TCONS_00002322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002322
Unique NameTCONS_00002322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002322 ID=TCONS_00002322|Name=TCONS_00002322|organism=Clytia hemisphaerica|type=transcript|length=2013bp
tatcgaaataaggaaaaaactaaaatattttgataaaatattatgTTCCG
TTGTTGTCTTTCTATCAGAAAGCAATGATGTTATATACGTTACAAAGTAT
ATTTGTAATATTCTCTTGGAATATAGGTTACGGGTTTGCATGTCAAAAGA
TTTTAGGAGTGCCGAGAAATAATCATGGAATCAAACCGATTTTGCTGGTC
GACGAAGAAACTGAAATCACCAAAGGCAAGCTTATTGCAATTGTCCCTGT
TTTGAGTCCAGAATGGTCTGTCGCATTCAATATTAGATTAACACAAGCTG
CTGGGAGTGTACATAGAAATATCTTTCGAATGGCAGAAATAGATGAGAAC
GGCTTTACCCATGGCACTCGCATACCTGctgtatttattttgaaagatac
GTCAGATCTGAGCATTTACAGTCCTGTTAACGATGACCCGCATAAATCTT
TCAAGATCCCAAATTTGTTAATGAACCAAACATATCATGTGTTAATTCAA
CAAAGATATGTTAGCGGTGGtgattacaaattttcaatcatcttTGATGG
CGTTGAAGTTTTTTCTCAAATCAACACAAGTGCTCGTCAATTTTATAATG
TCAAAGTCTACAACAGTGATCTTTGGTATCAAGCAGCTTTTGGTTATATT
AGTAAATTTGAATTAACCAATTTTCTTTGAAACCCAACTAAGACTAGGAG
TGGGCTATAAATGAATGTTCgttcaaaatatgtcaaactaaattttttga
ggTCTAAATTGTCAGTGTACACTGGAAAAGAATGTTTTGTATGATCTTTT
GAATAAAGAAAGTGGGAAGCCTTATTCAAACCCCACCTTATAGATCCATA
CAGCAACTATTTTTCATAGTTCTAATAAAGATGATTAGAGGTCAACAGCA
GTGAATAATCATCGGTTTTGGCTAAagtttggtacagatgttcttcAGGG
TAGGTTCTTAAGTTTGCTGTGAAAATATagcttgaaaaaatatttagggT
CTTTTGGCTGTATCCTTTGGCCCTTGATTGACTTGAGAGTTGTTGAGTTG
ACTTGGGAAACGCAAAAATCGTCATACAATGCTGTAATTCGGCAAAGTCC
CTCTTCAGAGATTAAGTAAGATAGTTGCTCTTTGAATTTTACGAGAAATT
CAACTTTCCTGTTTGGAAAGTCTTTCTTAGTCTTGAATCTATAGGCTAGC
AGTCGCCATGGTCGATTTTAAACTTAGCTATCAAAGTACTGCATAATACT
GGATAATGGACTGTACTTAATATTTACCTGgtaacaaaaaaagttattga
atATAATTCCTTATTTTGAGAAGCAAGTTGGactttgtttatattttgcG
ACACCTGACTTTATCAAAATTGAGAAATGGGCCTAGGGTTGtcctaaatt
tcaaaaatattttttgcggaACTTTAGAGTGCgtataccaaattttagcc
aaattcaATGGTTCGTTGTGTCTACAGTcaatttagaaactttttcaacg
AACCACATTTCTGTCTCACCAGGATCTGAACAAGGGGCTCCCATTCTTTT
TATGTGAGCAATATCACAAAAGTTCTTTTTAATCCTATCTAGTAAATATG
TATTAAGGAAGTCAAAAAAATCAGTTTGATGTGCGCGCCCAGTCGAGAAA
AGTGAAATTCACCCATGTATAACCCACTCCTACCTAAGATGAGAATACCA
GAAAAACAGTTGTTagcatcaaattataaaaaaggtttctttttttccat
ttttatttttaaaattttatgtaattatttttctcGAAGAGTGTTGTCCT
CGGAACGCTCagaattatctttttaacggtTGATAATTTGTAGCACTGGT
TGAAAGAATGCAAGCACATATAATTTGTGTCCAATAGCGCTTAgttatgc
aaacgtcatgattATCACTTCTCTGATTATACCGAATTCCAATTATTACT
TCTTCTTTGTAATTGAGCGTAACTTAAGTGCAAGCGTAATAAAcgcaaag
ggtgatgggattg
Run BLAST on NCBI

transcript from alignment at sc0000019:685933..689427-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002322 ID=TCONS_00002322|Name=TCONS_00002322|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at sc0000019:685933..689427- (Clytia hemisphaerica)
