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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002307 ID=TCONS_00002307|Name=TCONS_00002307|organism=Clytia hemisphaerica|type=transcript|length=4159bp
CATCGGGTGGGCGATAGGACGCATCCCCAGTTTGATAACGGAATCCACAA
GACCAGGGTGCACTGTCCTCTATAAGGTGCGAACGCTGTTAAGCAAGATG
TAGGAGTGTGTGTGATGAGAGGAGTGTTGAGAGTTGACGTAGAAAGTTAG
AAATATCAGAGTGACGCTGTAGTCGTGTAACGACTGTCACTCTTCTCGCG
TTTTTGTTTCGAGCTTGGGCTGCCTCGAATCTTTTTCATGAATGGGAAGA
AATTAAGGACCAGTTGCCTAGGCCCACACGATGTGGATGAGAATTAGCTA
GTGCCGGAGTCCCAGCGCGCGGTGAGCCGCCAGTGGTTGATTTTCATTTG
CCTTTGTGTTCGATAGAGATATTATGCGAAATTGATGTATTGAAACATCT
TTCAGAGTTTACGGTTTTATTGAGATATAATTTGAGGATATTGAGATCCT
GTAGTAACTGATGTATTGAGACATCTAGAGTAAATGATTTCACGNNNNNN
NNNNNNNNNNNNNNNNNNNNATTGTTTGATAAACGAAAATTGAAGCCGCT
AGACTACAGGTGTTTGTAAACGAACAGAACAAACACCTGTTTAAACAAAA
ACGAACGATATTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTG
CTGATCTAATCGCGTGGGTTGCGAAATTCGATAGGAATTCGCTCATGCAG
TGGCAAATTTTGAGTGTCGTGAGATgcaagaaaaatcaagtgatttgttt
tatttcttttcgTTTGTTTCCATTCTTTTGAATAGTGTTTACCATTTGCG
CTAAGCAATTTGTCATCTATAAGGTACATCTTCGTAAGACTTCGAGTGAT
TTTAAAATAAGAAAGATATCTTTGATCTAAACTCACATTAAAGAAATAAA
ACAGAGACAGTGTCGGCACTCGATGTCATACGAAGATCATTTTAGTCCCC
TAGTGTTTGAGGGAAATCGCCCAATGCCAGGATTAAGATCTAGACCGGAG
ATGTTGAGTCCAGACGGTAGTAACCCAATAGATTCCACCAAACCCAATCC
CGGGATAGCGATGAGATAGTTCAGACACTTTCAAAAGCCCTTAAATACGT
AACGAAGTCTAAGAAACCGTCTGCACCCAGGGTTGTCGAAGATCCAAGAG
ATCCGAatgaagggggaagaacctgTTGGTGATTTCACCAGCCGGTTCTA
CAAATTCTTTAGGAGGGGGAAAGCTACAAATGGGGAAAGTCTATTGATGT
ATTTGTACATCTCGGGCTTAACGTTAAAAACTCCAAGAAATGGTGGTCTC
AGGCGGACCTGATTATAAAGTCCATTGGGGTAGGAAACTAAATGGGAAGT
GTTATCAGCACTTCCCAGTGACCACTAAAAGAAACATGACTCTCTTTCTA
AGGGTAGAAGATAGGAACCTGCTAGCGCGATCTAGGTCCATTAATTGTAC
TAAGCGAAAAAAACATACCGTGCTCATAACAAAAGATAATAAGGCGTACC
ATATTGACAAACGCGGCCGTATTGACCTCTTAGGTAGCAATATACGAGAC
AGGGTTCTCTTCCCACACTTGGTACGACCTCCTAGGGGCTTCAATacaaa
aatattccttaaaaaTCCTGTCATCATGGACCAACCAAGTTTGCTACAAA
TGGTAGCCGAATCAGAACGCACGTTAGAAGAACTAATTAAGATACAGGGT
AGCCCGAGTGGGTCAGGATCTATTGTCGAGGGTATTGGCATGGGATTAGC
TTCAGTCTTGGAAGCTGCAGGGTCAACAGGGGATAAGGTTATTTCAAGTT
TAGGCCGCGCTATCAAGGATACCATTAGTGGCGTCGCGGGTGGTGGTGAA
AAAATTATTACAGCCATTGGGGAATCCGGGGGTAAACTCATAACGTCGAC
AGGTACAGCGGTTAAAGATAGTCTAACGGGAGTCTCTTTTgtattcaaag
aaatatttggTGGAATACCCGGAATGATTATTTGGGTTATACTGCTTCCG
TTAGGGGTGTATGTCGTTTACCTTAGAATAACGGGACAGATCGGTGGCTG
TAGAACATGTAGGAACTGTCTGGGTACGGCTGGCTCGGAAACCTCATTAC
AAAGTAACGAACCCCCTGCCCGAGAAACAGAAGTATACGATGTACCACGT
