TCONS_00002311 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002311
Unique Name	TCONS_00002311
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1524

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000019:507847..512378-

transcript sequence

>TCONS_00002311 ID=TCONS_00002311|Name=TCONS_00002311|organism=Clytia hemisphaerica|type=transcript|length=1524bp
TTCAAAATATCTATCATCTTTATTTATCGTTTGGAGTGTTGCTAGGCATT
GGTTTAGCCCTTCTTTACACACCGACTTTGGTCATGGTTGGACGATGGTT
TGACAAATACCAAACGCAAGCTACAACTTTTATGATGATTGGAGCTCCAA
TAGGGTCGCTTATATTTAACCCGCTGATGGAGAAAATCATGGAGAATTAT
AACCTAAGGTCTGCGATGAATCTCTATGGTATTATGTTCCTGGGAATAAC
ATTTATNGGGAGCTCCTATAGGGTCGCTTATATTTAATCCGTTGATGGAG
AAAATCATGGAAAATTATAACTTAAGATCAACTACGCAATGACGATAGGA
ATCAGCAGTTCCACAGCAAGTCTTATGTTAGCTGTCTGGTCTGGAAGTAA
TTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAAATCACCGAGAAA
AATTGCTCTCAACCTATCAAATCTCAATGTTTCTAAGCGGAGTTGTCAGC
GCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGTTG
TATTTATGGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGTGA
CGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATACAA
CAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGGTGC
AATGAACGATGCGAAATTATTGAGTGCAAATTACATGTTTGTTTTTACTG
GTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGGATCACA
CATAATCGAACCCGTCAATCAGAGATTCCAAACACAGAGCTCAAGGATGT
GTATATTACTAACCAGAACGAGAGCTTGGACGAATCACACTTACAAAAGG
ATGTGTATATTACTGACCAGAAAAATTCTAAAGAGAACGCAAATTCTTCG
GAATTGCCAAAACAAACCTCAGTCGAAAATTTCTCATTTGATAATAAAAC
TTTCAATGTTGAAATTATCCGGAATGAAAAGGAGTCATTGTCCTCAGTTG
AATTTTCGAAAGATACACAAAATGGGAAAATTGTCTgatgaattttattt
tagtaaCAAAACATTTGTCTATGCCAATGAAGACTGAAAAGAGTGACAAG
AAATCTACcaaatgatcaaaagaaaataaagaacacAGCATAGAAGATTT
CGATAATGAATATTGATTCGAACACAAAGAATTTTATATTAATGTAAAGA
ATATTCTATATTTGACAGGGCGTAACCGAcggggggatacttaggcaaat
TGGGCGCCGGGTAAGTGCGAGCCATATGGGTCCTTCTTTCACACGCACGT
CGAGATCGTCTCTAAGGGGTATAATCATTAAAAGCAATCGAGTCTCTGTA
AGAGttttaaaatcacgaaaatgaaaaatcggCTCCCTCAAAGGACCATG
TAAATCTTAGGGAAGCTGTCTCTCTAAGTGTGAGAAAAACGTCAAGAATT
TAGTCTCTCGAAGGTTCTATTTTC