TATCGAAATAAGGAAAAAACTAAAATATTTTGATAAAATATTATGTTCCG
TTGTTGTCTTTCTATCAGAAAGCAATGATGTTATATACGTTACAAAGTAT
ATTTGTAATATTCTCTTGGAATATAGGTTACGGGTTTGCATGTCAAAAGG
TATGTTTATTTGAAATATAAATTACTGAGGGGGGCGGACGGGGTTTGCGA
TTTCTGAAATACCGAATAATTTTGCCAAAATTTCTGAAATTCCGTAAAAA
AATACTTGCGATTCCGCTAACGATTTTCTGGGTATTTTTCCTCGTTTTGA
CTGATTTGATTTTTCATGTATGAATTCCGAAAAAGGAGGATAAAAACTTT
ATAATACCGAAATTTCGAAGCAAAATTTCATGGATTTCTGATACCAAAAC
AATTTCAGAATTCCAAAATACCGACGAAATTTTGCCCGATTTCCGAGAAT
CTGAAGAAAAAAGAATCGATTTCTGCAATTCCGATACACCGTATGACTCC
CACTTTACTTTACTAGCAAAAATAAAGCTGGCTCTGAAAGGAAGATTCCC
TGAATCTATGAAAAATTCCCAAAGATTAGATAAAATATTTAGCGTTCAAA
GTAATAAAGATCAACACCAAACATTTGCGTTTTTCATTGGAATCGTGCAT
CTGTTACATGCTATTTTCTATTCAATCTAAAGAGATAAATGCTGCAGTGA
TGTAGGAGAACAACCTACACTAACATCACGAATCCCTATTTCATAGGACT
TCATCTTTCATACACGTTTTTTTTTTATTAGAACCCCAGTTTATAAGAAC
ATTGAGGCTGAAATTCGACGAAAAATTAAGAACATCGTAAGAACACGCCT
AGCCTCAGTTTGGAAAAAAATGATAAGAAACTAAAATTTTTTCCTCTTTT
CAAGCAGTTTTAACCGAACTTAGGGATGGATTTTCTTAAATCGAGAGTCA
AATTCTGTCCAAATTTTTGAAATTTTACCAATATCAAGTGCTCTTTATTT
TGCATATATTGTCTATTTAGAGTAGTCTGAAAAATTAAGAACGCATTTAA
GGACATTTTAGGTTGAAAATTGTTGGCTCAACCAAATTTTAGGTGTTCTA
ATAAAAACAACGTGTAGTGTACACTTATGGAAAACGGATTGAGGAGATTA
TCAATGGTGAAACTATTTCAATAATTGAATAAGACTTTAAATTTTTCATA
AAATCAAATAATATGGTATTCCTTTTATTTAGATTTTAGGAGTGCCGAGA
AATAATCATGGAATCAAACCGATTTTGCTGGTCGACGAAGGTAAGACTTT
AAGCGCATGTCTTAAGAAAAGGAGAAAACAAAATTTTCATTTCAACAGCC
CCTGCCACCGGAAGAATTAGTAATATTATAGTCCCGAGTATTTTTCACTT
TCTTCCCTAGCTTTCTGGCTTGAAACAATTGAATTCAAATCTCAGTCTTA
AAACCATATGAATATCAATCCACATCGAGTTTCAGTCCGTTAATTTTATC
CCAATCGTGTTGAAAGAATCTTGCCATGTCTATGAAAAGGGGCTATTTCT
TTCACTCTTTAATGTGGTTGGATCTATCCTAACCTCGTTAAGATCTCACC
ATTTATTTTGCCTTCCGTCACCCACCAGATTAATTTTCCGCCAAACTTTA
CATATCATATTTGTCAGGTCAGCAAAATTGTAATTTCAGAAACTGAAATC
ACCAAAGGCAAGCTTATTGCAATTGTCCCTGTTTTGAGTCCAGAATGGTC
TGTCGCATTCAATATTAGATTAACACAAGCTGCTGGGAGTGTACATAGAA
ATATCTTTCGAATGGCAGAAATAGATGAGAACGGCTTTACCCATGGCACT
CGCATACCTGCTGTATTTATTTTGAAAGATACGTCAGATCTGAGCATTTA
CAGTCCTGTTAACGATGACCCGCATAAATCTTTCAAGATCCCAAATTTGT
TAATGAACCAAACATATCATGTGTTAATTCAACAAAGATATGTTAGCGGT
GGTGATTACAAATTTTCAATCATCTTTGATGGCGTTGAAGTTTTTTCTCA
AATCAACACAAGTGCTCGTCAATTTTATAATGTCAAAGTCTACAACAGTG
ATCTTTGGTATCAAGCAGCTTTTGGTTATATTAGTAAATTTGAATTAACC
AATTTTCTTTGAAACCCAACTAAGACTAGGAGTGGGCTATAAATGAATGT
TCGTTCAAAATATGTCAAACTAAATTTTTTGAGGTCTAAATTGTCAGTGT
ACACTGGAAAAGAATGTTTTGTATGATCTTTTGAATAAAGAAAGTGGGAA
GCCTTATTCAAACCCCACCTTATAGATCCATACAGCAACTATTTTTCATA
GTTCTAATAAAGATGATTAGAGGTCAACAGCAGTGAATAATCATCGGTTT
TGGCTAAAGTTTGGTACAGATGTTCTTCAGGGTAGGTTCTTAAGTTTGCT
GTGAAAATATAGCTTGAAAAAATATTTAGGGTCTTTTGGCTGTATCCTTT
GGCCCTTGATTGACTTGAGAGTTGTTGAGTTGACTTGGGAAACGCAAAAA
