TCONS_00002337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002337
Unique NameTCONS_00002337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002337 ID=TCONS_00002337|Name=TCONS_00002337|organism=Clytia hemisphaerica|type=transcript|length=3800bp
ttttttgcttggaGGAGGTTGTCTTTTGCAAAATAAATGTGTATTTTTGT
TATTAGCTCACCTGTTTTGGagttattaataaaagttaTTGACTTGGGAG
GGATCATATATATCCAGAAGAAACTTTTATGTATcttcttttttagtttt
ttactttccagatcaaatttttaaagttgAAAGGGAGGGTACTCAGCTGA
TGGTACGTAGGTTGGCATGTATAATTTTATAAACATGAAAAGTAAATACA
AAATGAAGGAAGAAAACGTATATTTAGGTTGATAGTATCTATATGGTTTG
TTATTTTCCCTTTCAGTGAATTTTACATCTAACAAAATTTAGGCTCATGC
CTGGAGAAAATTGTGCCATCGTTGGTTGTGGGATCTGTCGGAATCAAAAT
AAGTATGGATTATTCAAAATCCCACCACTTACAAAGCCTGAATGGCGTCA
aaactttttggcttaaattttGAAAGGCCGAATTGTCGATGAGAAATTCA
GTAAGAAGATTGAATCAAGCAAAGTTTGGGTTTGTGAGAAACACTACGAA
CCTGATGCTCTTTATCACTatgCAACACGAAAAGTACCAAAGGAGGATGC
AATTCCAACATTGAACCTCCCTGGCATGTCAAACAAAACTTACGTTCCCC
GCCCAATTAATTCCATTGTCAAAAGAGAACAAAACCACCAACCTGCAAAT
ATCCCATCCACATCTATCAAAACTTTTTCCATTTACACATATCGTCAATT
CTTGCAGAATGCATCAATGAGCATCAACAATAATTGGCAATATTCATTAT
TAGATCAGTTCTCAACTTTTCGTCTTTTTGATTCACGCTTTCAAGTTCCA
AAATTTGATTTAGTCGTTGACTGTCATTTAAAGGTGAGTTTGTAGGTATT
CAGTATTCAGTTAAAATGTACATTATATATAGAGGCTTTTTAGAGTATTG
TACAACTATGAACTATATTGAAGATATATGAAGATATATTGCACGCTTCT
ACAGTTAAATTCATGCAtgctcaaaatatatttttttaaatttttcctaT
TCATCAATCATATTATACGCTAACGTACATGATCAATCCATGCATGACCA
ATCATTcgtaaattatatttttaactttAGGTAACATTAAGAGTTTTTGG
ATGGTTCAGCACCTGCCCTTTTTCTATAATGTCTATGCCAATCAACACAA
TCTTAACAAAGCTTGAAACCATGAATTTATGTGTGGGAATCAGTAATTTG
GAATTGGTTAACAACGATGCAATCAGGCATCACACAATTTCAAAGCTACA
AACAGTGAAACAATCAGACCTTCCTGatgcttttgaaaatcttgTTGAAA
GACACTTTTACAGAAGCCCATTTTGCTCATTATTAGTTGGACACCAACTT
AAGATTTGTACGCATTGTACTTCTTTGGAGAAGAAGGAAATGAATGCCtt
gaaaatgaagcaaaatatgcAAGCAAAACCCATTCCACTTAAAGCTCCTA
TAACCGCAACATCAGTAGCTAGGTTGAAAGCGACAATCCTGGAACAAAGG
GCCCTAAATAAAGATCTAACAAACCAGATCAGCTATTTACAAAATGAACT
TGATCGAAAATCTGTGATTGTTAACAAAGAATTACATCAAGATCTAAAAT
CTATATTCGATCAAACTGACCAACGCAGGATTTCTccatttatgaaattg
ttttggGAAGAACAAATGAAGTATTTAAAGCAACACCCAACTCAAGTGAG
GTACCATCCAATGATTATCAAATATTGTCTAACATTGTATGCCAAGTCAC