Run BLAST on NCBI

transcript from alignment at sc0000019:507847..512378-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002311 ID=TCONS_00002311|Name=TCONS_00002311|organism=Clytia hemisphaerica|type=transcript|length=4532bp|location=Sequence derived from alignment at sc0000019:507847..512378- (Clytia hemisphaerica)
TTCAAAATATCTATCATCTTTATTTATCGTTTGGAGTGTTGCTAGGCATT
GGTTTAGCCCTTCTTTACACACCGACTTTGGTCATGGTTGGACGATGGTT
TGACAAATACCAAACGCAAGCTACAACTTTTATGATGATTGGAGCTCCAA
TAGGGTCGCTTATATTTAACCCGCTGATGGAGAAAATCATGGAGAATTAT
AACCTAAGGTCTGCGATGAATCTCTATGGTATTATGTTCCTGGGAATAAC
ATTTATNGGGAGCTCCTATAGGGTCGCTTATATTTAATCCGTTGATGGAG
AAAATCATGGAAAATTATAACTTAAGGTCTGTGATGAATCTTTATGGTAT
TATGTTCCTGGGAATAACATTTGTATGCTCTTTTGGTTATCTTCCCTTCA
GCCAAAAGCTTATCAAAAAAGATGTTGATATAGAATCTAANGGGTTGTGC
AACTTTCGACCTTTGGACCATTAGTGGGACTAAAGAGGAGAAAAAATTGG
AAATATTTGTTAATTTTACAACCCTTATTGTACTTTAATGGGACAAATGA
CCAAATTTCGATGTATTGAGGGGCAAAAATTGAAATTTTCCTATTTTTCC
GACTTTAAATTGGACTCAGATTTAATTTTCTGATTTTTCCAGACCTTACA
GAGGCTGCCAGGTCCAAAAAGGTATCCGTAAGGGCGGCACATACCAGTAN
TAGGAACAACGCATTGTGGTTGTTCTGTGCATGCAGATTCTTTGCAATCT
TGTCTTCCTACGTCCCCCTGTTTCACTTGGTAAGTTATAAAGTTCTTTAG
TCTTACCAAAATTTACCATAAAACTTAACTTTGTTTTGGACAGAAGATTG
CATAATATACGATTTGTTGCTCAAATTTGCCCAAATGTGGTAAAACTTTC
TCCCTATCGTTAGAGTTAAATTTTGAAATCCTAAATTTTTGATCCCTTCT
TCCAAGAAATTTGAACACTTTCCTAATAGGTAATAGCTCGAATCAAATAA
GTGACCCGGTGAGAAATTTTTGCAAGTTTGGATAGTTTAGGGGTTAAATA
TAATTGGGTTGTAAATGTATTAGACTAGCAAGCGTCTGTCACAGGAACGC
GGGAATAGTGTTTATCTATAAAGAGTTCTTATAAAAAATAGAAATTGCCG
TGGGAAAGTGGTTTGGAAACACAATTGTATGCAGTGTACATATAGACATA
GAGCCCGTTGCAAGCTTAAGCTGCAGCGAAATACAACGATACAACGATAC
AACAATGGTTTATTAATCTATAAATGTATCAATTTCAGATCAACTACGCA
ATGACGATAGGAATCAGCAGTTCCACAGCAAGTCTAATGTTAGCTGTCTG
GTCTGGAAGTAATTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAA
ATCACCGAGAAAAATTGCTCTCCACCTATCAAATCTCAATGTTTCTAAGC
GGAGTGGTCAGCGCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTT
TCTCTATTGTTGTATTTATGGAATTTTGGATGGCTCGAATATTGGATTAG
CCAGTCTGGTGACGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCT
TGGGGTATACAACAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGT
ACTGATCGGTATGATTAATTTTCGCCCTTTTATTTGCTATTTGAAAACTC
AGTAGGTACTAGGTTTGCGAAAAGATGGGTTGTGCAACTTTCGACCTTTG
GACCATTAGTGGGACTAAAGAGGAGAAAAAATTGGAAATATTTGTTAATT
TTACAACCCTTATTGTACTTTAATGGGACAAATGACCAAATTTCGATGCA
TTGAGGGGCAAAAATTGAAATTTTCCTATTTTTCCGACTTTAAATTGGAC
TCAGATTTAATTTTCTGATTTTTCCAGACCTTACAGAGGCTGCCAGGTCC
AAAAAGGTATCCGTAAGGGCGGCACATACCAGTACCGTTACTCACCAAAT
AAACCCCCTGGGTTTGAAAAAGACTCCCTTTATACACCCCCTATTCCAAA
AAGCGATGGGGCTACTTCCCACAAATTGGCCAAAATATTCTTGCAAGTGG
AAAAGTATACTCAAATTTTTGTCGCCGATTATAATAATAAAAGAAACAAA
TCTTCTTTGCAAAATATAGTGCTTTTTCTAGACTGGAGTCGTTTATAATG
CGTGTAATACTAATAATACCAATACTAACAAGACGACTTGAAGTCGAAAA
TTTCGCCAAATATTTGCAAAAAGTATGCTAAAACGCTGGCTCTGAAACAG
CTGTTAAGAAAATTACGAGGTGGATTAGAAAAAAAAAGGTTTAGGTCGAG
TGAGAAATGAGAAATGATTCGGACACGGTCATTTTTTATAATGNATAGTG
TTTATCTATAAAGAGTTCTTATAAAAAATAGAAATTGCCGTGGGAAAGTG
GTTTGGAAACACAATTGTATGCAGTGTACATATAGACATAGAGCCCGTTG
CAAGCTTAAGCTGCAGCGAAATACAACGATACAACGATACAACAATGGTT
TACTAATCTATAAATGTATCAATTTCAGATCAACTACGCAATGACGATAG
GAATCAGCAGTTCCACAGCAAGTCTTATGTTAGCTGTCTGGTCTGGAAGT
AATTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAAATCACCGAGA
AAAATTGCTCTCAACCTATCAAATCTCAATGTTTCTAAGCGGAGTTGTCA
GCGCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGT
TGTATTTATGGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGT
GACGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATAC
AACAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGGT
ATGATTAATTTTCGCCCTTTTATTTGCTATTTGAAAACTCAGTAGGTACT
AGGTTTGCGAAAAGATAGGGTGTGCAACTTTCGACCTTTGGACCATTAGT
GGGACTAAAGAGGAGAAAAAATTGGAAATATTTGTTAATTTTACTACCCT
TATTGTACTTTAATGGGACAAATGACCAAATTTCGATGTATTGAGGGGCA
AAAATTGAAATTTTCCTATTTTTCCGACTTTTAATTGGACTCAGATTTAA
TTTTCTGATTTTTCCAGACCTTACAGAGGCTGCCAGGTCCAAAAAGGTAT
CCGTAAGGGCGGCACATACCAGTACCGTTACTCGCCAAATAAACCCCNNN
NNNNNNCCGCCGCCGCGAAAGGCTATCGTAATACTTTCGCTAGGCGAAAT
TAATAATAATACGGGATTTAATTGTTCCCTTTATTACTTTTTGCTTTATT
TCTATAATGTATGAATTAGTCGTCTAGCTTGCTAGACTATGCTTTTTCTC
ACTTTTGAGTTTCCGTCCGTTCTTTTTATCGCCACTGGTTAAAAGATCCT
CCCTGATTAGTGACTACTTTTAAACATTCTTAGAATCGAGTGGCAAGTCA
TTCGACAATAATATCTGACACAAAAAAATCTTGCAAAATTTTAGAAAATA
TTTGAGTCTTCAAAATCTTTCCGACCTCTTCATTTTCTAGGTAAATTTTG
TTCTTTTTTGAGAATCTCTACCATTCATTTTCAATGTATTTTTCTCAACA
ACAGGTGCAATGAACGATGCGAAATTATTGAGTGCAAATTACATGTTTGT
TTTTACTGGTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCAC
GGATCACACATAATCGAACCCGTCAATCAGAGATTCCAAACACAGAGCTC
AAGGATGTGTATATTACTAACCAGAACGAGAGCTTGGACGAATCACACTT
ACAAAAGGATGTGTATATTACTGACCAGAAAAATTCTAAAGAGAACGCAA
ATTCTTCGGAATTGCCAAAACAAACCTCAGTCGAAAATTTCTCATTTGAT
AATAAAACTTTCAATGTTGAAATTATCCGGAATGAAAAGGAGTCATTGTC
CTCAGTTGAATTTTCGAAAGATACACAAAATGGGAAAATTGTCTGATGAA
TTTTATTTTAGTAACAAAACATTTGTCTATGCCAATGAAGACTGAAAAGA
GTGACAAGAAATCTACCAAATGATCAAAAGAAAATAAAGAACACAGCATA
GAAGATTTCGATAATGAATATTGATTCGAACACAAAGAATTTTATATTAA
TGTAAAGAATATTCTATATTTGACAGGGCGTAACCGACGGGGGGATACTT
AGGCAAATTGGGCGCCGGGTAAGTGCGAGCCATATGGGTCCTTCTTTCAC
ACGCACGTCGAGATCGTCTCTAAGGGGTATAATCATTAAAAGCAATCGAG
TCTCTGTAAGAGTTTTAAAATCACGAAAATGAAAAATCGGCTCCCTCAAA
GGACCATGTAAATCTTAGGGAAGCTGTCTCTCTAAGTGTGAGAAAAACGT
CAAGAATTTAGTCTCTCGAAGGTTCTATTTTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001224	XLOC_001224	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002311-exon-sc0000019-1575043694:512053..512378	TCONS_00002311-exon-sc0000019-1575043694:512053..512378	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1575043694:509431..509800	TCONS_00002311-exon-sc0000019-1575043694:509431..509800	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1575043694:507847..508674	TCONS_00002311-exon-sc0000019-1575043694:507847..508674	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1510915933:512053..512378	TCONS_00002311-exon-sc0000019-1510915933:512053..512378	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1510915933:509431..509800	TCONS_00002311-exon-sc0000019-1510915933:509431..509800	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1510915933:507847..508674	TCONS_00002311-exon-sc0000019-1510915933:507847..508674	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1491911889:512053..512378	TCONS_00002311-exon-sc0000019-1491911889:512053..512378	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1491911889:509431..509800	TCONS_00002311-exon-sc0000019-1491911889:509431..509800	Clytia hemisphaerica	exon
TCONS_00002311-exon-sc0000019-1491911889:507847..508674	TCONS_00002311-exon-sc0000019-1491911889:507847..508674	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000019	supercontig	sc0000019:507847..512378 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	7.90317	5.93761	3.58789	2.77457	0.267184	0.66185	0.242428	0	0.459201	0.245831	0.0397346	0.0578992	0	0	1.74605	0.815606	0	0.175107	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002311 vs. Swiss-Prot (Human)

BLAST of TCONS_00002311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002311 (transcript) - C. hemisphaerica