ACATTAGAAGAGCGCATGGCACGGCCCTTCCCAGAGTATGCCTCGGTCAC
CCTTAGACCTGTACCCGAGCCGCCGGCACCCAGGCAGAGCGAAGTAGAGC
GAGTAAGGCGACGAAGACAGTTAAATCGCCAACGGCTTAATAAAGCCATA
AATCTATTGGATGAAAGGACATTTTACGCAGAAACACAGTAATGTGtacg
ttttttattttatattctatgttttttttgtttttgttttgtttattgtg
GTTTGTTTAATGGTTAAACAGCTTATAAATACGAACGAGTTGAAGCAGTT
TAACTGGTGTGTATATAGATGCGAATAGGTTGAAACGGGTTAACGGATGA
GCATTGTTGATTTTGTCTAGTGACTACTGGCGAACAGTACACGGTCCAGT
AGTTAAACGGTGTTTGACACCTGCTGttcatgaaaaaattaattttaatc
cGTTTGTAATAATCGCATAGTTGACTTCTTTTCTTACAGTTTCCTCAATA
CGCTTtcagaaaagaagaaaagaagttCTAGGtaagtatatatatatatt
ttttttcatttgctttcGAGAGATAATGGTGTTTTTCCGTCCGCACCCAA
TTTTCGGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCACCTACTGGGA
AACCACACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTTCCGTTTAAT
GTCGCTTCTTGTGATGCAGGCACCAGACGACATTACCGAGTCTGAGGAGG
ACCATACGGCGAACATCATCGGATCCTTGACTTGGGAAGCAAACTTCCTA
GAGTCAAGGATCATGATGTACGAAGAACTCCTCCTTCCCCTACTTGCCCA
GATGTGCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGTTCAGGATCT
GGACGGATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTCCTGACCGAT
AGGTTAAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAGGCGGCAGAG
TGCTTCGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTCGTATCCGTA
GATATTTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCCAATCCGATG
GATACGGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATTAAACATATg
ctttcaagtttttcaagagatttttaaatttgaccttttcctCAGTATCT
TTcaggaatttttttatgaaaaaagaagCAATGACGTACAAGGTAAATTA
CGCAAACTCCTATTTGCATAGGGATTGAAGAAGACAACACAAGAAACGCC
ACAAACCAATCCTTAGTCTCCCTGAAACCAGACCTAAAACCCCTAAAACC
AGAACCCAAGAGACCTATGCCCCTCCCTGCGGTAGCTACTCATCTTCACC
CATCCAACCAACACTTCTACAAACAACTGACTACCCAAAATGGCAACCAA
CACCACCAACGCCAAGGGAAACCTGAATCTGCTGACCTACTAAATATGAC
CACCAAAGGAGAAACAAAGAGACTGGTGGCTGAGAAGACACACCAAACAA
cctcaaaacaaacaaataaacttTTAACGCCTGCTAAACCACCACCACAG
GCAGCTGGGGATGACACCACTACCAGTCATCCACTATCATCAAGCCACCA
GTATTAGTGGAACCTGCTATTTCCGCTACCACCATAATCACCCCAGAAAG
TATCCCAAGGTCAGCAGAAGATGATCCATCCACCAACAACTGAGAAGCAC
AAGACCTGTCCTGAAGAGTGGCTACCCCCGACCAATCTCCGATCCCCCCA
AGCAAAGATGGAAGAAGTGTCAAGTTTaggaaatttttattatttttatt
attttattagtcAGCCCTGAGCAGGGAACACCTCCAAAGAAAACGCGACC
CCACATAGCCATTTAAGGTCGGAGGAATGTACTAAAGTTCCTTCGGCTAT
ACCTTTACTGATCGTATCTAGCGCCCTTCTAACGCCCAACTACGCCTTCC
ACGCTCCNN Run BLAST on NCBI transcript from alignment at sc0000019:403894..409568- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002307 ID=TCONS_00002307|Name=TCONS_00002307|organism=Clytia hemisphaerica|type=transcript|length=5675bp|location=Sequence derived from alignment at sc0000019:403894..409568- (Clytia hemisphaerica)
