|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002324 ID=TCONS_00002324|Name=TCONS_00002324|organism=Clytia hemisphaerica|type=transcript|length=2201bp
attttaaaaatatgtcgTTGTGAGAAAGGAGGGagaatattttcattaaa
aagaacaTCGTCAGGAGGATCAGCCATCAATATCGAATCAAACGGATGAA
TATTGCCAAAAAATGGATATGTTTAGATCAACTTTTTCAATGTTCATAAT
CATCGGATACTTAGGAAAAGTTGAAACGTTGAAATGTTACACATGCTCCA
CTCTGGATCCACAAGTTTGCAAACTCCAACAACAGAGGGATGAATTTCAG
AAAGAATGTGGACCTCGGACAACGTGTGTGACCATGACATATAAACAAAT
GACAGGTGGTGAAGAGGTCACACGATTTATAAAGAAATGCGGAACACCTT
ACTCACAACGATGTGATGATAGTTGTAGTAATGTTGAACATCTAGTCCCT
AAAAGTTGCAAGACATCCTGCTGTACATCAAATCTTTGTAATGAAGAAGT
TAACACAACTGTTATTTGGTATGCACTCATTGGAAAACCAAATCCAAATT
CAAGTCAACAAGTCCAATTCAATGGCTTGTTATGGCTACTCATTAGTTTG
ATTTCTTcaatatattttgtataaaaacttaaggtggtagtctactgaga
aatggaaaaagtcatttttttactttttttgtaataacttttgaaatttt
taagatatctcaatgaaactttccacaatggTAGTAAAACTATTAACAat
gcaaaatatgaaaaaaaaattctaaaaatagcacaGACGAGGGTGATACC
GACCAGGGGGTTATGTACTATAGTTTTCTCCATACAGGTTTTTAAAGACT
TCTAAAACGTTTTagcaaaagatttttggtaTGGTGGTTGGTATTCATGA
AAGGCAGAtgatgagtgaaaaaaaaattaataattattttccagggggtc
tggaacctaaaaaacgtgatttttgagatttagaaccaatgacagatttt
tttgaattttttcttcactCATCCTCTGCCAAATGGTACATGAAACaacc
cctgaaaatttcatggaGCTAGCACttttcaatcccgagaaaaaccTGAA
TAGGCGTtagcaaacccccggaaacgcgttttgagaaaatcaaagaaaaa
gacaaaagtcTGCAAAAATGGGTCTTATTTTAAgctggaaagctcttttc
aaaaaatttcttcactgaatACTCATCCAACCAGTCAGGTttcaaaagtt
aaagtaaaacatttcacaaaaattgataaaatatccaaaaatcaacaaaa
acatctTGCGCTTAAGTCATGTATACATAGCAAAGTTTGCGGTAATCTTG
cgataacatcaaatttgggtgaaaacagCCACATAAGTGTGTCAAAATGT
TCATTGAAAGTCCAGCATGACTCTCTGTAGGcatgaaaactttttatgtg
catatttttattcacatagACTAGATGACAATGAGCAATGAGCTGGGCTT
GAGCTTGACCGAAGGAAGGCTGTTAGGAGTGGCGGGTGTCAGATGAGAAT
GTGATGTGCGTCTCCAGAAGTTAggtccagttcattataatgAACATTTC
CATctctgttacatcatgttgtgcttggaaatatctcagttACATTTAAA
TCCACTACAAAACATTATGTGAGCCACCAAAAGCACACCGCCTAtgctct
caaaacaaaatggcggcaacttaaatgtttttcgtCGTAGAAATCCAGCA
ACATAACCAATGTACAGCAACTTTATAGCTTCTATAGGGTCTATTCTTCA
TTTAAACAaatcatttccatcaaagaaattatgttttgatctaaaacttg
ccaagaaatctgcagaatcatgcttacagcttgcttttcagcttgttttg
atgtgttacactactgaagctaccatctttaattttaaggatgacgtaat
gccacggaaaataatattttgacgcttgaaaagggcgtaaaaagagcttt
cttttggTGTATCACATTGCTATGTTCCGACCGAGATTGAAGAAATAAGT
CCTTAGCAACATGATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCA
