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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002309 ID=TCONS_00002309|Name=TCONS_00002309|organism=Clytia hemisphaerica|type=transcript|length=526bp
CTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGTTGTATTTAT
GGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGTGACGATTGA
TTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATACAACAAACGA
TCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGgTGCAATGAAC
GATGCGAAATTATTGAGTGCGAATTACATGTTTACTTTTACTGGTGGTAC
ATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGGATCACACACAATC
GAACCCgtcaatcagtgattccaaaCACAGAGCTCAAGGATGTGTATAAT
ACTGACCAGAACGAGAGCTTGGACAAATCACACTTACAAAAGGATGTGTA
TATTACTGACCAGAACGAGAGCTTGGACGAATCACACTTACAAAAGGATG
TGTATATTACTGACCAGAACGAGAGTTTGGACGAAAGAAGCTTGCAAAAA
GAAGTGCTTGAATTAGATTCTCAAGA Run BLAST on NCBI transcript from alignment at sc0000019:501465..509619- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002309 ID=TCONS_00002309|Name=TCONS_00002309|organism=Clytia hemisphaerica|type=transcript|length=8155bp|location=Sequence derived from alignment at sc0000019:501465..509619- (Clytia hemisphaerica)
CTTATTTTGCCGACAATACATGGAGTTTGTTTCTCTATTGTTGTATTTAT
GGAATTTTGGATGGCTCGAATATTGGATTAGCCAGTCTGGTGACGATTGA
TTTGACAAGTCCACTTGATTTGGGAGCAGCTTGGGGTATACAACAAACGA
TCAATGGAATTCCAAGCATTGCTGGTCCTGTACTGATCGGTATGATTAAT
TTTCGCCCTTTTATTTGCTATTTGAAAACTCAGTAGGTACTAGGTTTGCG
AAAAGATAGGGTGTGCAACTTTCGACCTTTGGACCATTAGTGGGACTAAA
GAGGAGAAAAAATTGGAAATATTTGTTAATTTTACTACCCTTATTGTACT
TTAATGGGACAAATGACCAAATTTCGATGTATTGAGGGGCAAAAATTGAA
ATTTTCCTATTTTTCCGACTTTTAATTGGACTCAGATTTAATTTTCTGAT
TTTTCCAGACCTTACAGAGGCTGCCAGGTCCAAAAAGGTATCCGTAAGGG
CGGCACATACCAGTACCGTTACTCGCCAAATAAACCCCNNNNNNNNNCCG
CCGCCGCGAAAGGCTATCGTAATACTTTCGCTAGGCGAAATTAATAATAA
TACGGGATTTAATTGTTCCCTTTATTACTTTTTGCTTTATTTCTATAATG
TATGAATTAGTCGTCTAGCTTGCTAGACTATGCTTTTTCTCACTTTTGAG
TTTCCGTCCGTTCTTTTTATCGCCACTGGTTAAAAGATCCTCCCTGATTA
GTGACTACTTTTAAACATTCTTAGAATCGAGTGGCAAGTCATTCGACAAT
AATATCTGACACAAAAAAATCTTGCAAAATTTTAGAAAATATTTGAGTCT
TCAAAATCTTTCCGACCTCTTCATTTTCTAGGTAAATTTTGTTCTTTTTT