CTTCAGCctacaaatattttcgttatgaTGAGAAAAATGGAACTGGGGCA
CTCATCCTTCCTTCAGAGAGGACATTGAGAGACTATCGCAATTACATCCG
TCCGAAGACCGGTTTTAATCAGCAAACTATCGAGAGATTGACTAAGTTAA
CAGAAAAATTCAGTAATCAAGAGCGTTTTGTTGTTCTATCGTTTGACGAA
ATGAAAATCCAGGAAGATTTGGTATGGAATAAGCATACTGGGGAACTTGT
TGGTTATGTTGACCTTGGTGATGAATCTCTCAATGAAGCTACTTTTAAAA
ACTGTGATGATCTTGCCACACATGTTTTGGTTTTTCTTGTGAAAAGTGTG
ATCAACCCACTATCATTTTCTTTTGCAACATTTGCAACAAAAGGAGTAAC
TTCATTCCAAATCTTTCCTTTATTTTGGAAGGCTGTATGTTTGCTTGAGA
TGTCCTGTAACTTACGTGTTGTTGCAGCAACTTCTGATGGGGCCTCACCA
AACAGAACCTTTTTCAAAATGCACAAAGGCTTTGTTTCTGGAGACATAGT
GGTTTATAGGACACCAAACATTTATGCTGAAGATGAGAAcacctttattt
attttttctccgATATACCTCATCTTTTGAAAACTCTTAGGAATAATTTA
TTACACTCAGGATCTGAAGGACACACTAGATTTATGTTTAAAGATGGTGG
ACACATTTTATGGAAACACATAAAAGATTACTACATGGAGGATTCTTTAT
CTTGCTACCGACACCTCAATAAAATCACTCCAGACCATATTTTTCTGACA
AGCTATTCAAAAATGAATGTTAAATTGGCCGCACAATTGTTGAGTTCTAA
GGTAGCCACGACACTCAAAGAATATGGTGATGATGAAACCCAAGAAACAG
CGGTTTTTTGTGAGTTGGTTGACAAATGGTTTGATTGTGGTAATGTTAGA
CACCCTGATGAACACAAAAGGAATATCAAACCTGATCAGAAGCCTTTTGA
ATCATTAACAGATGCACGTTTTGACTGgctggaaaataaatttttgaaat
actttcaaGATTGGCTCAAGTGGATAAACACCGCACACCCGGNGAAACCT
TTTGAATCATTAACAGATGCACGTTTTGACTGgctggaaaataaattttt
gaaatactttcaaGATTGGCTCAAGTGGATAAACACCGCACACCCGAGCA
TGAAACCTGAAATTAAGGGTAGAATGTTTATTAGCTGGCAAACTTACGAA
GGACTTCAGATTTCCACCATGTCTCTTATCCATTGTACCAAGTATCTTTT
GAAGAATGGAATCAAATATGTTCTGACCAACAAATTCAATCAAGATGATT
TGGAAAATTACTTTGGTTGGCAACGATCGATTGGAAGAAGGAAAGACAAT
CCAAGCCACCAACAAGTAAGAATCAATGACAACATTATAAAATCGTCACT
ACATGTTGCACCTAATGGAACAAATTGTGAGAACAGCACAACAACACGAT
GGTCAATCAGCGATGAGCCTGTCCCCAAGAAACCCCGTACTTAGTTTAGA
ACGTTTTTtacttttatattttgaatttttatattttgtcatacttttat
attttttacatttttaattgttttacaCATTTTGGTTGCCGTTATTGTTA
ATAGCACTGTCAATTAAAGGTTGATAATTTGTTATATTAAAATTTTATGA
GAATATTTATTATCCATCttttaaaatatactttttttgaAGCTAGTAAA
TTTGTTGGTTTTGTTTGTGTAATATTCTTTTGgttagtttttgtttaaaa
tgcatGTTTTTTAGTGCATGATGCATTACCACGCATGTTCAGTTAAGTCT
TCACATATATCAGAGATTTAGAGTTTTTGTTCGATTCGCATTACTTGCAT
TTTAAATTATGGATCaattttgttattattataatattGAATGTATCACA
TTAGAAACTGTTTTGAAGATTATGAATGCACTTGTAATTAtatgaattta
Run BLAST on NCBI

