATATTGCACGCTT
CTACAGTTAAATTCATGCATGCTCAAAATATATTTTTTTAAATTTTTCCT
ATTCATCAATCATATTATACGCTAACGTACATGATCAATCCATGCATGAC
CAATCATTCGTAAATTATATTTTTAACTTTAGGTAACATTAAGAGTTTTT
GGATGGTTCAGCACCTGCCCTTTTTCTATAATGTCTATGCCAATCAACAC
AATCTTAACAAAGCTTGAAACCATGAATTTATGTGTGGGAATCAGTAATT
TGGAATTGGTTAACAACGATGCAATCAGGCATCACACAATTTCAAAGCTA
CAAACAGTGAAACAATCAGACCTTCCTGATGCTTTTGAAAATCTTGTTGA
AAGACACTTTTACAGAAGCCCATTTTGCTCATTATTAGTTGGACACCAAC
TTAAGATTTGTACGCATTGTACTTCTTTGGAGAAGAAGGAAATGAATGCC
TTGAAAATGAAGCAAAATATGCAAGCAAAACCCATTCCACTTAAAGCTCC
TATAACCGCAACATCAGTAGCTAGGTTGAAAGCGACAATCCTGGAACAAA
GGGCCCTAAATAAAGATCTAACAAACCAGATCAGCTATTTACAAAATGAA
CTTGATCGAAAATCTGTGATTGTTAACAAAGAATTACATCAAGATCTAAA
ATCTATATTCGATCAAACTGACCAACGCAGGATTTCTCCATTTATGAAAT
TGTTTTGGGAAGAACAAATGAAGTATTTAAAGCAACACCCAACTCAAGTA
AGTTATGTTATTTTTGCAATAATTGCTATTATATTTCAGATAAAAGTATC
CTTTTGGATTATTTATTATAGCTATATTCTATCTAGACCTGCATGTTCAA
GTTTTTATCAAACAAGATTAGAATTTTGTCATTTGCATTGCATACATGAA
TTTTGCTTAAAAATTTTTTTTATGAAATTAAGCTCCAAAACATTTAACTT
TTAAAGGTGAGGTACCATCCAATGATTATCAAATATTGTCTAACATTGTA
TGCCAAGTCACCTTCAGCCTACAAATATTTTCGTTATGATGAGAAAAATG
GAACTGGGGCACTCATCCTTCCTTCAGAGAGGACATTGAGAGACTATCGC
AATTACATCCGTCCGAAGACCGGTTTTAATCAGCAAACTATCGAGAGATT
GACTAAGTTAACAGAAAAATTCAGTAATCAAGAGCGTTTTGTTGTTCTAT
CGTTTGACGAAATGAAAATCCAGGAAGATTTGGTATGGAATAAGCATACT
GGGGAACTTGTTGGTTATGTTGACCTTGGTGATGAATCTCTCAATGAAGC
TACTTTTAAAAACTGTGATGATCTTGCCACACATGTTTTGGTTTTTCTTG
TGAAAAGTGTGATCAACCCACTATCATTTTCTTTTGCAACATTTGCAACA
AAAGGAGTAACTTCATTCCAAATCTTTCCTTTATTTTGGAAGGCTGTATG
TTTGCTTGAGATGTCCTGTAACTTACGTGTTGTTGCAGCAACTTCTGATG
GGGCCTCACCAAACAGAACCTTTTTCAAAATGCACAAAGGCTTTGTTTCT
GGAGACATAGTGGTTTATAGGACACCAAACATTTATGCTGAAGATGAGAA
CACCTTTATTTATTTTTTCTCCGATATACCTCATCTTTTGAAAACTCTTA
GGAATAATTTATTACACTCAGGATCTGAAGGACACACTAGATTTATGTTT
AAAGATGGTGGACACATTTTATGGAAACACATAAAAGATTACTACATGGA
GGATTCTTTATCTTGCTACCGACACCTCAATAAAATCACTCCAGACCATA
TTTTTCTGACAAGCTATTCAAAAATGAATGTTAAATTGGCCGCACAATTG
TTGAGTTCTAAGGTAGCCACGACACTCAAAGAATATGGTGATGATGAAAC
CCAAGAAACAGCGGTTTTTTGTGAGTTGGTTGACAAATGGTTTGATTGTG
GTAATGTTAGACACCCTGATGAACACAAAAGGAATATCAAACCTGATCAG
AAGCCTTTTGAATCATTAACAGATGCACGTTTTGACTGGCTGGAAAATAA
ATTTTTGAAATACTTTCAAGATTGGCTCAAGTGGATAAACACCGCACACC
CGGNGAAACCTTTTGAATCATTAACAGATGCACGTTTTGACTGGCTGGAA
AATAAATTTTTGAAATACTTTCAAGATTGGCTCAAGTGGATAAACACCGC
ACACCCGAGCATGAAACCTGAAATTAAGGGTAGAATGTTTATTAGCTGGC
AAACTTACGAAGGACTTCAGATTTCCACCATGTCTCTTATCCATTGTACC
AAGTATCTTTTGAAGAATGGAATCAAATATGTTCTGACCAACAAATTCAA
TCAAGATGATTTGGAAAATTACTTTGGTTGGCAACGATCGATTGGAAGAA
GGAAAGACAATCCAAGCCACCAACAAGTAAGAATCAATGACAACATTATA
AAATCGTCACTACATGTTGCACCTAATGGAACAAATTGTGAGAACAGCAC
AACAACACGATGGTCAATCAGCGATGAGCCTGTCCCCAAGAAACCCCGTA