GAGAATCTCTACCATTCATTTTCAATGTATTTTTCTCAACAACAGGTGCA
ATGAACGATGCGAAATTATTGAGTGCAAATTACATGTTTGTTTTTACTGG
TGGTACATTCATCCTTGGAAGTATTTTCATGAACTTTGCACGGATCACAC
ATAATCGAACCCGTCAATCAGAGATTCCAAACACAGAGCTCAAGGATGTG
TATATTACTAACCAGAACGAGAGCTTGGACGAATCACACTTACAAAAGGA
TGTGTATATTACTGACCAGAAAAATTCTAAAGAGAACGCAAATTCTTCGG
AATTGCCAAAACAAACCTCAGTCGAAAATTTCTCATTTGATAATAAAACT
TTCAATGTTGAAATTATCCGGAATGAAAAGGAGTCATTGTCCTCAGTTGA
ATTTTCGAAAGATACACAAAATGGGAAAATTGTCTGATGAATTTTATTTT
AGTAACAAAACATTTGTCTATGCCAATGAAGACTGAAAAGAGTGACAAGA
AATCTACCAAATGATCAAAAGAAAATAAAGAACACAGCATAGAAGATTTC
GATAATGAATATTGATTCGAACACAAAGAATTTTATATTAATGTAAAGAA
TATTCTATATTTGACAGGGCGTAACCGACGGGGGGATACTTAGGCAAATT
GGGCGCCGGGTAAGTGCGAGCCATATGGGTCCTTCTTTCACACGCACGTC
GAGATCGTCTCTAAGGGGTATAATCATTAAAAGCAATCGAGTCTCTGTAA
GAGTTTTAAAATCACGAAAATGAAAAATCGGCTCCCTCAAAGGACCATGT
AAATCTTAGGGAAGCTGTCTCTCTAAGTGTGAGAAAAACGTCAAGAATTT
AGTCTCTCGAAGGTTCTATTTTCGTACTTTGGCTCGGCCATACCTGTCAT
CTCGCAAACCTAGTACACCCCCTGCATAACCAGTAGTAAATCCTTGTCAG
ACACCCCACCCGGAAAAGTTTGACCAAAATATCGTCCCCACTGGTAAAAT
TTCTCACTGAAAAATTGACTTTTATTTTATTCTCATTGAGATTTCGTAAG
AAATTTATATTCCCATTGGGGCTGAGAACAGGGATGTCAGCAGATACGAT
AATACAGTATTATAATATTATAGAGAATTTGTACAATTTTTACATACCAG
TGAGATTGTATTCTAAGGCGTCAAAAATATAAGAATCTTTAACTTCAAAC
GAGAGTGTACTTTAATTGAAAGGTCGAGACCATAGTTTTTAAAATGATAA
TTAGTCGACGGAAGGTTAGACAAACAATGAACGAGGTATTATGACCCCCC
CCCCCCCAGTGGACCCAAAATTCATGCCATCACGCCAATTTCTTTCGAGT
TCACGCCATCATGCCTGAAAAATTTGATTTTCACGATCACTCCAATTTTT
TTCTATTTCACGCCATTACGCTCATATTCGACGCAATCATGGTTTGCGCG
GACGGGAGAAGTTTTTTTTCAAAATTTCACACCATCACGCCAACCGTTGG
GGGCCTCTATTATCGATAATTCGATGTAATTAAGCTAATTTATTGCTCAT
TGTGATAATGTCTGGTTGTTGTTTATCTACTTGCCATAAGATAACTTATG
CCATGAAGAAATGGAGTCTCATTTGCTCGTTAATCGGGAGTTGCTCAGCT
ATCGTGGTTAGCCATTTTGGGCGGACATTTGAAGGTGGACGACCTTCGAG
GGTGGACATTCGAGGATGACCTTGAAAGACTTTCTGAAAGGCTTTGAATG
AAATTTGATATTTTAAAAAGAAAAAAAGAATGAGTAATCAAATTTCAAAG
CGCTCTTGAAAATGTTTAAATAAGAAGATTAGAAAAGGTAAAAAAATACA
CATTTTCACAGTTTTCATTTTGAGGCTGAAAATTGACCAATTGAAAGATC
AGTACAGATAAAAGGCGCCAGAAATAATTCTTAGGTGCTTAAAAATCGCT
AGCGAAAAGCTTCATGCCAGAATGAGAGAGTTCCGATTTAAATGTATTAT