transcript from alignment at sc0000019:924410..928702-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002337 ID=TCONS_00002337|Name=TCONS_00002337|organism=Clytia hemisphaerica|type=transcript|length=4293bp|location=Sequence derived from alignment at sc0000019:924410..928702- (Clytia hemisphaerica)
TTTTTTGCTTGGAGGAGGTTGTCTTTTGCAAAATAAATGTGTATTTTTGT
TATTAGCTCACCTGTTTTGGAGTTATTAATAAAAGTTATTGACTTGGGAG
GGATCATATATATCCAGAAGAAACTTTTATGTATCTTCTTTTTTAGTTTT
TTACTTTCCAGATCAAATTTTTAAAGTTGAAAGGGAGGGTACTCAGCTGA
TGGTACGTAGGTTGGCATGTATAATTTTATAAACATGAAAAGTAAATACA
AAATGAAGGAAGAAAACGTATATTTAGGTTGATAGTATCTATATGGTTTG
TTATTTTCCCTTTCAGTGAATTTTACATCTAACAAAATTTAGGCTCATGC
CTGGAGAAAATTGTGCCATCGTTGGTTGTGGGATCTGTCGGAATCAAAAT
AAGTATGGATTATTCAAAATCCCACCACTTACAAAGCCTGAATGGCGTCA
AAACTTTTTGGCTTAAATTTTGAAAGGCCGAATTGTCGATGAGAAATTCA
GTAAGAAGATTGAATCAAGCAAAGTTTGGGTTTGTGAGAAACACTACGAA
CCTGATGCTCTTTATCACTGTAAGTATATAAAGCATGATTTATTTTTTAA
TTTTTTGTTTAATTAGCTACTTTTGATGCATGCTCACCTGAAGTCTTATT
TTTGTAAAAGATGGAAATTAATTTTAAAGAAATTAGATTAGATTTTAAAA
TGCATGTTTTACTTCAGGTCTAATTTTTGTAAGAGATAGAAATAAATTTT
CAACATTATTAGGTTAGATATTATATCATAGTGATTGAGGAGCTACTAAT
ATAAGAGGGCATGTATTTTTTAATTTGAAAATTTTTTGATTTTAAATTTT
AAGATGCAACACGAAAAGTACCAAAGGAGGATGCAATTCCAACATTGAAC
CTCCCTGGCATGTCAAACAAAACTTACGTTCCCCGCCCAATTAATTCCAT
TGTCAAAAGAGAACAAAACCACCAACCTGCAAATATCCCATCCACATCTA
TCAAAACTTTTTCCATTTACACATATCGTCAATTCTTGCAGAATGCATCA
ATGAGCATCAACAATAATTGGCAATATTCATTATTAGATCAGTTCTCAAC
TTTTCGTCTTTTTGATTCACGCTTTCAAGTTCCAAAATTTGATTTAGTCG
TTGACTGTCATTTAAAGGTGAGTTTGTAGGTATTCAGTATTCAGTTAAAA
TGTACATTATATATAGAGGCTTTTTAGAGTATTGTACAACTATGAACTAT
ATTGAAGATATATGAAGATATATTGCACGCTTCTACAGTTAAATTCATGC
ATGCTCAAAATATATTTTTTTAAATTTTTCCTATTCATCAATCATATTAT
ACGCTAACGTACATGATCAATCCATGCATGACCAATCATTCGTAAATTAT
ATTTTTAACTTTAGGTAACATTAAGAGTTTTTGGATGGTTCAGCACCTGC
CCTTTTTCTATAATGTCTATGCCAATCAACACAATCTTAACAAAGCTTGA
AACCATGAATTTATGTGTGGGAATCAGTAATTTGGAATTGGTTAACAACG
ATGCAATCAGGCATCACACAATTTCAAAGCTACAAACAGTGAAACAATCA
GACCTTCCTGATGCTTTTGAAAATCTTGTTGAAAGACACTTTTACAGAAG
CCCATTTTGCTCATTATTAGTTGGACACCAACTTAAGATTTGTACGCATT
GTACTTCTTTGGAGAAGAAGGAAATGAATGCCTTGAAAATGAAGCAAAAT
ATGCAAGCAAAACCCATTCCACTTAAAGCTCCTATAACCGCAACATCAGT
AGCTAGGTTGAAAGCGACAATCCTGGAACAAAGGGCCCTAAATAAAGATC