CTTAGTTTAGAACGTTTTTTACTTTTATATTTTGAATTTTTATATTTTGT
CATACTTTTATATTTTTTACATTTTTAATTGTTTTACACATTTTGGTTGC
CGTTATTGTTAATAGCACTGTCAATTAAAGGTTGATAATTTGTTATATTA
AAATTTTATGAGAATATTTATTATCCATCTTTTAAAATATACTTTTTTTG
AAGCTAGTAAATTTGTTGGTTTTGTTTGTGTAATATTCTTTTGGTTAGTT
TTTGTTTAAAATGCATGTTTTTTAGTGCATGATGCATTACCACGCATGTT
CAGTTAAGTCTTCACATATATCAGAGATTTAGAGTTTTTGTTCGATTCGC
ATTACTTGCATTTTAAATTATGGATCAATTTTGTTATTATTATAATATTG
AATGTATCACATTAGAAACTGTTTTGAAGATTATGAATGCACTTGTAATT
ATATGAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001234XLOC_001234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002338-exon-sc0000019-1575043694:928721..928820TCONS_00002338-exon-sc0000019-1575043694:928721..928820Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1575043694:928134..928386TCONS_00002338-exon-sc0000019-1575043694:928134..928386Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1575043694:927536..927849TCONS_00002338-exon-sc0000019-1575043694:927536..927849Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1575043694:924410..927288TCONS_00002338-exon-sc0000019-1575043694:924410..927288Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1510915933:928721..928820TCONS_00002338-exon-sc0000019-1510915933:928721..928820Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1510915933:928134..928386TCONS_00002338-exon-sc0000019-1510915933:928134..928386Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1510915933:927536..927849TCONS_00002338-exon-sc0000019-1510915933:927536..927849Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1510915933:924410..927288TCONS_00002338-exon-sc0000019-1510915933:924410..927288Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1491911889:928721..928820TCONS_00002338-exon-sc0000019-1491911889:928721..928820Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1491911889:928134..928386TCONS_00002338-exon-sc0000019-1491911889:928134..928386Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1491911889:927536..927849TCONS_00002338-exon-sc0000019-1491911889:927536..927849Clytia hemisphaericaexon
TCONS_00002338-exon-sc0000019-1491911889:924410..927288TCONS_00002338-exon-sc0000019-1491911889:924410..927288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:924410..928820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.124045	0.150997	0.854249	0.403325	0.861967	1.24064	0.365399	0	0.347844	0.967447	0.674661	0.11954	0.559115	0	0.97594	9.59275e-11	0.648546	0.453675	0.927613	0.432677	0	0.127529	0.779855	0.562263	0	0	0.174025	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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