ATAATATAGATGTATTGAAAAATTATTGAAAAACCGTGTCAACAATCCTG
GCCATAATATTTGAGACAAAAGGGAAATTCCCACGAAATCTTATAACCAC
AAGTATTTTGGAAGCGCTCTAAATTAGTTTAGACGAATAGAGTTTTAACT
TTGAGTTTTAACATTAGACTTAAGTCTTAGGACCTTAGAATCTGAGGATC
CAAAAGTCCCAGAATGGTCAAACAGGGCTCAGAATATAGCCTGGAAGTCA
ATTAACCCCACCCAAATCGAAATACTCGAATAAATTTATCAATCAGCCCA
AAAACGACTTTCTCGCCCGAATTCCAAATTTTGAAAAACGAGGAAATAAG
CTAAATTCTCAATATATTTTGGCCCGGATTGAAGGTTAACCCAAGTTTCT
TGGTTTACTCATAAAATATTAATGATATCCCAGCTGGCACACAACGTTGT
TTCAACGTTAATCTAACGTTAAATGGACGTTGTGAGACCTATAGTAGTTA
TCGTTTGATATACCGCATCACAGTCGTGTCTAGCTGTCCTTACACGTTTT
GCTTGACTATCGGTTACACCCGACTGAATTTAGCATGAGAATCTCTGCTA
CCGGAGAAACCTTACAGAAAAATGAAAAATGGTAACCCATTGGTTCCAGA
TGTTAAAATTTTCCCGACCTTCAGAGCTTTAGCGTGTCGGAAGAAAATTT
CTACATCGAGTACCAGATAAACGTTTATGACATATTCATTATCTTTTGAT
AAAACAAAGGCAATAATTACAGTGTCGTGTAAAAACCGCTCTCATCCATA
AATTTTGCAGGGTATCTCACTATAAGCATGAAGTTAATAAAGATATAGAT
GGAGAGTCAATGCCTTTTGTTCTATTCTGATTTTAAATTCTGATTTATCA
TCGGAAGCAAACAGCTGTTTGGTTGCTTTGGGAATAAGTGGGGAATAAGT
TGATTAATTTTGGGTATACTCGTAGGAATATTTAAGATGAATGAAAAGAC
ATTACATTTTTAACTAGCCCGGGGTCCTCTTAAAGCTTTTTTTATAGACT
GGATGGCGCAATTAAGTGGCCCGGTAGTATGTGGCAATATGCTTTTGCCT
AGGCGGACTGTAAAACAGTCCGCCAGATTTTAGTTGTTTTTGGAAGGTAA
AAACAGTATGTAGCAATGTTTTTATACGAGAATAAGGGATTGCAAATCTG
TTATTGATGTTTGTTTCTCATTTTTGATTATATCTTTCAACTTCAAGTAG
TTTTATTGTTATTTGGATTTTTAACATTTTTTTTCAAAATGGCGACCTCG
CCAAATGCTCCTAGTCTACTTCACTGGACTCAGCGTCATAAAAAATTATC
AAAAAGCAAAGTTCAGCCAAAAGTAGACTCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAACCT
TGTATCGATCATTTTGTCAGAGTATGAAAACCGCTGCCCACTTAGACGTG
AAGATTTTAAGATAAGAAACTTTCAATGATAAAGTGATGCAACTCTCAAT
GTTAACAAAATGCCAGCCAAAAAATGTGTCCTTATGAAATTAATTATACT
CTTTTAGTCCTACATCAGTTGAAACTATTTCGAATCGCATTTTAACAAGG
ATTTTCGGCAAAATTAAGTTTTTCAAAATCAACCAAACAGTCTGTTTCTG
TTCTTACAAAGTTATAAATTGATGTTTTTTTTGCTTCCAATGATGGTACA
TCAAAGAAAAGCCGCTTTGAATAGATTTATAAAAGATTTCAACGACCATT
TAGATCATTACCGAGACGTTTTCTCTCCATCTATATCTTTATTACCTTCA
TGGTATTACACAGATAAAGATGCTGGATTGAATTTACAGCTATACTTTAG
ATAACGTGCCATGTAAAAACAAAGAAGGTGCTAGATTTAATCTGCCATCA
TCTTAAATACACTGCAAATCTTACGGCTTAACTCTTTCTTACCTGGAAAA
GTTTGAAGATTCGTCACTAACCTTGGGCTTTATCTCGTTAGTGTAAACAA