TAACAAACCAGATCAGCTATTTACAAAATGAACTTGATCGAAAATCTGTG
ATTGTTAACAAAGAATTACATCAAGATCTAAAATCTATATTCGATCAAAC
TGACCAACGCAGGATTTCTCCATTTATGAAATTGTTTTGGGAAGAACAAA
TGAAGTATTTAAAGCAACACCCAACTCAAGTAAGTTATGTTATTTTTGCA
ATAATTGCTATTATATTTCAGATAAAAGTATCCTTTTGGATTATTTATTA
TAGCTATATTCTATCTAGACCTGCATGTTCAAGTTTTTATCAAACAAGAT
TAGAATTTTGTCATTTGCATTGCATACATGAATTTTGCTTAAAAATTTTT
TTTATGAAATTAAGCTCCAAAACATTTAACTTTTAAAGGTGAGGTACCAT
CCAATGATTATCAAATATTGTCTAACATTGTATGCCAAGTCACCTTCAGC
CTACAAATATTTTCGTTATGATGAGAAAAATGGAACTGGGGCACTCATCC
TTCCTTCAGAGAGGACATTGAGAGACTATCGCAATTACATCCGTCCGAAG
ACCGGTTTTAATCAGCAAACTATCGAGAGATTGACTAAGTTAACAGAAAA
ATTCAGTAATCAAGAGCGTTTTGTTGTTCTATCGTTTGACGAAATGAAAA
TCCAGGAAGATTTGGTATGGAATAAGCATACTGGGGAACTTGTTGGTTAT
GTTGACCTTGGTGATGAATCTCTCAATGAAGCTACTTTTAAAAACTGTGA
TGATCTTGCCACACATGTTTTGGTTTTTCTTGTGAAAAGTGTGATCAACC
CACTATCATTTTCTTTTGCAACATTTGCAACAAAAGGAGTAACTTCATTC
CAAATCTTTCCTTTATTTTGGAAGGCTGTATGTTTGCTTGAGATGTCCTG
TAACTTACGTGTTGTTGCAGCAACTTCTGATGGGGCCTCACCAAACAGAA
CCTTTTTCAAAATGCACAAAGGCTTTGTTTCTGGAGACATAGTGGTTTAT
AGGACACCAAACATTTATGCTGAAGATGAGAACACCTTTATTTATTTTTT
CTCCGATATACCTCATCTTTTGAAAACTCTTAGGAATAATTTATTACACT
CAGGATCTGAAGGACACACTAGATTTATGTTTAAAGATGGTGGACACATT
TTATGGAAACACATAAAAGATTACTACATGGAGGATTCTTTATCTTGCTA
CCGACACCTCAATAAAATCACTCCAGACCATATTTTTCTGACAAGCTATT
CAAAAATGAATGTTAAATTGGCCGCACAATTGTTGAGTTCTAAGGTAGCC
ACGACACTCAAAGAATATGGTGATGATGAAACCCAAGAAACAGCGGTTTT
TTGTGAGTTGGTTGACAAATGGTTTGATTGTGGTAATGTTAGACACCCTG
ATGAACACAAAAGGAATATCAAACCTGATCAGAAGCCTTTTGAATCATTA
ACAGATGCACGTTTTGACTGGCTGGAAAATAAATTTTTGAAATACTTTCA
AGATTGGCTCAAGTGGATAAACACCGCACACCCGGNGAAACCTTTTGAAT
CATTAACAGATGCACGTTTTGACTGGCTGGAAAATAAATTTTTGAAATAC
TTTCAAGATTGGCTCAAGTGGATAAACACCGCACACCCGAGCATGAAACC
TGAAATTAAGGGTAGAATGTTTATTAGCTGGCAAACTTACGAAGGACTTC
AGATTTCCACCATGTCTCTTATCCATTGTACCAAGTATCTTTTGAAGAAT
GGAATCAAATATGTTCTGACCAACAAATTCAATCAAGATGATTTGGAAAA
TTACTTTGGTTGGCAACGATCGATTGGAAGAAGGAAAGACAATCCAAGCC
ACCAACAAGTAAGAATCAATGACAACATTATAAAATCGTCACTACATGTT
GCACCTAATGGAACAAATTGTGAGAACAGCACAACAACACGATGGTCAAT
CAGCGATGAGCCTGTCCCCAAGAAACCCCGTACTTAGTTTAGAACGTTTT
TTACTTTTATATTTTGAATTTTTATATTTTGTCATACTTTTATATTTTTT
