TCONS_00002311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002311
Unique NameTCONS_00002311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1524

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002311 ID=TCONS_00002311|Name=TCONS_00002311|organism=Clytia hemisphaerica|type=transcript|length=1524bp
TTCAAAATATCTATCATCTTTATTTATCGTTTGGAGTGTTGCTAGGCATT
GGTTTAGCCCTTCTTTACACACCGACTTTGGTCATGGTTGGACGATGGTT
TGACAAATACCAAACGCAAGCTACAACTTTTATGATGATTGGAGCTCCAA
TAGGGTCGCTTATATTTAACCCGCTGATGGAGAAAATCATGGAGAATTAT
AACCTAAGGTCTGCGATGAATCTCTATGGTATTATGTTCCTGGGAATAAC
ATTTATNGGGAGCTCCTATAGGGTCGCTTATATTTAATCCGTTGATGGAG
AAAATCATGGAAAATTATAACTTAAGATCAACTACGCAATGACGATAGGA
ATCAGCAGTTCCACAGCAAGTCTTATGTTAGCTGTCTGGTCTGGAAGTAA
TTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAAATCACCGAGAAA
AATTGCTCTCAACCTATCAAATCTCAATGTTTCTAAGCGGAGTTGTCAGC
GCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGTTG
TATTTATGGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGTGA
CGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATACAA
CAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGGTGC
AATGAACGATGCGAAATTATTGAGTGCAAATTACATGTTTGTTTTTACTG
GTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGGATCACA
CATAATCGAACCCGTCAATCAGAGATTCCAAACACAGAGCTCAAGGATGT
GTATATTACTAACCAGAACGAGAGCTTGGACGAATCACACTTACAAAAGG
ATGTGTATATTACTGACCAGAAAAATTCTAAAGAGAACGCAAATTCTTCG
GAATTGCCAAAACAAACCTCAGTCGAAAATTTCTCATTTGATAATAAAAC
TTTCAATGTTGAAATTATCCGGAATGAAAAGGAGTCATTGTCCTCAGTTG
AATTTTCGAAAGATACACAAAATGGGAAAATTGTCTgatgaattttattt
tagtaaCAAAACATTTGTCTATGCCAATGAAGACTGAAAAGAGTGACAAG
AAATCTACcaaatgatcaaaagaaaataaagaacacAGCATAGAAGATTT
CGATAATGAATATTGATTCGAACACAAAGAATTTTATATTAATGTAAAGA
ATATTCTATATTTGACAGGGCGTAACCGAcggggggatacttaggcaaat
TGGGCGCCGGGTAAGTGCGAGCCATATGGGTCCTTCTTTCACACGCACGT
CGAGATCGTCTCTAAGGGGTATAATCATTAAAAGCAATCGAGTCTCTGTA
AGAGttttaaaatcacgaaaatgaaaaatcggCTCCCTCAAAGGACCATG
TAAATCTTAGGGAAGCTGTCTCTCTAAGTGTGAGAAAAACGTCAAGAATT
TAGTCTCTCGAAGGTTCTATTTTC
Run BLAST on NCBI

transcript from alignment at sc0000019:507847..512378-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002311 ID=TCONS_00002311|Name=TCONS_00002311|organism=Clytia hemisphaerica|type=transcript|length=4532bp|location=Sequence derived from alignment at sc0000019:507847..512378- (Clytia hemisphaerica)
TTCAAAATATCTATCATCTTTATTTATCGTTTGGAGTGTTGCTAGGCATT GGTTTAGCCCTTCTTTACACACCGACTTTGGTCATGGTTGGACGATGGTT TGACAAATACCAAACGCAAGCTACAACTTTTATGATGATTGGAGCTCCAA TAGGGTCGCTTATATTTAACCCGCTGATGGAGAAAATCATGGAGAATTAT AACCTAAGGTCTGCGATGAATCTCTATGGTATTATGTTCCTGGGAATAAC ATTTATNGGGAGCTCCTATAGGGTCGCTTATATTTAATCCGTTGATGGAG AAAATCATGGAAAATTATAACTTAAGGTCTGTGATGAATCTTTATGGTAT TATGTTCCTGGGAATAACATTTGTATGCTCTTTTGGTTATCTTCCCTTCA GCCAAAAGCTTATCAAAAAAGATGTTGATATAGAATCTAANGGGTTGTGC AACTTTCGACCTTTGGACCATTAGTGGGACTAAAGAGGAGAAAAAATTGG AAATATTTGTTAATTTTACAACCCTTATTGTACTTTAATGGGACAAATGA CCAAATTTCGATGTATTGAGGGGCAAAAATTGAAATTTTCCTATTTTTCC