gcaggacaaaaatgctcactgcgacctgaaaaataaagatatctctctga
aatttccaggagatgttcagaaagacctaaggatctcaaaacacccaaaa
accaaaattcgacaatttttcgatgattttcccTTTCTcagtagactacc
a Run BLAST on NCBI protein sequence of TCONS_00002324-protein >TCONS_00002324-protein ID=TCONS_00002324-protein|Name=TCONS_00002324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MDMFRSTFSMFIIIGYLGKVETLKCYTCSTLDPQVCKLQQQRDEFQKECG
PRTTCVTMTYKQMTGGEEVTRFIKKCGTPYSQRCDDSCSNVEHLVPKSCK
TSCCTSNLCNEEVNTTVIWYALIGKPNPNSSQQVQFNGLLWLLISLISSI
YFV Run BLAST on NCBI transcript from alignment at sc0000019:718070..721058- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002324 ID=TCONS_00002324|Name=TCONS_00002324|organism=Clytia hemisphaerica|type=transcript|length=2989bp|location=Sequence derived from alignment at sc0000019:718070..721058- (Clytia hemisphaerica)
ATTTTAAAAATATGTCGTTGTGAGAAAGGAGGGAGAATATTTTCATTAAA
AAGAACATCGTCAGGAGGATCAGCCATCAATATCGAATCAAACGGATGAA
TATTGCCAAAAAATGGATATGTTTAGATCAACTTTTTCAATGTTCATAAT
CATCGGATACTTAGGAAAAGGTATTGCTTTTCAATTATCCAAATTTTCTA
CCTTATAGAAGAACTGAAAATTATATCGAACTTTTCTCTACTTAAAAAGA
AACCGGCACGTCCAGTCTCCGATTAAAGAGCAGTATCAAGGAGTAAGAAA
TGGGTAAAATAAATATATCAGCAAGTTAAAGATTCCCGCCTTTTAAAAAT
GAGGAATAAGGTCTGGCCGATAATTTCGTTGTAAATATCCGCCTCTTGTT
ATAGATAGAAAGACATGTAAATCATTGGGCTTTTCTAGAAAAAACCGTAT
ACCCCCTGAGGAGGTCAATTTCCGTTCCAAGGGGGTAAGGTTTGATATGT
GGAGGAATTCCATAGGGAGATACAACAATCTGTCAAAAATAACTGGAATT
TCCATGGGGGTAGCCTTTTAAATCCTACTAAAATTCAGAATTCCAGAGGA
GTTTAAACCTGAAATTGCCTGGAATTCCAGGGGGTTACAGCATTTCCAGC
CACAAAATGATGGACCTCCTCAACAGGGGGTATACGGTTTTTTTCTGGAA
AAGCCCATTCTCTATTGGTTTCTTTTTCAGTTGAAACGTTGAAATGTTAC
ACATGCTCCACTCTGGATCCACAAGTTTGCAAACTCCAACAACAGAGGGA
TGAATTTCAGAAAGAATGTGGACCTCGGACAACGTGTGTGACCATGACAT
ATAAACAAATGACAGGTGGTGAAGAGGTCACACGATTTATAAAGAAATGC
GGAACACCTTACTCACAACGATGTGATGATAGTTGTAGTAATGTTGAACA
TCTAGTCCCTAAAAGTTGCAAGGTGAGAAAAATAGTTTACCTGCACTTTT
GAACACCACCAGGGAACAATGAATGAAGATGGCCCCAAGAAATTTTAGCC
TAAAAATCACTAAAAGTATACACATTTTGGCTTTAAACCCTGGGCATTGA
GGAAACCATAAAAAAGATCTAAAAATTTAAGTATAAAGAAGTGTTTCAAC
ACTAGGTTACTTAGTTTGAAAATACTAATGTAACTTTAATTCCTTTACAG
ACATCCTGCTGTACATCAAATCTTTGTAATGAAGAAGTTAACACAACTGT
TATTTGGTATGCACTCATTGGAAAACCAAATCCAAATTCAAGTCAACAAG
TCCAATTCAATGGCTTGTTATGGCTACTCATTAGTTTGATTTCTTCAATA
TATTTTGTATAAAAACTTAAGGTGGTAGTCTACTGAGAAATGGAAAAAGT
CATTTTTTTACTTTTTTTGTAATAACTTTTGAAATTTTTAAGATATCTCA