AACTATACCTTGGCAAGACCTTGGTAAATTATTTGGAATGTTTCGAGTCA
TAAAATACGTTTTTTTTTCTATGATATCGTCTGTGATATGTTCAGCCCTG
CTTAGTAGCACATCGCAATATTCTTTACTTTCTTTTTCTCAAGTAGCTTG
GGTTGGTTCAATGGCTAGTGGTTTATTGGTATTACTTGCACTGCCTGCTT
CCTTATTATGCAATTATCTTGGCGTCTTCATAACATCCATTTTGGGTTCC
ATAATGTGTGGATCTGGCATAATACTGTCAGCGCATCTTCAAAACATCTA
CCATCTTTATTTATCGTTTGGAGTATTGCTAGGGGTTGGTTCTGCACTTC
TTTATACACCAACGGTTGTTATGGTTGGACGATGGTTCGATAAATACCAA
GCTTTAGTTACAACCTTGGTTATTGCCGGAGCTCCTGTAGGATCCCTAAT
ATTTAACCCACTAATGGAGAAAATGATGGAGGATTACCCTTTGCGATTAG
TTATGAGGATTTATGGGATTGCTTATCTAATCATATCATTCGTTTGTTCT
TTCGGATACCTACCGTTTACCCAAAGACTTATTCGAAAAGAAAATCAAGA
GTCCGCCACTGGCACCACTAACAAAGTTGATATTGGATTCAAGTTTCGTA
AAAAGCTTTTGAAGAATATAGCTTTCTGGCTATTCACCGTTTGCCGATTC
TTTGCAATCTTCGCTTTCTATGTTCCACTGTTCCATTTGGTAATTATGTT
TTATTTTTAAGGAATAGCATTTAGCAGAACTGACCTTAGACAAAAACACG
GTGGAACCCCTGCCCTCCCAATATTTTGTTTTGTTGTAAAAATACTTTAT
TATTCCATCCCCATTTGAAGTTCAATGTATATAATTGCACTCTGTAAGCA
CACCCGTTTGGCTTTTTGATTGCAACAATAGGATTTCTATCCAAATACAC
CTTTTCAACCGTAGTAGCGCGGGCATTTTTTGTCCACGTTATCCCACTAA
AACCGTCCCAGTCCTTTTTTCGCATCTATAGACAATAGAAAAATGCGTCG
AAAAAGGATTGGGACGGTTTTAGTAGGATAAAGCGGACAAAAAAATGCTC
GCGCGACTACGGTTGAAGAGGTGTATTTCCATAGAAATGTTTATCTCCGC
TTTGGGAAAAGTTCAAACGGGGCTATGAGACAAGAGTGTGTGAAAAACTG
GTGCCTTCCCTCCCTTTAGGTAAAAGGTTAAGGGAAATAGACCCGGGTTG
TCCTCGATTAAGGTTGTAAACATGCTACCTACATAAACATTTCAATGGGC
TTTTCCAGAAATAGTCCGTGTCCACCCTGTTGAGGATATCGGATATCCAA
GGGGTTAACGGTTTTTGCTCAAAAGTTTATATTCAGGGGGTTAAATATCT
ACAAGGCAGCGGATATCCAGGGGGTAAAGTGTCTTTTCAAGTAAAAAACA
CGATATCCAGGAGTAAGTATCTATATATATCCAAGGGACTGATCATATTT
TTAAGAGTGGATATGTCTTTAATAAAAAAGTAGGATATCCAGGGGGTTCG
ATACTTCGAAAAATCAATATCCTCAACAGTGGGGGGTGAAATTCTTTTCT
GGAAAAACCCAATAATGCATTTCGTTTCGAAAAGGACTTTTCTGGTTGTC
CTTGACTACGTTTGCAAACATGCTACCTGCATGAAAATTCATTAATGCAT
TTCGTTTCAGATCAAGTATGCAACAAAGATTGGTATCAGTAGCTCAACAG
CCAGTCTCATGATGATGGTATGGTCTGCCTGTAATATTTGTGGCCGTCTA
TCCTTTGGTGCTTTTATAGCCCGTAATCGTAGCAAAGTCCTTATAACATT
TCAAACAGCAATGTTCCTGTGCGGAGTGGTCAGCGCTGCAGCTTATTTTG
CCGACAATACATGGAGTTTGTTTCTCTATTGTTGTGTCTATGGAATGTTG
GATGGATCGAATATTGGTTTAGCCAGTCTGGTGACAATTGATTTGACAAG
TCCACTCGATTTGGGTGCAGCTTGGGGTATACAACAAACGATCAATGGGG