CATCGGGTGGGCGATAGGACGCATCCCCAGTTTGATAACGGAATCCACAA
GACCAGGGTGCACTGTCCTCTATAAGGTGCGAACGCTGTTAAGCAAGATG
TAGGAGTGTGTGTGATGAGAGGAGTGTTGAGAGTTGACGTAGAAAGTTAG
AAATATCAGAGTGACGCTGTAGTCGTGTAACGACTGTCACTCTTCTCGCG
TTTTTGTTTCGAGCTTGGGCTGCCTCGAATCTTTTTCATGAATGGGAAGA
AATTAAGGACCAGTTGCCTAGGCCCACACGATGTGGATGAGAATTAGCTA
GTGCCGGAGTCCCAGCGCGCGGTGAGCCGCCAGTGGTTGATTTTCATTTG
CCTTTGTGTTCGATAGAGATATTATGCGAAATTGATGTATTGAAACATCT
TTCAGAGTTTACGGTTTTATTGAGATATAATTTGAGGATATTGAGATCCT
GTAGTAACTGATGTATTGAGACATCTAGAGTAAATGATTTCACGNNNNNN
NNNNNNNNNNNNNNNNNNNNATTGTTTGATAAACGAAAATTGAAGCCGCT
AGACTACAGGTGTTTGTAAACGAACAGAACAAACACCTGTTTAAACAAAA
ACGAACGATATTTGTATATTAGATCAGAGTTTAATTCTAGATAGACGCTG
CTGATCTAATCGCGTGGGTTGCGAAATTCGATAGGAATTCGCTCATGCAG
TGGCAAATTTTGAGTGTCGTGAGATGCAAGAAAAATCAAGTGATTTGTTT
TATTTCTTTTCGTTTGTTTCCATTCTTTTGAATAGTGTTTACCATTTGCG
CTAAGCAATTTGTCATCTATAAGGTACATCTTCGTAAGACTTCGAGTGAT
TTTAAAATAAGAAAGATATCTTTGATCTAAACTCACATTAAAGAAATAAA
ACAGAGACAGTGTCGGCACTCGATGTCATACGAAGATCATTTTAGTCCCC
TAGTGTTTGAGGGAAATCGCCCAATGCCAGGATTAAGATCTAGACCGGAG
ATGTTGAGTCCAGACGGTAGTAACCCAATAGATTCCACCAAACCCAATCC
CGGGATAGCGATGAGATAGTTCAGACACTTTCAAAAGCCCTTAAATACGT
AACGAAGTCTAAGAAACCGTCTGCACCCAGGGTTGTCGAAGATCCAAGAG
ATCCGAATGAAGGGGGAAGAACCTGTTGGTGATTTCACCAGCCGGTTCTA
CAAATTCTTTAGGAGGGGGAAAGCTACAAATGGGGAAAGTCTATTGATGT
ATTTGTACATCTCGGGCTTAACGTTAAAAACTCCAAGAAATGGTGGTCTC
AGGCGGACCTGATTATAAAGTCCATTGGGGTAGGAAACTAAATGGGAAGT
GTTATCAGCACTTCCCAGTGACCACTAAAAGAAACATGACTCTCTTTCTA
AGGGTAGAAGATAGGAACCTGCTAGCGCGATCTAGGTCCATTAATTGTAC
TAAGCGAAAAAAACATACCGTGCTCATAACAAAAGATAATAAGGCGTACC
ATATTGACAAACGCGGCCGTATTGACCTCTTAGGTAGCAATATACGAGAC
AGGGTTCTCTTCCCACACTTGGTACGACCTCCTAGGGGCTTCAATACAAA
AATATTCCTTAAAAATCCTGTCATCATGGACCAACCAAGTTTGCTACAAA
TGGTAGCCGAATCAGAACGCACGTTAGAAGAACTAATTAAGATACAGGGT
AGCCCGAGTGGGTCAGGATCTATTGTCGAGGGTATTGGCATGGGATTAGC
TTCAGTCTTGGAAGCTGCAGGGTCAACAGGGGATAAGGTTATTTCAAGTT
TAGGCCGCGCTATCAAGGATACCATTAGTGGCGTCGCGGGTGGTGGTGAA
AAAATTATTACAGCCATTGGGGAATCCGGGGGTAAACTCATAACGTCGAC
AGGTACAGCGGTTAAAGATAGTCTAACGGGAGTCTCTTTTGTATTCAAAG
AAATATTTGGTGGAATACCCGGAATGATTATTTGGGTTATACTGCTTCCG
TTAGGGGTGTATGTCGTTTACCTTAGAATAACGGGACAGATCGGTGGCTG
TAGAACATGTAGGAACTGTCTGGGTACGGCTGGCTCGGAAACCTCATTAC
AAAGTAACGAACCCCCTGCCCGAGAAACAGAAGTATACGATGTACCACGT
ACATTAGAAGAGCGCATGGCACGGCCCTTCCCAGAGTATGCCTCGGTCAC