ATGAAACTTTCCACAATGGTAGTAAAACTATTAACAATGCAAAATATGAA
AAAAAAATTCTAAAAATAGCACAGACGAGGGTGATACCGACCAGGGGGTT
ATGTACTATAGTTTTCTCCATACAGGTTTTTAAAGACTTCTAAAACGTTT
TAGCAAAAGATTTTTGGTATGGTGGTTGGTATTCATGAAAGGCAGATGAT
GAGTGAAAAAAAAATTAATAATTATTTTCCAGGGGGTCTGGAACCTAAAA
AACGTGATTTTTGAGATTTAGAACCAATGACAGATTTTTTTGAATTTTTT
CTTCACTCATCCTCTGCCAAATGGTACATGAAACAACCCCTGAAAATTTC
ATGGAGCTAGCACTTTTCAATCCCGAGAAAAACCTGAATAGGCGTTAGCA
AACCCCCGGAAACGCGTTTTGAGAAAATCAAAGAAAAAGACAAAAGTCTG
CAAAAATGGGTCTTATTTTAAGCTGGAAAGCTCTTTTCAAAAAATTTCTT
CACTGAATACTCATCCAACCAGTCAGGTTTCAAAAGTTAAAGTAAAACAT
TTCACAAAAATTGATAAAATATCCAAAAATCAACAAAAACATCTTGCGCT
TAAGTCATGTATACATAGCAAAGTTTGCGGTAATCTTGCGATAACATCAA
ATTTGGGTGAAAACAGCCACATAAGTGTGTCAAAATGTTCATTGAAAGTC
CAGCATGACTCTCTGTAGGCATGAAAACTTTTTATGTGCATATTTTTATT
CACATAGACTAGATGACAATGAGCAATGAGCTGGGCTTGAGCTTGACCGA
AGGAAGGCTGTTAGGAGTGGCGGGTGTCAGATGAGAATGTGATGTGCGTC
TCCAGAAGTTAGGTCCAGTTCATTATAATGAACATTTCCATCTCTGTTAC
ATCATGTTGTGCTTGGAAATATCTCAGTTACATTTAAATCCACTACAAAA
CATTATGTGAGCCACCAAAAGCACACCGCCTATGCTCTCAAAACAAAATG
GCGGCAACTTAAATGTTTTTCGTCGTAGAAATCCAGCAACATAACCAATG
TACAGCAACTTTATAGCTTCTATAGGGTCTATTCTTCATTTAAACAAATC
ATTTCCATCAAAGAAATTATGTTTTGATCTAAAACTTGCCAAGAAATCTG
CAGAATCATGCTTACAGCTTGCTTTTCAGCTTGTTTTGATGTGTTACACT
ACTGAAGCTACCATCTTTAATTTTAAGGATGACGTAATGCCACGGAAAAT
AATATTTTGACGCTTGAAAAGGGCGTAAAAAGAGCTTTCTTTTGGTGTAT
CACATTGCTATGTTCCGACCGAGATTGAAGAAATAAGTCCTTAGCAACAT
GATTTTTTCCGTTGCTAGGGCGATTTTTCAAGCACCCAGCAGGACAAAAA
TGCTCACTGCGACCTGAAAAATAAAGATATCTCTCTGAAATTTCCAGGAG
ATGTTCAGAAAGACCTAAGGATCTCAAAACACCCAAAAACCAAAATTCGA
CAATTTTTCGATGATTTTCCCTTTCTCAGTAGACTACCA Coding sequence (CDS) from alignment at sc0000019:718070..721058- >TCONS_00002324 ID=TCONS_00002324|Name=TCONS_00002324|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0000019:718070..721058- (Clytia hemisphaerica)
ACATCCTGCTGTACATCAAATCTTTGTAATGAAGAAGTTAACACAACTGT
TATTTGGTATGCACTCATTGGAAAACCAAATCCAAATTCAAGTCAACAAG
TCCAATTCAATGGCTTGTTATGGCTACTCATTAGTTTGATTTCTTCAATA
TATTTTGTATAATTGAAACGTTGAAATGTTACACATGCTCCACTCTGGAT
CCACAAGTTTGCAAACTCCAACAACAGAGGGATGAATTTCAGAAAGAATG
TGGACCTCGGACAACGTGTGTGACCATGACATATAAACAAATGACAGGTG
GTGAAGAGGTCACACGATTTATAAAGAAATGCGGAACACCTTACTCACAA
CGATGTGATGATAGTTGTAGTAATGTTGAACATCTAGTCCCTAAAAGTTG
CAAGATGGATATGTTTAGATCAACTTTTTCAATGTTCATAATCATCGGAT
ACTTAGGAAAAGACATCCTGCTGTACATCAAATCTTTGTAATGAAGAAGT