GACTTTAAATTGGACTCAGATTTAATTTTCTGATTTTTCCAGACCTTACA GAGGCTGCCAGGTCCAAAAAGGTATCCGTAAGGGCGGCACATACCAGTAN TAGGAACAACGCATTGTGGTTGTTCTGTGCATGCAGATTCTTTGCAATCT TGTCTTCCTACGTCCCCCTGTTTCACTTGGTAAGTTATAAAGTTCTTTAG TCTTACCAAAATTTACCATAAAACTTAACTTTGTTTTGGACAGAAGATTG CATAATATACGATTTGTTGCTCAAATTTGCCCAAATGTGGTAAAACTTTC TCCCTATCGTTAGAGTTAAATTTTGAAATCCTAAATTTTTGATCCCTTCT TCCAAGAAATTTGAACACTTTCCTAATAGGTAATAGCTCGAATCAAATAA GTGACCCGGTGAGAAATTTTTGCAAGTTTGGATAGTTTAGGGGTTAAATA TAATTGGGTTGTAAATGTATTAGACTAGCAAGCGTCTGTCACAGGAACGC GGGAATAGTGTTTATCTATAAAGAGTTCTTATAAAAAATAGAAATTGCCG TGGGAAAGTGGTTTGGAAACACAATTGTATGCAGTGTACATATAGACATA GAGCCCGTTGCAAGCTTAAGCTGCAGCGAAATACAACGATACAACGATAC AACAATGGTTTATTAATCTATAAATGTATCAATTTCAGATCAACTACGCA ATGACGATAGGAATCAGCAGTTCCACAGCAAGTCTAATGTTAGCTGTCTG GTCTGGAAGTAATTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAA ATCACCGAGAAAAATTGCTCTCCACCTATCAAATCTCAATGTTTCTAAGC GGAGTGGTCAGCGCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTT TCTCTATTGTTGTATTTATGGAATTTTGGATGGCTCGAATATTGGATTAG CCAGTCTGGTGACGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCT TGGGGTATACAACAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGT ACTGATCGGTATGATTAATTTTCGCCCTTTTATTTGCTATTTGAAAACTC AGTAGGTACTAGGTTTGCGAAAAGATGGGTTGTGCAACTTTCGACCTTTG GACCATTAGTGGGACTAAAGAGGAGAAAAAATTGGAAATATTTGTTAATT TTACAACCCTTATTGTACTTTAATGGGACAAATGACCAAATTTCGATGCA TTGAGGGGCAAAAATTGAAATTTTCCTATTTTTCCGACTTTAAATTGGAC TCAGATTTAATTTTCTGATTTTTCCAGACCTTACAGAGGCTGCCAGGTCC AAAAAGGTATCCGTAAGGGCGGCACATACCAGTACCGTTACTCACCAAAT AAACCCCCTGGGTTTGAAAAAGACTCCCTTTATACACCCCCTATTCCAAA AAGCGATGGGGCTACTTCCCACAAATTGGCCAAAATATTCTTGCAAGTGG AAAAGTATACTCAAATTTTTGTCGCCGATTATAATAATAAAAGAAACAAA TCTTCTTTGCAAAATATAGTGCTTTTTCTAGACTGGAGTCGTTTATAATG CGTGTAATACTAATAATACCAATACTAACAAGACGACTTGAAGTCGAAAA TTTCGCCAAATATTTGCAAAAAGTATGCTAAAACGCTGGCTCTGAAACAG CTGTTAAGAAAATTACGAGGTGGATTAGAAAAAAAAAGGTTTAGGTCGAG TGAGAAATGAGAAATGATTCGGACACGGTCATTTTTTATAATGNATAGTG TTTATCTATAAAGAGTTCTTATAAAAAATAGAAATTGCCGTGGGAAAGTG GTTTGGAAACACAATTGTATGCAGTGTACATATAGACATAGAGCCCGTTG CAAGCTTAAGCTGCAGCGAAATACAACGATACAACGATACAACAATGGTT TACTAATCTATAAATGTATCAATTTCAGATCAACTACGCAATGACGATAG GAATCAGCAGTTCCACAGCAAGTCTTATGTTAGCTGTCTGGTCTGGAAGT AATTTTTTAGGTCGAATCTGTTATGGCTGCTTTATTGCAAATCACCGAGA AAAATTGCTCTCAACCTATCAAATCTCAATGTTTCTAAGCGGAGTTGTCA GCGCTGCAGCTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGT TGTATTTATGGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGT GACGATTGATTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATAC AACAAACGATCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGGT ATGATTAATTTTCGCCCTTTTATTTGCTATTTGAAAACTCAGTAGGTACT AGGTTTGCGAAAAGATAGGGTGTGCAACTTTCGACCTTTGGACCATTAGT GGGACTAAAGAGGAGAAAAAATTGGAAATATTTGTTAATTTTACTACCCT TATTGTACTTTAATGGGACAAATGACCAAATTTCGATGTATTGAGGGGCA AAAATTGAAATTTTCCTATTTTTCCGACTTTTAATTGGACTCAGATTTAA TTTTCTGATTTTTCCAGACCTTACAGAGGCTGCCAGGTCCAAAAAGGTAT CCGTAAGGGCGGCACATACCAGTACCGTTACTCGCCAAATAAACCCCNNN