CCTTAGACCTGTACCCGAGCCGCCGGCACCCAGGCAGAGCGAAGTAGAGC
GAGTAAGGCGACGAAGACAGTTAAATCGCCAACGGCTTAATAAAGCCATA
AATCTATTGGATGAAAGGACATTTTACGCAGAAACACAGTAATGTGTACG
TTTTTTATTTTATATTCTATGTTTTTTTTGTTTTTGTTTTGTTTATTGTG
GTTTGTTTAATGGTTAAACAGCTTATAAATACGAACGAGTTGAAGCAGTT
TAACTGGTGTGTATATAGATGCGAATAGGTTGAAACGGGTTAACGGATGA
GCATTGTTGATTTTGTCTAGTGACTACTGGCGAACAGTACACGGTCCAGT
AGTTAAACGGTGTTTGACACCTGCTGTTCATGAAAAAATTAATTTTAATC
CGTTTGTAATAATCGCATAGTTGACTTCTTTTCTTACAGTTTCCTCAATA
CGCTTTCAGAAAAGAAGAAAAGAAGTTCTAGGTAAGTATATATATATATT
TTTTTTCATTTGCTTTCGAGAGATAATGGTGTTTTTCCGTCCGCACCCAA
TTTTCGGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCACCTACTGGGA
AACCACACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTTCCGTTTAAT
GTCGCTTCTTGTGATGCAGGCACCAGACGACATTACCGAGTCTGAGGAGG
ACCATACGGCGAACATCATCGGATCCTTGACTTGGGAAGCAAACTTCCTA
GAGTCAAGGATCATGATGTACGAAGAACTCCTCCTTCCCCTACTTGCCCA
GATGTGCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGTTCAGGATCT
GGACGGATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTCCTGACCGAT
AGGTTAAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAGGCGGCAGAG
TGCTTCGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTCGTATCCGTA
GATATTTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCCAATCCGATG
GATACGGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATTAAACATATG
CTTTCAAGTTTTTCAAGAGATTTTTAAATTTGACCTTTTCCTCAGTATCT
TTCAGGAATTTTTTTATGAAAAAAGAAGCAATGACGTACAAGGTAAATTA
CGCAAACTCCGTAAGTATTCTACNGATGCGAATAGGTTGAAACGGGTTAA
CGGATGAGCATTGTTGATTTTGTCTAGTGACTACTGACGAACAGTACACG
GTCCAGTAGTTAAACGGTGTTTGACACCTGCTGTTCATGAAAAAATTAAT
TTTAATCCGTTTGTAATAACCGCATAGTTGACTTCTTTTCTTACAGTTTC
CTCAATACGCTTTCAGAAAAGAAGAAAAGAGGTTCTAGGTAAGTATATAT
ATATATATTTTTTTTCATTTGCTTTCGAGAGATAATGGTGTTTTTCCGTC
CGCACCCAATTTTCGGTGGTGTCCGCCGACAAAACCCAGTGGGGGTGCAC
CTACTGGGAAACCACACGTTCCAGGGTTTTAGCTCCCCAATGAATTTTTT
CCGTTTAATGTCGCTTCTTGTGATGCAGGCACCAGACGACATTACCGAGT
CTGAGGAGGACCATACGGCGAACATCATCGGATCCTTGACTTGGGAAGCA
AACTTCCTAGAGTCAAGGATCATGATGTACGAAGAACTCCTCCTTCCCCT
ACTTGCCCAGATGTGCGACTCCACCGAGTTTGATGTGCGGCAAGTATTGT
TCAGGATCTGGACGGATCGTCTTGACATGGCGGTAGTCACCGCCCGGGTC
CTGACCGATAGGTTAAACACCAGGTTGTTCAGTGAGGTCCGTCTGCGAAG
GCGGCAGAGTGCTTCGGATGCCCTTAGTTTGGATGGAAGGTTAGTGCGTC
GTATCCGTAGATATTTGGAACGTGGGATCCCTCACGGGAGAAGACGTCCC
AATCCGATGGATACGGTCGACTAAGGGGTCCAGGCACTCTACCTGAAATT
AAACATATGCTTTCAAGTTTTTCAAGAGATTTTTAAATTTGACCTTTTCT
CAGTATCTTTCAGGAATTTTTTTATGAAAAAAGAAGCAATGACGTACAAG
GTAAATTATGCAAACTCCGTAAGTATTCTAAAAGTACCGCAGGCATCGTT