TCGTCATACAATGCTGTAATTCGGCAAAGTCCCTCTTCAGAGATTAAGTA
AGATAGTTGCTCTTTGAATTTTACGAGAAATTCAACTTTCCTGTTTGGAA
AGTCTTTCTTAGTCTTGAATCTATAGGCTAGCAGTCGCCATGGTCGATTT
TAAACTTAGCTATCAAAGTACTGCATAATACTGGATAATGGACTGTACTT
AATATTTACCTGGTAACAAAAAAAGTTATTGAATATAATTCCTTATTTTG
AGAAGCAAGTTGGACTTTGTTTATATTTTGCGACACCTGACTTTATCAAA
ATTGAGAAATGGGCCTAGGGTTGTCCTAAATTTCAAAAATATTTTTTGCG
GAACTTTAGAGTGCGTATACCAAATTTTAGCCAAATTCAATGGTTCGTTG
TGTCTACAGTCAATTTAGAAACTTTTTCAACGAACCACATTTCTGTCTCA
CCAGGATCTGAACAAGGGGCTCCCATTCTTTTTATGTGAGCAATATCACA
AAAGTTCTTTTTAATCCTATCTAGTAAATATGTATTAAGGAAGTCAAAAA
AATCAGTTTGATGTGCGCGCCCAGTCGAGAAAAGTGAAATTCACCCATGT
ATAACCCACTCCTACCTAAGATGAGAATACCAGAAAAACAGTTGTTAGCA
TCAAATTATAAAAAAGGTTTCTTTTTTTCCATTTTTATTTTTAAAATTTT
ATGTAATTATTTTTCTCGAAGAGTGTTGTCCTCGGAACGCTCAGAATTAT
CTTTTTAACGGTTGATAATTTGTAGCACTGGTTGAAAGAATGCAAGCACA
TATAATTTGTGTCCAATAGCGCTTAGTTATGCAAACGTCATGATTATCAC
TTCTCTGATTATACCGAATTCCAATTATTACTTCTTCTTTGTAATTGAGC
GTAACTTAAGTGCAAGCGTAATAAACGCAAAGGGTGATGGGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001226XLOC_001226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002322-exon-sc0000019-1575043694:689279..689427TCONS_00002322-exon-sc0000019-1575043694:689279..689427Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1575043694:688138..688195TCONS_00002322-exon-sc0000019-1575043694:688138..688195Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1575043694:685933..687738TCONS_00002322-exon-sc0000019-1575043694:685933..687738Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1510915933:689279..689427TCONS_00002322-exon-sc0000019-1510915933:689279..689427Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1510915933:688138..688195TCONS_00002322-exon-sc0000019-1510915933:688138..688195Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1510915933:685933..687738TCONS_00002322-exon-sc0000019-1510915933:685933..687738Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1491911889:689279..689427TCONS_00002322-exon-sc0000019-1491911889:689279..689427Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1491911889:688138..688195TCONS_00002322-exon-sc0000019-1491911889:688138..688195Clytia hemisphaericaexon
TCONS_00002322-exon-sc0000019-1491911889:685933..687738TCONS_00002322-exon-sc0000019-1491911889:685933..687738Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:685933..689427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.90465	1.37608	0.297295	0.155792	0.103343	0.136187	2.46668	3.06127	0.46914	0.655524	0.438512	0.654336	0.654555	1.14222	0.290566	0.0916662	0.0218279	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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