TTCCAACCATTGCTGGTCCTGTGTTGATTGGTAAATATTTTATAGCCAGT
TCTAGCAAAACAAAAGCCTTAAACAGTAATACGTACTAGCTTGTTGTTGC
TAGACAAGATTCTGTCCAAAAAAGAAAAGCAAAACTATTTTTATGACAAG
CAAGTCTTGTTATTTAATGTTAATGCTGAACTTCTACAAACATTGTATTG
TGTGCACTGTGTACTGTGGACGGGGTTTGCGATTTCCGAAATATTGAATA
ATTTTGCCAAAATTTCCGAAATTCCGTAAAAAAATACTTGTGATTCCGCT
ACCGATTTTTGGGGTATTTTTCTCGTTTTGACAAATTTTTCATCAAATTT
GATTTTTCATGTACGAATTCCGAAAAAGGGGGATAAAAACTTTATAATAC
CGAAATTTCGAAACAAAAATTCATGGATTTCCGATACCAAAACAATTTCA
GATTTCCGAAATACCGAAGGAATTTTGCCCGATTACCGAAATTCCGAAGA
AAAAAGGGTCGATTTCCGCAATTCCGAAATACTGTACGCCCCCACTACTG
TTAAAAGTTCTATAACATGCAAGGTCTTTTCCTCGAACATTGTTTTTATA
TTTATTTTCACTTTTTAGGTGCAATGAACGATGCGAAATTATTGAGTGCG
AATTACATGTTTACTTTTACTGGTGGTACATTCATCCTTGGAAGTATTTT
CATGAACTTTGCACGGATCACACACAATCGAACCCGTCAATCAGTGATTC
CAAACACAGAGCTCAAGGATGTGTATAATACTGACCAGAACGAGAGCTTG
GACAAATCACACTTACAAAAGGATGTGTATATTACTGACCAGAACGAGAG
CTTGGACGAATCACACTTACAAAAGGATGTGTATATTACTGACCAGAACG
AGAGTTTGGACGAAAGAAGCTTGCAAAAAGAAGTGCTTGAATTAGATTCT
CAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002309-exon-sc0000019-1575043694:509431..509619 | TCONS_00002309-exon-sc0000019-1575043694:509431..509619 | Clytia hemisphaerica | exon |
| TCONS_00002309-exon-sc0000019-1575043694:501465..501801 | TCONS_00002309-exon-sc0000019-1575043694:501465..501801 | Clytia hemisphaerica | exon |
| TCONS_00002309-exon-sc0000019-1510915933:509431..509619 | TCONS_00002309-exon-sc0000019-1510915933:509431..509619 | Clytia hemisphaerica | exon |
| TCONS_00002309-exon-sc0000019-1510915933:501465..501801 | TCONS_00002309-exon-sc0000019-1510915933:501465..501801 | Clytia hemisphaerica | exon |
| TCONS_00002309-exon-sc0000019-1491911889:509431..509619 | TCONS_00002309-exon-sc0000019-1491911889:509431..509619 | Clytia hemisphaerica | exon |
| TCONS_00002309-exon-sc0000019-1491911889:501465..501801 | TCONS_00002309-exon-sc0000019-1491911889:501465..501801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:501465..509619 - |
Blast
The following BLAST results are available for this feature:
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