TAACACAACTGTTATTTGGTATGCACTCATTGGAAAACCAAATCCAAATT
CAAGTCAACAAGTCCAATTCAATGGCTTGTTATGGCTACTCATTAGTTTG
ATTTCTTCAATATATTTTGTATAATTGAAACGTTGAAATGTTACACATGC
TCCACTCTGGATCCACAAGTTTGCAAACTCCAACAACAGAGGGATGAATT
TCAGAAAGAATGTGGACCTCGGACAACGTGTGTGACCATGACATATAAAC
AAATGACAGGTGGTGAAGAGGTCACACGATTTATAAAGAAATGCGGAACA
CCTTACTCACAACGATGTGATGATAGTTGTAGTAATGTTGAACATCTAGT
CCCTAAAAGTTGCAAGATGGATATGTTTAGATCAACTTTTTCAATGTTCA
TAATCATCGGATACTTAGGAAAAGACATCCTGCTGTACATCAAATCTTTG
TAATGAAGAAGTTAACACAACTGTTATTTGGTATGCACTCATTGGAAAAC
CAAATCCAAATTCAAGTCAACAAGTCCAATTCAATGGCTTGTTATGGCTA
CTCATTAGTTTGATTTCTTCAATATATTTTGTATAATTGAAACGTTGAAA
TGTTACACATGCTCCACTCTGGATCCACAAGTTTGCAAACTCCAACAACA
GAGGGATGAATTTCAGAAAGAATGTGGACCTCGGACAACGTGTGTGACCA
TGACATATAAACAAATGACAGGTGGTGAAGAGGTCACACGATTTATAAAG
AAATGCGGAACACCTTACTCACAACGATGTGATGATAGTTGTAGTAATGT
TGAACATCTAGTCCCTAAAAGTTGCAAGATGGATATGTTTAGATCAACTT
TTTCAATGTTCATAATCATCGGATACTTAGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002324-exon-sc0000019-1575043694:720889..721058 | TCONS_00002324-exon-sc0000019-1575043694:720889..721058 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1575043694:720087..720328 | TCONS_00002324-exon-sc0000019-1575043694:720087..720328 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1575043694:718070..719858 | TCONS_00002324-exon-sc0000019-1575043694:718070..719858 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1510915933:720889..721058 | TCONS_00002324-exon-sc0000019-1510915933:720889..721058 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1510915933:720087..720328 | TCONS_00002324-exon-sc0000019-1510915933:720087..720328 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1510915933:718070..719858 | TCONS_00002324-exon-sc0000019-1510915933:718070..719858 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1491911889:720889..721058 | TCONS_00002324-exon-sc0000019-1491911889:720889..721058 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1491911889:720087..720328 | TCONS_00002324-exon-sc0000019-1491911889:720087..720328 | Clytia hemisphaerica | exon |
| TCONS_00002324-exon-sc0000019-1491911889:718070..719858 | TCONS_00002324-exon-sc0000019-1491911889:718070..719858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:718070..721058 - |
Blast
The following BLAST results are available for this feature:
|