ACATTTTTAATTGTTTTACACATTTTGGTTGCCGTTATTGTTAATAGCAC
TGTCAATTAAAGGTTGATAATTTGTTATATTAAAATTTTATGAGAATATT
TATTATCCATCTTTTAAAATATACTTTTTTTGAAGCTAGTAAATTTGTTG
GTTTTGTTTGTGTAATATTCTTTTGGTTAGTTTTTGTTTAAAATGCATGT
TTTTTAGTGCATGATGCATTACCACGCATGTTCAGTTAAGTCTTCACATA
TATCAGAGATTTAGAGTTTTTGTTCGATTCGCATTACTTGCATTTTAAAT
TATGGATCAATTTTGTTATTATTATAATATTGAATGTATCACATTAGAAA
CTGTTTTGAAGATTATGAATGCACTTGTAATTATATGAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001234XLOC_001234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002337-exon-sc0000019-1575043694:928134..928702TCONS_00002337-exon-sc0000019-1575043694:928134..928702Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1575043694:926674..927849TCONS_00002337-exon-sc0000019-1575043694:926674..927849Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1575043694:924410..926464TCONS_00002337-exon-sc0000019-1575043694:924410..926464Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1510915933:928134..928702TCONS_00002337-exon-sc0000019-1510915933:928134..928702Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1510915933:926674..927849TCONS_00002337-exon-sc0000019-1510915933:926674..927849Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1510915933:924410..926464TCONS_00002337-exon-sc0000019-1510915933:924410..926464Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1491911889:928134..928702TCONS_00002337-exon-sc0000019-1491911889:928134..928702Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1491911889:926674..927849TCONS_00002337-exon-sc0000019-1491911889:926674..927849Clytia hemisphaericaexon
TCONS_00002337-exon-sc0000019-1491911889:924410..926464TCONS_00002337-exon-sc0000019-1491911889:924410..926464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:924410..928702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168237	0.185207	0.129868	0	0.00270272	0.292842	0.507687	0.546162	0.159181	5.63624e-08	0	0	0.234377	0.187728	0.162136	0.186743	0.629105	0	1.5923	0	1.50108	1.17709	0.32211	0.420115	0.367395	1.34076	0.713758	0.0720837	0.158979	0.341925
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top