CCGCCTTGCCTGTCTTGCCTGTATTTTTTTATCCCTAAATTCACAATCAA
TCTTCAGTTTTTTTTTTAGAAACAGATTCCACTGTAACAAAGGTCAACTT
GCTTTCTTTCTTAAAATTTTTTTCTTGTTAAACTTTCATCTGAATGAGGT
CTGAAATTCGAGTTCTCTTCTTATCGGGTCGGAATTTAAAGGTGTAGAAA
GTTCTATAAAAAATCATTTCATTTTTAAAGGAAAGAGAGANTCGAGTTCT
CTTCTTATCGGGTCGGAATTTAAAGGTGTAGAAAGTTCTATAAAAAATCG
TTTCATTTTTAAAGGAGAGAGAGAAAAAAAAAAAGGGAAACGAGAAATTC
GAAGTTGGGACTGCACTCCGTATTAAATTTTTATTTTATATTCTATGTTG
AATTAACGATTTTTTTTTATATATATTTATAGTATTTGCATAGGGATTGA
AGAAGACAACACGAGAAACGCCACAANTTATTTTAATTTCTAGGTTGAAT
TAACGATTTTTTATATATATTTATAGTATTTGCATAGGGATTGAAGAAGA
CAACACAAGAAACGCCACAAACCAATCCTTAGTCTCCCTGAAACCAGACC
TAAAACCCCTAAAACCAGAACCCAAGAGACCTATGCCCCTCCCTGCGGTA
GCTACTCATCTTCACCCATCCAACCAACACTTCTACAAACAACTGACTAC
CCAAAATGGCAACCAACACCACCAACGCCAAGGGAAACCTGAATCTGCTG
ACCTACTAAATATGACCACCAAAGGAGAAACAAAGAGACTGGTGGCTGAG
AAGACACACCAAACAACCTCAAAACAAACAAATAAACTTTTAACGCCTGC
TAAACCACCACCACAGGCAGCTGGGGATGACACCACTACCAGTCATCCAC
TATCATCAAGCCACCAGTATTAGTGGAACCTGCTATTTCCGCTACCACCA
TAATCACCCCAGAAAGTATCCCAAGGTCAGCAGAAGATGATCCATCCACC
AACAACTGAGAAGCACAAGACCTGTCCTGAAGAGTGGCTACCCCCGACCA
ATCTCCGATCCCCCCAAGCAAAGATGGAAGAAGTGTCAAGTTTAGGAAAT
TTTTATTATTTTTATTATTTTATTAGTCAGCCCTGAGCAGGGAACACCTC
CAAAGAAAACGCGACCCCACATAGCCATTTAAGGTCGGAGGAATGTACTA
AAGTTCCTTCGGCTATACCTTTACTGATCGTATCTAGCGCCCTTCTAACG
CCCAACTACGCCTTCCACGCTCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002307-exon-sc0000019-1575043694:406159..409568 | TCONS_00002307-exon-sc0000019-1575043694:406159..409568 | Clytia hemisphaerica | exon |
| TCONS_00002307-exon-sc0000019-1575043694:403894..404642 | TCONS_00002307-exon-sc0000019-1575043694:403894..404642 | Clytia hemisphaerica | exon |
| TCONS_00002307-exon-sc0000019-1510915933:406159..409568 | TCONS_00002307-exon-sc0000019-1510915933:406159..409568 | Clytia hemisphaerica | exon |
| TCONS_00002307-exon-sc0000019-1510915933:403894..404642 | TCONS_00002307-exon-sc0000019-1510915933:403894..404642 | Clytia hemisphaerica | exon |
| TCONS_00002307-exon-sc0000019-1491911889:406159..409568 | TCONS_00002307-exon-sc0000019-1491911889:406159..409568 | Clytia hemisphaerica | exon |
| TCONS_00002307-exon-sc0000019-1491911889:403894..404642 | TCONS_00002307-exon-sc0000019-1491911889:403894..404642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:403894..409568 - |
Blast
The following BLAST results are available for this feature:
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