NNNNNNCCGCCGCCGCGAAAGGCTATCGTAATACTTTCGCTAGGCGAAAT TAATAATAATACGGGATTTAATTGTTCCCTTTATTACTTTTTGCTTTATT TCTATAATGTATGAATTAGTCGTCTAGCTTGCTAGACTATGCTTTTTCTC ACTTTTGAGTTTCCGTCCGTTCTTTTTATCGCCACTGGTTAAAAGATCCT CCCTGATTAGTGACTACTTTTAAACATTCTTAGAATCGAGTGGCAAGTCA TTCGACAATAATATCTGACACAAAAAAATCTTGCAAAATTTTAGAAAATA TTTGAGTCTTCAAAATCTTTCCGACCTCTTCATTTTCTAGGTAAATTTTG TTCTTTTTTGAGAATCTCTACCATTCATTTTCAATGTATTTTTCTCAACA ACAGGTGCAATGAACGATGCGAAATTATTGAGTGCAAATTACATGTTTGT TTTTACTGGTGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCAC GGATCACACATAATCGAACCCGTCAATCAGAGATTCCAAACACAGAGCTC AAGGATGTGTATATTACTAACCAGAACGAGAGCTTGGACGAATCACACTT ACAAAAGGATGTGTATATTACTGACCAGAAAAATTCTAAAGAGAACGCAA ATTCTTCGGAATTGCCAAAACAAACCTCAGTCGAAAATTTCTCATTTGAT AATAAAACTTTCAATGTTGAAATTATCCGGAATGAAAAGGAGTCATTGTC CTCAGTTGAATTTTCGAAAGATACACAAAATGGGAAAATTGTCTGATGAA TTTTATTTTAGTAACAAAACATTTGTCTATGCCAATGAAGACTGAAAAGA GTGACAAGAAATCTACCAAATGATCAAAAGAAAATAAAGAACACAGCATA GAAGATTTCGATAATGAATATTGATTCGAACACAAAGAATTTTATATTAA TGTAAAGAATATTCTATATTTGACAGGGCGTAACCGACGGGGGGATACTT AGGCAAATTGGGCGCCGGGTAAGTGCGAGCCATATGGGTCCTTCTTTCAC ACGCACGTCGAGATCGTCTCTAAGGGGTATAATCATTAAAAGCAATCGAG TCTCTGTAAGAGTTTTAAAATCACGAAAATGAAAAATCGGCTCCCTCAAA GGACCATGTAAATCTTAGGGAAGCTGTCTCTCTAAGTGTGAGAAAAACGT CAAGAATTTAGTCTCTCGAAGGTTCTATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001224XLOC_001224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002311-exon-sc0000019-1575043694:512053..512378TCONS_00002311-exon-sc0000019-1575043694:512053..512378Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1575043694:509431..509800TCONS_00002311-exon-sc0000019-1575043694:509431..509800Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1575043694:507847..508674TCONS_00002311-exon-sc0000019-1575043694:507847..508674Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1510915933:512053..512378TCONS_00002311-exon-sc0000019-1510915933:512053..512378Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1510915933:509431..509800TCONS_00002311-exon-sc0000019-1510915933:509431..509800Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1510915933:507847..508674TCONS_00002311-exon-sc0000019-1510915933:507847..508674Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1491911889:512053..512378TCONS_00002311-exon-sc0000019-1491911889:512053..512378Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1491911889:509431..509800TCONS_00002311-exon-sc0000019-1491911889:509431..509800Clytia hemisphaericaexon
TCONS_00002311-exon-sc0000019-1491911889:507847..508674TCONS_00002311-exon-sc0000019-1491911889:507847..508674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:507847..512378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 7.90317 5.93761 3.58789 2.77457 0.267184 0.66185 0.242428 0 0.459201 0.245831 0.0397346 0.0578992 0 0 1.74605 0.815606 0 0.175107 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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